Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00854 and MIT1002_00855 are separated by 19 nucleotides MIT1002_00855 and MIT1002_00856 are separated by 23 nucleotides MIT1002_00856 and MIT1002_00857 overlap by 4 nucleotides
MIT1002_00854: MIT1002_00854 - aromatic amino acid exporter, at 936,412 to 937,344
_00854
MIT1002_00855: MIT1002_00855 - lysine-arginine-ornithine-binding periplasmic protein, at 937,364 to 938,128
_00855
MIT1002_00856: MIT1002_00856 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 938,152 to 941,031
_00856
MIT1002_00857: MIT1002_00857 - leucine ABC transporter subunit substrate-binding protein LivK, at 941,028 to 942,206
_00857
Position (kb) 938
939
940
941
942 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.269 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.279 kb on - strand at 937.287 kb on - strand at 937.339 kb on + strand at 937.363 kb on - strand at 937.459 kb on - strand, within MIT1002_00855 at 937.569 kb on + strand, within MIT1002_00855 at 937.587 kb on - strand, within MIT1002_00855 at 937.601 kb on + strand, within MIT1002_00855 at 937.608 kb on - strand, within MIT1002_00855 at 937.608 kb on - strand, within MIT1002_00855 at 937.614 kb on - strand, within MIT1002_00855 at 937.619 kb on - strand, within MIT1002_00855 at 937.689 kb on - strand, within MIT1002_00855 at 937.717 kb on + strand, within MIT1002_00855 at 937.773 kb on - strand, within MIT1002_00855 at 937.827 kb on - strand, within MIT1002_00855 at 937.876 kb on + strand, within MIT1002_00855 at 937.884 kb on - strand, within MIT1002_00855 at 937.884 kb on - strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.987 kb on + strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 937.995 kb on - strand, within MIT1002_00855 at 938.099 kb on + strand at 938.197 kb on + strand at 938.205 kb on - strand at 938.225 kb on - strand at 938.234 kb on + strand at 938.267 kb on + strand at 938.285 kb on - strand at 938.344 kb on - strand at 938.370 kb on + strand at 938.370 kb on + strand at 938.403 kb on + strand at 938.412 kb on - strand at 938.510 kb on - strand, within MIT1002_00856 at 938.577 kb on + strand, within MIT1002_00856 at 938.577 kb on + strand, within MIT1002_00856 at 938.579 kb on + strand, within MIT1002_00856 at 938.585 kb on - strand, within MIT1002_00856 at 938.597 kb on + strand, within MIT1002_00856 at 938.597 kb on + strand, within MIT1002_00856 at 938.597 kb on + strand, within MIT1002_00856 at 938.605 kb on - strand, within MIT1002_00856 at 938.605 kb on - strand, within MIT1002_00856 at 938.636 kb on - strand, within MIT1002_00856 at 938.653 kb on + strand, within MIT1002_00856 at 938.724 kb on + strand, within MIT1002_00856 at 938.730 kb on + strand, within MIT1002_00856 at 938.730 kb on + strand, within MIT1002_00856 at 938.764 kb on - strand, within MIT1002_00856 at 938.837 kb on - strand, within MIT1002_00856 at 938.837 kb on - strand, within MIT1002_00856 at 938.837 kb on - strand, within MIT1002_00856 at 938.839 kb on + strand, within MIT1002_00856 at 938.865 kb on - strand, within