Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00727

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00725 and MIT1002_00726 are separated by 55 nucleotidesMIT1002_00726 and MIT1002_00727 are separated by 65 nucleotidesMIT1002_00727 and MIT1002_00728 are separated by 227 nucleotides MIT1002_00725: MIT1002_00725 - D-galactonate dehydratase, at 793,324 to 794,508 _00725 MIT1002_00726: MIT1002_00726 - aldolase II superfamily protein, at 794,564 to 795,331 _00726 MIT1002_00727: MIT1002_00727 - nucleoside triphosphatase YtkD, at 795,397 to 795,942 _00727 MIT1002_00728: MIT1002_00728 - Multidrug transporter MdtA, at 796,170 to 797,219 _00728 Position (kb) 795 796Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 794.426 kb on + strandat 794.426 kb on + strandat 794.434 kb on - strandat 794.434 kb on - strandat 794.550 kb on - strandat 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.652 kb on + strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.660 kb on - strand, within MIT1002_00726at 794.677 kb on + strand, within MIT1002_00726at 794.727 kb on - strand, within MIT1002_00726at 794.728 kb on - strand, within MIT1002_00726at 794.790 kb on + strand, within MIT1002_00726at 794.798 kb on + strand, within MIT1002_00726at 794.799 kb on - strand, within MIT1002_00726at 794.799 kb on - strand, within MIT1002_00726at 794.805 kb on - strand, within MIT1002_00726at 794.805 kb on - strand, within MIT1002_00726at 794.839 kb on + strand, within MIT1002_00726at 794.881 kb on + strand, within MIT1002_00726at 794.882 kb on + strand, within MIT1002_00726at 794.882 kb on + strand, within MIT1002_00726at 794.890 kb on - strand, within MIT1002_00726at 794.947 kb on + strand, within MIT1002_00726at 794.954 kb on - strand, within MIT1002_00726at 794.985 kb on - strand, within MIT1002_00726at 794.998 kb on + strand, within MIT1002_00726at 795.016 kb on - strand, within MIT1002_00726at 795.047 kb on - strand, within MIT1002_00726at 795.064 kb on + strand, within MIT1002_00726at 795.064 kb on + strand, within MIT1002_00726at 795.093 kb on + strand, within MIT1002_00726at 795.093 kb on + strand, within MIT1002_00726at 795.111 kb on + strand, within MIT1002_00726at 795.128 kb on + strand, within MIT1002_00726at 795.129 kb on - strand, within MIT1002_00726at 795.151 kb on + strand, within MIT1002_00726at 795.151 kb on + strand, within MIT1002_00726at 795.154 kb on - strand, within MIT1002_00726at 795.188 kb on - strand, within MIT1002_00726at 795.199 kb on + strand, within MIT1002_00726at 795.237 kb on + strand, within MIT1002_00726at 795.307 kb on + strandat 795.307 kb on + strandat 795.308 kb on + strandat 795.344 kb on + strandat 795.429 kb on - strandat 795.449 kb on - strandat 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.480 kb on + strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.488 kb on - strand, within MIT1002_00727at 795.490 kb on - strand, within MIT1002_00727at 795.494 kb on + strand, within MIT1002_00727at 795.537 kb on + strand, within MIT1002_00727at 795.545 kb on - strand, within MIT1002_00727at 795.600 kb on + strand, within MIT1002_00727at 795.637 kb on + strand, within MIT1002_00727at 795.669 kb on + strand, within MIT1002_00727at 795.677 kb on - strand, within MIT1002_00727at 795.798 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.808 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 795.833 kb on + strand, within MIT1002_00727at 796.064 kb on - strandat 796.072 kb on - strandat 796.121 kb on - strandat 796.166 kb on + strandat 796.166 kb on + strandat 796.167 kb on - strandat 796.215 kb on - strandat 796.215 kb on - strandat 796.225 kb on + strandat 796.233 kb on - strandat 796.270 kb on + strandat 796.397 kb on - strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.486 kb on + strand, within MIT1002_00728at 796.507 kb on + strand, within MIT1002_00728at 796.564 kb on - strand, within MIT1002_00728at 796.578 kb on - strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.601 kb on + strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.609 kb on - strand, within MIT1002_00728at 796.630 kb on - strand, within MIT1002_00728at 796.632 kb on + strand, within MIT1002_00728at 796.680 kb on + strand, within MIT1002_00728at 796.751 kb on + strand, within MIT1002_00728at 796.754 kb on - strand, within MIT1002_00728at 796.763 kb on - strand, within MIT1002_00728at 796.782 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.838 kb on + strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.846 kb on - strand, within MIT1002_00728at 796.909 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.911 kb on + strand, within MIT1002_00728at 796.917 kb on - strand, within MIT1002_00728at 796.919 kb on - strand, within MIT1002_00728at 796.936 kb on + strand, within MIT1002_00728at 796.940 kb on + strand, within MIT1002_00728

