Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00806

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00804 and MIT1002_00805 overlap by 11 nucleotidesMIT1002_00805 and MIT1002_00806 are separated by 90 nucleotidesMIT1002_00806 and MIT1002_00807 overlap by 4 nucleotidesMIT1002_00807 and MIT1002_00808 overlap by 11 nucleotides MIT1002_00804: MIT1002_00804 - SNARE associated Golgi protein, at 891,695 to 892,372 _00804 MIT1002_00805: MIT1002_00805 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 892,362 to 893,099 _00805 MIT1002_00806: MIT1002_00806 - hypothetical protein, at 893,190 to 893,891 _00806 MIT1002_00807: MIT1002_00807 - hypothetical protein, at 893,888 to 894,652 _00807 MIT1002_00808: MIT1002_00808 - hypothetical protein, at 894,642 to 895,007 _00808 Position (kb) 893 894Strain fitness (log2 ratio) -2 -1 0 1at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.200 kb on - strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.291 kb on + strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.299 kb on - strand, within MIT1002_00804at 892.469 kb on - strand, within MIT1002_00805at 892.469 kb on - strand, within MIT1002_00805at 892.532 kb on + strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.539 kb on - strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.634 kb on + strand, within MIT1002_00805at 892.655 kb on - strand, within MIT1002_00805at 892.736 kb on - strand, within MIT1002_00805at 892.741 kb on - strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.753 kb on + strand, within MIT1002_00805at 892.761 kb on + strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.761 kb on - strand, within MIT1002_00805at 892.769 kb on - strand, within MIT1002_00805at 892.817 kb on + strand, within MIT1002_00805at 892.875 kb on + strand, within MIT1002_00805at 892.875 kb on + strand, within MIT1002_00805at 892.907 kb on + strand, within MIT1002_00805at 892.966 kb on + strand, within MIT1002_00805at 893.038 kb on + strandat 893.054 kb on - strandat 893.133 kb on - strandat 893.166 kb on - strandat 893.211 kb on + strandat 893.307 kb on + strand, within MIT1002_00806at 893.318 kb on + strand, within MIT1002_00806at 893.352 kb on - strand, within MIT1002_00806at 893.431 kb on + strand, within MIT1002_00806at 893.604 kb on + strand, within MIT1002_00806at 893.607 kb on - strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.784 kb on + strand, within MIT1002_00806at 893.792 kb on - strand, within MIT1002_00806at 893.792 kb on - strand, within MIT1002_00806at 893.980 kb on + strand, within MIT1002_00807at 894.071 kb on + strand, within MIT1002_00807at 894.093 kb on - strand, within MIT1002_00807at 894.137 kb on + strand, within MIT1002_00807at 894.234 kb on + strand, within MIT1002_00807at 894.239 kb on + strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.242 kb on - strand, within MIT1002_00807at 894.327 kb on + strand, within MIT1002_00807at 894.340 kb on - strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.358 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.364 kb on + strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.366 kb on - strand, within MIT1002_00807at 894.372 kb on - strand, within MIT1002_00807at 894.377 kb on - strand, within MIT1002_00807at 894.413 kb on + strand, within MIT1002_00807at 894.447 kb on + strand, within MIT1002_00807at 894.472 kb on + strand, within MIT1002_00807at 894.498 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.509 kb on + strand, within MIT1002_00807at 894.606 kb on - strandat 894.711 kb on - strand, within MIT1002_00808at 894.748 kb on + strand, within MIT1002_00808at 894.818 kb on - strand, within MIT1002_00808

