Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00795 and MIT1002_00796 are separated by 762 nucleotides MIT1002_00796 and MIT1002_00797 are separated by 208 nucleotides
MIT1002_00795: MIT1002_00795 - Nucleoside triphosphate pyrophosphohydrolase, at 881,296 to 882,252
_00795
MIT1002_00796: MIT1002_00796 - hydroxymethylglutaryl-CoA reductase (NADPH), at 883,015 to 884,181
_00796
MIT1002_00797: MIT1002_00797 - type IV pilus biogenesis/stability protein PilW, at 884,390 to 885,037
_00797
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2 at 882.089 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.147 kb on - strand, within MIT1002_00795 at 882.155 kb on + strand, within MIT1002_00795 at 882.263 kb on - strand at 882.269 kb on + strand at 882.351 kb on - strand at 882.403 kb on + strand at 882.411 kb on + strand at 882.489 kb on + strand at 882.499 kb on + strand at 882.535 kb on + strand at 882.543 kb on - strand at 882.544 kb on - strand at 882.730 kb on + strand at 882.730 kb on + strand at 882.732 kb on - strand at 882.738 kb on - strand at 882.803 kb on - strand at 882.829 kb on + strand at 882.851 kb on + strand at 882.859 kb on - strand at 882.859 kb on - strand at 882.863 kb on - strand at 882.964 kb on - strand at 882.989 kb on + strand at 883.003 kb on - strand at 883.068 kb on + strand at 883.068 kb on + strand at 883.128 kb on + strand at 883.138 kb on + strand, within MIT1002_00796 at 883.141 kb on - strand, within MIT1002_00796 at 883.143 kb on + strand, within MIT1002_00796 at 883.146 kb on - strand, within MIT1002_00796 at 883.146 kb on - strand, within MIT1002_00796 at 883.276 kb on + strand, within MIT1002_00796 at 883.314 kb on - strand, within MIT1002_00796 at 883.368 kb on + strand, within MIT1002_00796 at 883.376 kb on - strand, within MIT1002_00796 at 883.383 kb on + strand, within MIT1002_00796 at 883.473 kb on + strand, within MIT1002_00796 at 883.516 kb on + strand, within MIT1002_00796 at 883.524 kb on - strand, within MIT1002_00796 at 883.560 kb on + strand, within MIT1002_00796 at 883.567 kb on + strand, within MIT1002_00796 at 883.578 kb on + strand, within MIT1002_00796 at 883.578 kb on + strand, within MIT1002_00796 at 883.586 kb on - strand, within MIT1002_00796 at 883.636 kb on + strand, within MIT1002_00796 at 883.639 kb on - strand, within MIT1002_00796 at 883.686 kb on + strand, within MIT1002_00796 at 883.728 kb on + strand, within MIT1002_00796 at 883.761 kb on + strand, within MIT1002_00796 at 883.799 kb on - strand, within MIT1002_00796 at 883.839 kb on + strand, within MIT1002_00796 at 883.861 kb on + strand, within MIT1002_00796 at 883.919 kb on + strand, within MIT1002_00796 at 883.926 kb on + strand, within MIT1002_00796 at 883.931 kb on + strand, within MIT1002_00796 at 883.937 kb on - strand, within MIT1002_00796 at 883.939 kb on - strand, within MIT1002_00796 at 883.939 kb on - strand, within MIT1002_00796 at 883.992 kb on - strand, within MIT1002_00796 at 884.003 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.061 kb on + strand, within MIT1002_00796 at 884.069 kb on - strand at 884.069 kb on - strand at 884.069 kb on - strand at 884.109 kb on + strand at 884.109 kb on + strand at 884.109 kb on + strand at 884.134 kb on - strand at 884.137 kb on + strand at 884.165 kb on + strand at 884.225 kb on + strand at 884.314 kb on - strand at 884.492 kb on + strand, within MIT1002_00797 at 884.501 kb on + strand, within MIT1002_00797 at 884.509 kb on - strand, within MIT1002_00797 at 884.509 