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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794,426 + -0.3
794,426 + -0.0
794,434 - +0.3
794,434 - -1.0
794,550 - -0.2
794,652 + MIT1002_00726 0.11 +0.2
794,652 + MIT1002_00726 0.11 +1.0
794,652 + MIT1002_00726 0.11 -2.0
794,652 + MIT1002_00726 0.11 -0.2
794,660 - MIT1002_00726 0.12 +0.5
794,660 - MIT1002_00726 0.12 +0.1
794,660 - MIT1002_00726 0.12 +0.8
794,677 + MIT1002_00726 0.15 -0.4
794,727 - MIT1002_00726 0.21 +1.1
794,728 - MIT1002_00726 0.21 +0.7
794,790 + MIT1002_00726 0.29 -0.8
794,798 + MIT1002_00726 0.30 +0.1
794,799 - MIT1002_00726 0.31 +0.9
794,799 - MIT1002_00726 0.31 +0.2
794,805 - MIT1002_00726 0.31 -0.4
794,805 - MIT1002_00726 0.31 -0.3
794,839 + MIT1002_00726 0.36 -2.3
794,881 + MIT1002_00726 0.41 -1.1
794,882 + MIT1002_00726 0.41 -0.1
794,882 + MIT1002_00726 0.41 -4.0
794,890 - MIT1002_00726 0.42 +1.4
794,947 + MIT1002_00726 0.50 +0.1
794,954 - MIT1002_00726 0.51 +0.2
794,985 - MIT1002_00726 0.55 -0.4
794,998 + MIT1002_00726 0.57 -0.4
795,016 - MIT1002_00726 0.59 -1.1
795,047 - MIT1002_00726 0.63 -2.1
795,064 + MIT1002_00726 0.65 +1.9
795,064 + MIT1002_00726 0.65 -0.3
795,093 + MIT1002_00726 0.69 +1.4
795,093 + MIT1002_00726 0.69 +0.3
795,111 + MIT1002_00726 0.71 +1.9
795,128 + MIT1002_00726 0.73 +1.4
795,129 - MIT1002_00726 0.74 -2.2
795,151 + MIT1002_00726 0.76 -0.0
795,151 + MIT1002_00726 0.76 -1.0
795,154 - MIT1002_00726 0.77 -0.4
795,188 - MIT1002_00726 0.81 -0.3
795,199 + MIT1002_00726 0.83 +0.0
795,237 + MIT1002_00726 0.88 -0.3
795,307 + -0.3
795,307 + -0.2
795,308 + -0.2
795,344 + -0.7
795,429 - +0.5
795,449 - +0.2
795,480 + MIT1002_00727 0.15 -0.1
795,480 + MIT1002_00727 0.15 +0.6
795,480 + MIT1002_00727 0.15 +0.4
795,480 + MIT1002_00727 0.15 +1.6
795,488 - MIT1002_00727 0.17 +1.5
795,488 - MIT1002_00727 0.17 +0.1
795,488 - MIT1002_00727 0.17 +1.3
795,490 - MIT1002_00727 0.17 +1.3
795,494 + MIT1002_00727 0.18 -0.6
795,537 + MIT1002_00727 0.26 +0.1
795,545 - MIT1002_00727 0.27 +0.3
795,600 + MIT1002_00727 0.37 -0.6
795,637 + MIT1002_00727 0.44 -1.4
795,669 + MIT1002_00727 0.50 +0.6
795,677 - MIT1002_00727 0.51 +0.8
795,798 + MIT1002_00727 0.73 +1.0
795,808 + MIT1002_00727 0.75 +1.2
795,808 + MIT1002_00727 0.75 +1.1
795,833 + MIT1002_00727 0.80 +0.5
795,833 + MIT1002_00727 0.80 -1.4
796,064 - -0.2
796,072 - +0.0
796,121 - +0.1
796,166 + -2.2
796,166 + -0.5
796,167 - +0.2
796,215 - +0.5
796,215 - +0.8
796,225 + -0.6
796,233 - -1.1
796,270 + +0.7
796,397 - MIT1002_00728 0.22 +1.7
796,486 + MIT1002_00728 0.30 +0.0
796,486 + MIT1002_00728 0.30 +0.6
796,486 + MIT1002_00728 0.30 +1.5
796,507 + MIT1002_00728 0.32 -1.5
796,564 - MIT1002_00728 0.38 +0.2
796,578 - MIT1002_00728 0.39 -0.5
796,601 + MIT1002_00728 0.41 +0.5
796,601 + MIT1002_00728 0.41 -0.6
796,601 + MIT1002_00728 0.41 +0.9
796,601 + MIT1002_00728 0.41 +0.6
796,601 + MIT1002_00728 0.41 -0.9
796,609 - MIT1002_00728 0.42 +0.2
796,609 - MIT1002_00728 0.42 +0.1
796,609 - MIT1002_00728 0.42 -0.2
796,609 - MIT1002_00728 0.42 -0.2
796,630 - MIT1002_00728 0.44 +0.1
796,632 + MIT1002_00728 0.44 +0.5
796,680 + MIT1002_00728 0.49 +0.7
796,751 + MIT1002_00728 0.55 +0.0
796,754 - MIT1002_00728 0.56 +0.2
796,763 - MIT1002_00728 0.56 +1.2
796,782 + MIT1002_00728 0.58 -0.6
796,838 + MIT1002_00728 0.64 -0.3
796,838 + MIT1002_00728 0.64 -0.8
796,846 - MIT1002_00728 0.64 +1.8
796,846 - MIT1002_00728 0.64 +0.1
796,909 + MIT1002_00728 0.70 -3.1
796,911 + MIT1002_00728 0.71 -1.8
796,911 + MIT1002_00728 0.71 +0.0
796,917 - MIT1002_00728 0.71 +0.7
796,919 - MIT1002_00728 0.71 -0.5
796,936 + MIT1002_00728 0.73 +0.7
796,940 + MIT1002_00728 0.73 +0.9

Or see this region's nucleotide sequence