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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892,200 - MIT1002_00804 0.74 +1.6
892,200 - MIT1002_00804 0.74 -1.8
892,200 - MIT1002_00804 0.74 +0.2
892,200 - MIT1002_00804 0.74 -1.8
892,291 + MIT1002_00804 0.88 -2.6
892,291 + MIT1002_00804 0.88 -0.9
892,299 - MIT1002_00804 0.89 +0.0
892,299 - MIT1002_00804 0.89 -0.2
892,469 - MIT1002_00805 0.14 +0.5
892,469 - MIT1002_00805 0.14 -0.8
892,532 + MIT1002_00805 0.23 -0.4
892,539 - MIT1002_00805 0.24 -2.2
892,539 - MIT1002_00805 0.24 +0.9
892,539 - MIT1002_00805 0.24 +0.2
892,634 + MIT1002_00805 0.37 +0.0
892,634 + MIT1002_00805 0.37 +0.3
892,655 - MIT1002_00805 0.40 -0.4
892,736 - MIT1002_00805 0.51 -0.8
892,741 - MIT1002_00805 0.51 -0.4
892,753 + MIT1002_00805 0.53 +0.5
892,753 + MIT1002_00805 0.53 -0.3
892,753 + MIT1002_00805 0.53 +1.5
892,753 + MIT1002_00805 0.53 -0.1
892,761 + MIT1002_00805 0.54 +0.2
892,761 - MIT1002_00805 0.54 -0.1
892,761 - MIT1002_00805 0.54 +0.2
892,761 - MIT1002_00805 0.54 -1.3
892,761 - MIT1002_00805 0.54 +0.0
892,769 - MIT1002_00805 0.55 -0.6
892,817 + MIT1002_00805 0.62 -0.5
892,875 + MIT1002_00805 0.70 +1.4
892,875 + MIT1002_00805 0.70 +0.6
892,907 + MIT1002_00805 0.74 -0.2
892,966 + MIT1002_00805 0.82 +0.7
893,038 + -0.1
893,054 - +0.6
893,133 - -0.6
893,166 - -0.2
893,211 + -1.6
893,307 + MIT1002_00806 0.17 +0.4
893,318 + MIT1002_00806 0.18 -1.6
893,352 - MIT1002_00806 0.23 -0.9
893,431 + MIT1002_00806 0.34 +0.2
893,604 + MIT1002_00806 0.59 +0.5
893,607 - MIT1002_00806 0.59 +0.5
893,784 + MIT1002_00806 0.85 -1.1
893,784 + MIT1002_00806 0.85 -0.2
893,784 + MIT1002_00806 0.85 -1.2
893,784 + MIT1002_00806 0.85 -1.0
893,784 + MIT1002_00806 0.85 -1.2
893,792 - MIT1002_00806 0.86 -1.2
893,792 - MIT1002_00806 0.86 -2.7
893,980 + MIT1002_00807 0.12 -0.3
894,071 + MIT1002_00807 0.24 +0.4
894,093 - MIT1002_00807 0.27 -0.2
894,137 + MIT1002_00807 0.33 -0.2
894,234 + MIT1002_00807 0.45 +0.6
894,239 + MIT1002_00807 0.46 +0.3
894,242 - MIT1002_00807 0.46 +0.7
894,242 - MIT1002_00807 0.46 +0.9
894,327 + MIT1002_00807 0.57 -0.6
894,340 - MIT1002_00807 0.59 +1.3
894,358 + MIT1002_00807 0.61 -0.3
894,358 + MIT1002_00807 0.61 -1.2
894,358 + MIT1002_00807 0.61 -0.2
894,364 + MIT1002_00807 0.62 +0.6
894,364 + MIT1002_00807 0.62 -1.7
894,364 + MIT1002_00807 0.62 -0.2
894,364 + MIT1002_00807 0.62 -0.3
894,364 + MIT1002_00807 0.62 +0.5
894,366 - MIT1002_00807 0.62 -0.3
894,366 - MIT1002_00807 0.62 -0.0
894,372 - MIT1002_00807 0.63 +0.5
894,377 - MIT1002_00807 0.64 -0.7
894,413 + MIT1002_00807 0.69 -0.0
894,447 + MIT1002_00807 0.73 +0.2
894,472 + MIT1002_00807 0.76 +1.0
894,498 + MIT1002_00807 0.80 +1.4
894,509 + MIT1002_00807 0.81 -0.1
894,509 + MIT1002_00807 0.81 +0.5
894,606 - +1.0
894,711 - MIT1002_00808 0.19 -1.0
894,748 + MIT1002_00808 0.29 +1.5
894,818 - MIT1002_00808 0.48 +0.0

Or see this region's nucleotide sequence