kb on - strand, within MIT1002_00797 at 884.555 kb on + strand, within MIT1002_00797 at 884.563 kb on - strand, within MIT1002_00797 at 884.637 kb on + strand, within MIT1002_00797 at 884.642 kb on + strand, within MIT1002_00797 at 884.650 kb on - strand, within MIT1002_00797 at 884.678 kb on - strand, within MIT1002_00797 at 884.690 kb on + strand, within MIT1002_00797 at 884.698 kb on - strand, within MIT1002_00797 at 884.753 kb on + strand, within MIT1002_00797 at 884.753 kb on + strand, within MIT1002_00797 at 884.808 kb on + strand, within MIT1002_00797 at 884.821 kb on - strand, within MIT1002_00797 at 884.901 kb on + strand, within MIT1002_00797 at 884.928 kb on - strand, within MIT1002_00797 at 884.938 kb on - strand, within MIT1002_00797
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 882,089 - MIT1002_00795 0.83 -0.5 882,147 - MIT1002_00795 0.89 -0.7 882,147 - MIT1002_00795 0.89 -1.1 882,147 - MIT1002_00795 0.89 +0.1 882,155 + MIT1002_00795 0.90 -0.2 882,263 - +0.2 882,269 + +1.1 882,351 - +1.0 882,403 + -0.1 882,411 + -0.4 882,489 + +0.5 882,499 + +0.9 882,535 + -1.2 882,543 - +1.3 882,544 - +0.1 882,730 + -0.7 882,730 + +1.4 882,732 - -1.6 882,738 - -0.3 882,803 - +1.0 882,829 + -0.6 882,851 + -0.0 882,859 - -0.9 882,859 - +0.0 882,863 - -0.3 882,964 - -0.4 882,989 + +0.4 883,003 - +1.5 883,068 + -0.4 883,068 + -1.2 883,128 + +0.8 883,138 + MIT1002_00796 0.11 +0.3 883,141 - MIT1002_00796 0.11 -0.8 883,143 + MIT1002_00796 0.11 +1.0 883,146 - MIT1002_00796 0.11 -1.1 883,146 - MIT1002_00796 0.11 -1.6 883,276 + MIT1002_00796 0.22 +0.8 883,314 - MIT1002_00796 0.26 -0.8 883,368 + MIT1002_00796 0.30 +2.4 883,376 - MIT1002_00796 0.31 +0.2 883,383 + MIT1002_00796 0.32 +1.6 883,473 + MIT1002_00796 0.39 -0.7 883,516 + MIT1002_00796 0.43 +0.4 883,524 - MIT1002_00796 0.44 +1.7 883,560 + MIT1002_00796 0.47 -1.0 883,567 + MIT1002_00796 0.47 -2.2 883,578 + MIT1002_00796 0.48 -1.0 883,578 + MIT1002_00796 0.48 -1.3 883,586 - MIT1002_00796 0.49 +0.2 883,636 + MIT1002_00796 0.53 -0.1 883,639 - MIT1002_00796 0.53 +0.4 883,686 + MIT1002_00796 0.57 +0.5 883,728 + MIT1002_00796 0.61 +0.3 883,761 + MIT1002_00796 0.64 -1.0 883,799 - MIT1002_00796 0.67 +0.2 883,839 + MIT1002_00796 0.71 -1.0 883,861 + MIT1002_00796 0.72 -0.6 883,919 + MIT1002_00796 0.77 -0.9 883,926 + MIT1002_00796 0.78 -0.3 883,931 + MIT1002_00796 0.78 +0.3 883,937 - MIT1002_00796 0.79 -0.3 883,939 - MIT1002_00796 0.79 -0.4 883,939 - MIT1002_00796 0.79 +0.1 883,992 - MIT1002_00796 0.84 -1.5 884,003 + MIT1002_00796 0.85 +0.2 884,061 + MIT1002_00796 0.90 +0.0 884,061 + MIT1002_00796 0.90 -0.6 884,061 + MIT1002_00796 0.90 -0.7 884,061 + MIT1002_00796 0.90 +1.4 884,069 - +0.4 884,069 - +0.1 884,069 - +1.2 884,109 + +0.4 884,109 + +1.0 884,109 + -0.8 884,134 - +0.0 884,137 + +1.7 884,165 + +0.6 884,225 + +0.6 884,314 - +1.4 884,492 + MIT1002_00797 0.16 +0.1 884,501 + MIT1002_00797 0.17 -0.1 884,509 - MIT1002_00797 0.18 -1.1 884,509 - MIT1002_00797 0.18 -0.2 884,555 + MIT1002_00797 0.25 -0.4 884,563 - MIT1002_00797 0.27 +0.5 884,637 + MIT1002_00797 0.38 -0.7 884,642 + MIT1002_00797 0.39 +0.1 884,650 - MIT1002_00797 0.40 -1.1 884,678 - MIT1002_00797 0.44 -0.2 884,690 + MIT1002_00797 0.46 -0.6 884,698 - MIT1002_00797 0.48 +0.0 884,753 + MIT1002_00797 0.56 +1.5 884,753 + MIT1002_00797 0.56 +0.2 884,808 + MIT1002_00797 0.65 -0.6 884,821 - MIT1002_00797 0.67 +0.2 884,901 + MIT1002_00797 0.79 +1.4 884,928 - MIT1002_00797 0.83 -0.5 884,938 - MIT1002_00797 0.85 +0.4
Or see this region's nucleotide sequence