Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00673 and MIT1002_00674 are separated by 127 nucleotides MIT1002_00674 and MIT1002_00675 are separated by 136 nucleotides MIT1002_00675 and MIT1002_00676 are separated by 124 nucleotides
MIT1002_00673: MIT1002_00673 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 736,920 to 737,723
_00673
MIT1002_00674: MIT1002_00674 - esterase YqiA, at 737,851 to 738,432
_00674
MIT1002_00675: MIT1002_00675 - DNA topoisomerase 4 subunit B, at 738,569 to 740,464
_00675
MIT1002_00676: MIT1002_00676 - hypothetical protein, at 740,589 to 741,263
_00676
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 737.643 kb on - strand at 737.726 kb on - strand at 737.738 kb on + strand at 737.796 kb on + strand at 737.818 kb on + strand at 737.869 kb on + strand at 737.912 kb on + strand, within MIT1002_00674 at 737.920 kb on - strand, within MIT1002_00674 at 737.958 kb on - strand, within MIT1002_00674 at 737.968 kb on - strand, within MIT1002_00674 at 737.968 kb on - strand, within MIT1002_00674 at 738.018 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.126 kb on - strand, within MIT1002_00674 at 738.136 kb on + strand, within MIT1002_00674 at 738.161 kb on + strand, within MIT1002_00674 at 738.161 kb on + strand, within MIT1002_00674 at 738.170 kb on - strand, within MIT1002_00674 at 738.317 kb on - strand, within MIT1002_00674 at 738.345 kb on - strand, within MIT1002_00674 at 738.385 kb on - strand at 738.448 kb on + strand at 738.464 kb on + strand at 738.464 kb on + strand at 738.479 kb on + strand at 738.515 kb on + strand at 738.515 kb on + strand at 738.515 kb on + strand at 740.529 kb on - strand at 740.550 kb on + strand at 740.654 kb on + strand at 740.728 kb on + strand, within MIT1002_00676 at 740.791 kb on - strand, within MIT1002_00676 at 740.816 kb on + strand, within MIT1002_00676 at 740.824 kb on + strand, within MIT1002_00676 at 740.824 kb on - strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.852 kb on + strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.860 kb on - strand, within MIT1002_00676 at 740.884 kb on - strand, within MIT1002_00676 at 740.922 kb on + strand, within MIT1002_00676 at 741.003 kb on - strand, within MIT1002_00676 at 741.010 kb on + strand, within MIT1002_00676 at 741.026 kb on + strand, within MIT1002_00676 at 741.129 kb on + strand, within MIT1002_00676 at 741.130 kb on - strand, within MIT1002_00676 at 741.132 kb on + strand, within MIT1002_00676 at 741.134 kb on + strand, within MIT1002_00676 at 741.140 kb on - strand, within MIT1002_00676 at 741.174 kb on - strand, within MIT1002_00676 at 741.309 kb on + strand at 741.309 kb on + strand at 741.312 kb on - strand at 741.314 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.330 kb on + strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.338 kb on - strand at 741.348 kb on - strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.392 kb on + strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.400 kb on - strand at 741.408 kb on - strand at 741.417 kb on + strand at 741.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 737,643 - +0.2 737,726 - -0.0 737,738 + -2.7 737,796 + -0.6 737,818 + +0.4 737,869 + +0.2 737,912 + MIT1002_00674 0.10 +0.1 737,920 - MIT1002_00674 0.12 +0.3 737,958 - MIT1002_00674 0.18 +1.1 737,968 - MIT1002_00674 0.20 +0.8 737,968 - MIT1002_00674 0.20 +1.9 738,018 + MIT1002_00674 0.29 -1.9 738,023 + MIT1002_00674 0.30 +1.1 738,023 + MIT1002_00674 0.30 +1.0 738,023 + MIT1002_00674 0.30 +4.6 738,126 - MIT1002_00674 0.47 -2.1 738,136 + MIT1002_00674 0.49 +1.2 738,161 + MIT1002_00674 0.53 -0.6 738,161 + MIT1002_00674 0.53 +0.4 738,170 - MIT1002_00674 0.55 +0.4 738,317 - MIT1002_00674 0.80 -0.6 738,345 - MIT1002_00674 0.85 +0.8 738,385 - -0.8 738,448 + +2.3 738,464 + -0.5 738,464 + -1.1 738,479 + +0.6 738,515 + -1.3 738,515 + +2.0 738,515 + -0.5 740,529 - -1.4 740,550 + -0.2 740,654 + +0.4 740,728 + MIT1002_00676 0.21 -0.1 740,791 - MIT1002_00676 0.30 -1.8 740,816 + MIT1002_00676 0.34 +0.4 740,824 + MIT1002_00676 0.35 -1.2 740,824 - MIT1002_00676 0.35 -0.4 740,852 + MIT1002_00676 0.39 -0.3 740,852 + MIT1002_00676 0.39 +0.4 740,852 + MIT1002_00676 0.39 -0.3 740,860 - MIT1002_00676 0.40 +0.9 740,860 - MIT1002_00676 0.40 -0.4 740,860 - MIT1002_00676 0.40 +0.5 740,860 - MIT1002_00676 0.40 +0.2 740,884 - MIT1002_00676 0.44 -1.5 740,922 + MIT1002_00676 0.49 -1.0 741,003 - MIT1002_00676 0.61 -1.2 741,010 + MIT1002_00676 0.62 -0.2 741,026 + MIT1002_00676 0.65 -0.6 741,129 + MIT1002_00676 0.80 -0.8 741,130 - MIT1002_00676 0.80 +0.1 741,132 + MIT1002_00676 0.80 +1.4 741,134 + MIT1002_00676 0.81 -0.8 741,140 - MIT1002_00676 0.82 -1.5 741,174 - MIT1002_00676 0.87 +0.2 741,309 + -2.4 741,309 + -2.8 741,312 - +0.8 741,314 + +0.2 741,330 + +0.6 741,330 + +1.0 741,330 + +0.4 741,338 - +1.0 741,338 - -0.4 741,338 - +0.1 741,348 - +0.4 741,392 + +0.9 741,392 + -0.0 741,392 + +0.5 741,400 - +0.9 741,400 - -0.2 741,400 - +0.2 741,408 - +0.1 741,417 + +1.8 741,425 - -1.3
Or see this region's nucleotide sequence