MIT1002_00856 at 938.889 kb on + strand, within MIT1002_00856 at 938.897 kb on + strand, within MIT1002_00856 at 938.897 kb on - strand, within MIT1002_00856 at 938.968 kb on + strand, within MIT1002_00856 at 938.968 kb on + strand, within MIT1002_00856 at 938.968 kb on + strand, within MIT1002_00856 at 938.968 kb on + strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.976 kb on - strand, within MIT1002_00856 at 938.987 kb on - strand, within MIT1002_00856 at 939.006 kb on + strand, within MIT1002_00856 at 939.020 kb on - strand, within MIT1002_00856 at 939.151 kb on + strand, within MIT1002_00856 at 939.213 kb on + strand, within MIT1002_00856 at 939.221 kb on - strand, within MIT1002_00856 at 939.221 kb on - strand, within MIT1002_00856 at 939.255 kb on + strand, within MIT1002_00856 at 939.263 kb on - strand, within MIT1002_00856 at 939.263 kb on - strand, within MIT1002_00856 at 939.366 kb on + strand, within MIT1002_00856 at 939.381 kb on + strand, within MIT1002_00856 at 939.381 kb on + strand, within MIT1002_00856 at 939.389 kb on - strand, within MIT1002_00856 at 939.494 kb on + strand, within MIT1002_00856 at 939.512 kb on - strand, within MIT1002_00856 at 939.525 kb on + strand, within MIT1002_00856 at 939.595 kb on + strand, within MIT1002_00856 at 939.602 kb on + strand, within MIT1002_00856 at 939.692 kb on + strand, within MIT1002_00856 at 939.692 kb on + strand, within MIT1002_00856 at 939.922 kb on + strand, within MIT1002_00856 at 940.020 kb on - strand, within MIT1002_00856 at 940.020 kb on - strand, within MIT1002_00856 at 940.069 kb on - strand, within MIT1002_00856 at 940.128 kb on + strand, within MIT1002_00856 at 940.199 kb on - strand, within MIT1002_00856 at 940.222 kb on - strand, within MIT1002_00856 at 940.257 kb on - strand, within MIT1002_00856 at 940.272 kb on - strand, within MIT1002_00856 at 940.304 kb on + strand, within MIT1002_00856 at 940.314 kb on + strand, within MIT1002_00856 at 940.314 kb on + strand, within MIT1002_00856 at 940.322 kb on - strand, within MIT1002_00856 at 940.330 kb on + strand, within MIT1002_00856 at 940.332 kb on - strand, within MIT1002_00856 at 940.397 kb on - strand, within MIT1002_00856 at 940.421 kb on + strand, within MIT1002_00856 at 940.421 kb on + strand, within MIT1002_00856 at 940.424 kb on - strand, within MIT1002_00856 at 940.431 kb on + strand, within MIT1002_00856 at 940.447 kb on - strand, within MIT1002_00856 at 940.447 kb on - strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.470 kb on + strand, within MIT1002_00856 at 940.474 kb on + strand, within MIT1002_00856 at 940.474 kb on + strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.478 kb on - strand, within MIT1002_00856 at 940.495 kb on - strand, within MIT1002_00856 at 940.502 kb on - strand, within MIT1002_00856 at 940.521 kb on - strand, within MIT1002_00856 at 940.538 kb on + strand, within MIT1002_00856 at 940.538 kb on + strand, within MIT1002_00856 at 940.546 kb on - strand, within MIT1002_00856 at 940.546 kb on - strand, within MIT1002_00856 at 940.584 kb on - strand, within