Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00881 and MIT1002_00882 are separated by 257 nucleotides MIT1002_00882 and MIT1002_00883 overlap by 1 nucleotides MIT1002_00883 and MIT1002_00884 are separated by 17 nucleotides
MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341
_00881
MIT1002_00882: MIT1002_00882 - Sigma-W factor, at 974,599 to 975,129
_00882
MIT1002_00883: MIT1002_00883 - putative transmembrane transcriptional regulator (anti-sigma factor), at 975,129 to 975,887
_00883
MIT1002_00884: MIT1002_00884 - hypothetical protein, at 975,905 to 976,846
_00884
Position (kb) 974
975
976 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 973.664 kb on + strand, within MIT1002_00881 at 973.683 kb on - strand, within MIT1002_00881 at 973.697 kb on + strand, within MIT1002_00881 at 973.716 kb on + strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.868 kb on - strand, within MIT1002_00881 at 973.910 kb on - strand, within MIT1002_00881 at 973.918 kb on - strand, within MIT1002_00881 at 973.928 kb on + strand, within MIT1002_00881 at 973.931 kb on - strand, within MIT1002_00881 at 973.936 kb on - strand, within MIT1002_00881 at 973.961 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 973.972 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.035 kb on + strand, within MIT1002_00881 at 974.037 kb on + strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.043 kb on - strand, within MIT1002_00881 at 974.069 kb on + strand, within MIT1002_00881 at 974.075 kb on - strand, within MIT1002_00881 at 974.118 kb on - strand, within MIT1002_00881 at 974.194 kb on - strand, within MIT1002_00881 at 974.212 kb on - strand, within MIT1002_00881 at 974.232 kb on + strand, within MIT1002_00881 at 974.255 kb on - strand at 974.264 kb on + strand at 974.314 kb on + strand at 974.315 kb on + strand at 974.342 kb on + strand at 974.427 kb on + strand at 974.435 kb on - strand at 974.466 kb on - strand at 974.556 kb on + strand at 974.561 kb on - strand at 974.644 kb on - strand at 974.705 kb on + strand, within MIT1002_00882 at 974.748 kb on - strand, within MIT1002_00882 at 974.794 kb on + strand, within MIT1002_00882 at 974.802 kb on - strand, within MIT1002_00882 at 974.843 kb on + strand, within MIT1002_00882 at 974.853 kb on - strand, within MIT1002_00882 at 974.901 kb on + strand, within MIT1002_00882 at 974.909 kb on - strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.952 kb on - strand, within MIT1002_00882 at 974.957 kb on + strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.978 kb on + strand, within MIT1002_00882 at 975.087 kb on + strand at 975.097 kb on + strand at 975.150 kb on + strand at 975.300 kb on + strand, within MIT1002_00883 at 975.462 kb on - strand, within MIT1002_00883 at 975.574 kb on + strand, within MIT1002_00883 at 975.631 kb on + strand, within MIT1002_00883 at 975.655 kb on - strand, within MIT1002_00883 at 975.670 kb on - strand, within MIT1002_00883 at 975.782 kb on + strand, within MIT1002_00883 at 975.862 kb on + strand at 975.934 kb on + strand at 975.961 kb on + strand at 976.097 kb on + strand, within MIT1002_00884
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 973,664 + MIT1002_00881 0.25 -1.8 973,683 - MIT1002_00881 0.28 -1.7 973,697 + MIT1002_00881 0.29 +0.3 973,716 + MIT1002_00881 0.31 -0.6 973,868 - MIT1002_00881 0.48 -0.1 973,868 - MIT1002_00881 0.48 +1.4 973,910 - MIT1002_00881 0.52 -0.1 973,918 - MIT1002_00881 0.53 +0.5 973,928 + MIT1002_00881 0.54 +1.4 973,931 - MIT1002_00881 0.55 -0.5 973,936 - MIT1002_00881 0.55 +0.2 973,961 + MIT1002_00881 0.58 -0.1 973,972 + MIT1002_00881 0.59 -0.7 973,972 + MIT1002_00881 0.59 +0.9 974,035 + MIT1002_00881 0.66 -0.1 974,035 + MIT1002_00881 0.66 -1.6 974,035 + MIT1002_00881 0.66 +0.9 974,035 + MIT1002_00881 0.66 -2.0 974,037 + MIT1002_00881 0.66 -1.7 974,043 - MIT1002_00881 0.67 +0.3 974,043 - MIT1002_00881 0.67 -0.6 974,043 - MIT1002_00881 0.67 -0.5 974,043 - MIT1002_00881 0.67 -0.8 974,069 + MIT1002_00881 0.70 +0.4 974,075 - MIT1002_00881 0.71 -0.9 974,118 - MIT1002_00881 0.75 -0.9 974,194 - MIT1002_00881 0.84 -1.3 974,212 - MIT1002_00881 0.86 +0.4 974,232 + MIT1002_00881 0.88 -3.8 974,255 - -0.1 974,264 + -0.9 974,314 + -1.2 974,315 + -0.6 974,342 + +0.6 974,427 + +1.3 974,435 - +0.2 974,466 - -0.3 974,556 + +2.3 974,561 - +0.4 974,644 - -0.6 974,705 + MIT1002_00882 0.20 -1.7 974,748 - MIT1002_00882 0.28 -0.3 974,794 + MIT1002_00882 0.37 +1.7 974,802 - MIT1002_00882 0.38 +0.5 974,843 + MIT1002_00882 0.46 -0.2 974,853 - MIT1002_00882 0.48 -1.4 974,901 + MIT1002_00882 0.57 +0.4 974,909 - MIT1002_00882 0.58 +1.6 974,949 + MIT1002_00882 0.66 +1.6 974,949 + MIT1002_00882 0.66 +0.1 974,952 - MIT1002_00882 0.66 +0.4 974,957 + MIT1002_00882 0.67 -3.1 974,957 - MIT1002_00882 0.67 +0.0 974,957 - MIT1002_00882 0.67 -1.5 974,957 - MIT1002_00882 0.67 +0.8 974,971 + MIT1002_00882 0.70 -0.6 974,971 + MIT1002_00882 0.70 -1.0 974,978 + MIT1002_00882 0.71 +0.3 975,087 + -1.5 975,097 + +0.2 975,150 + -3.3 975,300 + MIT1002_00883 0.23 -4.0 975,462 - MIT1002_00883 0.44 -1.8 975,574 + MIT1002_00883 0.59 -0.6 975,631 + MIT1002_00883 0.66 -0.0 975,655 - MIT1002_00883 0.69 -2.9 975,670 - MIT1002_00883 0.71 +0.9 975,782 + MIT1002_00883 0.86 -2.1 975,862 + +0.3 975,934 + -2.5 975,961 + -2.1 976,097 + MIT1002_00884 0.20 -4.0
Or see this region's nucleotide sequence