MIT1002_00856 at 940.584 kb on - strand, within MIT1002_00856 at 940.586 kb on + strand, within MIT1002_00856 at 940.605 kb on + strand, within MIT1002_00856 at 940.605 kb on + strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.613 kb on - strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.631 kb on + strand, within MIT1002_00856 at 940.639 kb on - strand, within MIT1002_00856 at 940.639 kb on - strand, within MIT1002_00856 at 940.819 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.830 kb on + strand at 940.838 kb on - strand at 940.838 kb on - strand at 940.972 kb on - strand at 941.019 kb on - strand at 941.020 kb on - strand at 941.102 kb on + strand at 941.128 kb on + strand at 941.131 kb on + strand at 941.136 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.139 kb on - strand at 941.141 kb on + strand at 941.156 kb on - strand, within MIT1002_00857 at 941.169 kb on + strand, within MIT1002_00857 at 941.177 kb on - strand, within MIT1002_00857 at 941.177 kb on - strand, within MIT1002_00857 at 941.179 kb on - strand, within MIT1002_00857 at 941.195 kb on + strand, within MIT1002_00857 at 941.195 kb on + strand, within MIT1002_00857 at 941.275 kb on + strand, within MIT1002_00857 at 941.316 kb on - strand, within MIT1002_00857 at 941.395 kb on + strand, within MIT1002_00857 at 941.411 kb on + strand, within MIT1002_00857 at 941.440 kb on + strand, within MIT1002_00857 at 941.493 kb on + strand, within MIT1002_00857 at 941.506 kb on - strand, within MIT1002_00857 at 941.506 kb on - strand, within MIT1002_00857 at 941.573 kb on - strand, within MIT1002_00857 at 941.588 kb on - strand, within MIT1002_00857 at 941.614 kb on - strand, within MIT1002_00857 at 941.614 kb on - strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.670 kb on + strand, within MIT1002_00857 at 941.680 kb on + strand, within MIT1002_00857 at 941.688 kb on - strand, within MIT1002_00857 at 941.688 kb on - strand, within MIT1002_00857 at 941.858 kb on + strand, within MIT1002_00857 at 941.863 kb on + strand, within MIT1002_00857 at 941.880 kb on + strand, within MIT1002_00857 at 941.946 kb on + strand, within MIT1002_00857 at 941.946 kb on + strand, within MIT1002_00857 at 941.954 kb on - strand, within MIT1002_00857 at 941.956 kb on - strand, within MIT1002_00857 at 942.001 kb on - strand, within MIT1002_00857
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 937,269 - +0.1 937,279 - +0.1 937,279 - -0.1 937,279 - -0.8 937,287 - +0.1 937,339 + +1.4 937,363 - -0.1 937,459 - MIT1002_00855 0.12 -1.2 937,569 + MIT1002_00855 0.27 -0.1 937,587 - MIT1002_00855 0.29 +0.9 937,601 + MIT1002_00855 0.31 -1.3 937,608 - MIT1002_00855 0.32 +0.1 937,608 - MIT1002_00855 0.32 -1.4 937,614 - MIT1002_00855 0.33 +0.6 937,619 - MIT1002_00855 0.33 +0.8 937,689 - MIT1002_00855 0.42 +1.4 937,717 + MIT1002_00855 0.46 -2.2 937,773 - MIT1002_00855 0.53 -0.7 937,827 - MIT1002_00855 0.61 -0.5 937,876 + MIT1002_00855 0.67 +0.7 937,884 - MIT1002_00855 0.68 +0.3 937,884 - MIT1002_00855 0.68 +0.5 937,987 + MIT1002_00855 0.81 +1.3 937,987 + MIT1002_00855 0.81 +0.7 937,987 + MIT1002_00855 0.81 -0.3 937,987 + MIT1002_00855 0.81 +0.2 937,987 + MIT1002_00855 0.81 +1.0 937,987 + MIT1002_00855 0.81 +1.7 937,987 + MIT1002_00855 0.81 -0.6 937,995 - MIT1002_00855 0.82 -1.4 937,995 - MIT1002_00855 0.82 +0.2 937,995 - MIT1002_00855 0.82 +0.9 937,995 - MIT1002_00855 0.82 +1.2 937,995 - MIT1002_00855 0.82 -0.0 937,995 - MIT1002_00855 0.82 -0.6 937,995 - MIT1002_00855 0.82 -0.4 937,995 - MIT1002_00855 0.82 -1.2 937,995 - MIT1002_00855 0.82 +1.4 937,995 - MIT1002_00855 0.82 -0.0 937,995 - MIT1002_00855 0.82 +0.1 937,995 - MIT1002_00855 0.82 +0.7 937,995 - MIT1002_00855 0.82 -0.1 937,995 - MIT1002_00855 0.82 -0.9 937,995 - MIT1002_00855 0.82 -0.2 937,995 - MIT1002_00855 0.82 +1.9 938,099 + +1.1 938,197 + +0.3 938,205 - -0.3 938,225 - -0.6 938,234 + +0.5 938,267 + +0.2 938,285 - +0.6 938,344 - +0.3 938,370 + +0.9 938,370 + -0.3 938,403 + +0.5 938,412 - -0.2 938,510 - MIT1002_00856 0.12 +1.9 938,577 + MIT1002_00856 0.15 -0.1 938,577 + MIT1002_00856 0.15 +0.1 938,579 + MIT1002_00856 0.15 +0.1 938,585 - MIT1002_00856 0.15 +2.1 938,597 + MIT1002_00856 0.15 +0.2 938,597 + MIT1002_00856 0.15 +0.2 938,597 + MIT1002_00856 0.15 +0.0 938,605 - MIT1002_00856 0.16 -0.6 938,605 - MIT1002_00856 0.16 -0.3 938,636 - MIT1002_00856 0.17 +1.6 938,653 + MIT1002_00856 0.17 +0.2 938,724 + MIT1002_00856 0.20 +0.6 938,730 + MIT1002_00856 0.20 -1.0 938,730 + MIT1002_00856 0.20 +0.3 938,764 - MIT1002_00856 0.21 -0.7 938,837 - MIT1002_00856 0.24 +0.8 938,837 - MIT1002_00856 0.24 +1.1 938,837 - MIT1002_00856 0.24 +0.8 938,839 + MIT1002_00856 0.24 +1.2 938,865 - MIT1002_00856 0.25 +0.2 938,889 + MIT1002_00856 0.26 +0.1 938,897 + MIT1002_00856 0.26 -0.8 938,897 - MIT1002_00856 0.26 +0.1 938,968 + MIT1002_00856 0.28 +1.5 938,968 + MIT1002_00856 0.28 +1.5 938,968 + MIT1002_00856 0.28 +0.5 938,968 + MIT1002_00856 0.28 +2.1 938,976 - MIT1002_00856 0.29 +0.4 938,976 - MIT1002_00856 0.29 +0.4 938,976 - MIT1002_00856 0.29 +0.4 938,976 - MIT1002_00856 0.29 +1.5 938,976 - MIT1002_00856 0.29 +0.5 938,976 - MIT1002_00856 0.29 +0.2 938,976 - MIT1002_00856 0.29 +1.1 938,976 - MIT1002_00856 0.29 +0.8 938,987 - MIT1002_00856 0.29 +0.7 939,006 + MIT1002_00856 0.30 -0.8 939,020 - MIT1002_00856 0.30 +1.5 939,151 + MIT1002_00856 0.35 -0.3 939,213 + MIT1002_00856 0.37 +0.3 939,221 - MIT1002_00856 0.37 +0.9 939,221 - MIT1002_00856 0.37 +0.4 939,255 + MIT1002_00856 0.38 +0.1 939,263 - MIT1002_00856 0.39 +0.4 939,263 - MIT1002_00856 0.39 -0.5 939,366 + MIT1002_00856 0.42 +0.4 939,381 + MIT1002_00856 0.43 +1.4 939,381 + MIT1002_00856 0.43 -2.8 939,389 - MIT1002_00856 0.43 +0.3 939,494 + MIT1002_00856 0.47 +1.6 939,512 - MIT1002_00856 0.47 -0.4 939,525 + MIT1002_00856 0.48 +0.0 939,595 + MIT1002_00856 0.50 +0.5 939,602 + MIT1002_00856 0.50 -1.6 939,692 + MIT1002_00856 0.53 -0.4 939,692 + MIT1002_00856 0.53 -0.2 939,922 + MIT1002_00856 0.61 +1.1 940,020 - MIT1002_00856 0.65 +0.7 940,020 - MIT1002_00856 0.65 -1.2 940,069 - MIT1002_00856 0.67 +0.1 940,128 + MIT1002_00856 0.69 +0.6 940,199 - MIT1002_00856 0.71 +0.6 940,222 - MIT1002_00856 0.72 +0.9 940,257 - MIT1002_00856 0.73 +0.9 940,272 - MIT1002_00856 0.74 +0.1 940,304 + MIT1002_00856 0.75 +1.5 940,314 + MIT1002_00856 0.75 -0.5 940,314 + MIT1002_00856 0.75 +0.4 940,322 - MIT1002_00856 0.75 -0.4 940,330 + MIT1002_00856 0.76 -0.1 940,332 - MIT1002_00856 0.76 +1.4 940,397 - MIT1002_00856 0.78 -0.3 940,421 + MIT1002_00856 0.79 +0.3 940,421 + MIT1002_00856 0.79 +1.8 940,424 - MIT1002_00856 0.79 -1.1 940,431 + MIT1002_00856 0.79 +0.6 940,447 - MIT1002_00856 0.80 +0.9 940,447 - MIT1002_00856 0.80 +0.7 940,470 + MIT1002_00856 0.80 -1.0 940,470 + MIT1002_00856 0.80 +1.2 940,470 + MIT1002_00856 0.80 +0.4 940,470 + MIT1002_00856 0.80 +0.2 940,470 + MIT1002_00856 0.80 +0.3 940,474 + MIT1002_00856 0.81 +0.1 940,474 + MIT1002_00856 0.81 +0.0 940,478 - MIT1002_00856 0.81 +0.9 940,478 - MIT1002_00856 0.81 -0.2 940,478 - MIT1002_00856 0.81 +0.5 940,478 - MIT1002_00856 0.81 +0.0 940,478 - MIT1002_00856 0.81 -0.1 940,495 - MIT1002_00856 0.81 +0.1 940,502 - MIT1002_00856 0.82 +0.4 940,521 - MIT1002_00856 0.82 +0.3 940,538 + MIT1002_00856 0.83 +0.6 940,538 + MIT1002_00856 0.83 +0.9 940,546 - MIT1002_00856 0.83 -0.6 940,546 - MIT1002_00856 0.83 +0.8 940,584 - MIT1002_00856 0.84 +0.4 940,584 - MIT1002_00856 0.84 +0.6 940,586 + MIT1002_00856 0.85 +1.0 940,605 + MIT1002_00856 0.85 -1.0 940,605 + MIT1002_00856 0.85 -3.3 940,613 - MIT1002_00856 0.85 +0.6 940,613 - MIT1002_00856 0.85 +0.1 940,613 - MIT1002_00856 0.85 -0.6 940,631 + MIT1002_00856 0.86 +0.4 940,631 + MIT1002_00856 0.86 -0.6 940,631 + MIT1002_00856 0.86 -0.1 940,631 + MIT1002_00856 0.86 +0.7 940,639 - MIT1002_00856 0.86 -0.1 940,639 - MIT1002_00856 0.86 +0.6 940,819 + -1.0 940,830 + +1.6 940,830 + -0.6 940,830 + +1.9 940,830 + -0.0 940,830 + +0.4 940,838 - +0.5 940,838 - +0.4 940,972 - +2.6 941,019 - -0.0 941,020 - +0.4 941,102 + -0.9 941,128 + +0.7 941,131 + -1.5 941,136 - +2.4 941,139 - -0.6 941,139 - -0.5 941,139 - -0.7 941,139 - -0.8 941,141 + -0.5 941,156 - MIT1002_00857 0.11 +0.0 941,169 + MIT1002_00857 0.12 +0.6 941,177 - MIT1002_00857 0.13 +1.0 941,177 - MIT1002_00857 0.13 -1.6 941,179 - MIT1002_00857 0.13 -0.0 941,195 + MIT1002_00857 0.14 -0.5 941,195 + MIT1002_00857 0.14 +0.0 941,275 + MIT1002_00857 0.21 +1.1 941,316 - MIT1002_00857 0.24 +0.4 941,395 + MIT1002_00857 0.31 +0.6 941,411 + MIT1002_00857 0.32 -0.0 941,440 + MIT1002_00857 0.35 -1.1 941,493 + MIT1002_00857 0.39 -0.6 941,506 - MIT1002_00857 0.41 -0.3 941,506 - MIT1002_00857 0.41 -2.8 941,573 - MIT1002_00857 0.46 -0.2 941,588 - MIT1002_00857 0.47 -0.4 941,614 - MIT1002_00857 0.50 -0.1 941,614 - MIT1002_00857 0.50 -0.7 941,670 + MIT1002_00857 0.54 -0.8 941,670 + MIT1002_00857 0.54 +0.6 941,670 + MIT1002_00857 0.54 +0.7 941,680 + MIT1002_00857 0.55 -0.1 941,688 - MIT1002_00857 0.56 -0.6 941,688 - MIT1002_00857 0.56 -0.5 941,858 + MIT1002_00857 0.70 +0.4 941,863 + MIT1002_00857 0.71 +0.6 941,880 + MIT1002_00857 0.72 +0.5 941,946 + MIT1002_00857 0.78 +0.4 941,946 + MIT1002_00857 0.78 -2.0 941,954 - MIT1002_00857 0.79 -0.0 941,956 - MIT1002_00857 0.79 +0.7 942,001 - MIT1002_00857 0.83 +0.3
Or see this region's nucleotide sequence