Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00668 and MIT1002_00669 are separated by 210 nucleotides MIT1002_00669 and MIT1002_00670 are separated by 139 nucleotides MIT1002_00670 and MIT1002_00671 are separated by 295 nucleotides MIT1002_00671 and MIT1002_00672 overlap by 52 nucleotides
MIT1002_00668: MIT1002_00668 - Ion transport protein, at 732,828 to 733,682
_00668
MIT1002_00669: MIT1002_00669 - hypothetical protein, at 733,893 to 734,051
_00669
MIT1002_00670: MIT1002_00670 - Outer membrane protein TolC precursor, at 734,191 to 735,564
_00670
MIT1002_00671: MIT1002_00671 - ADP-ribose pyrophosphatase, at 735,860 to 736,486
_00671
MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923
_00672
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.215 kb on + strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.223 kb on - strand, within MIT1002_00668 at 733.282 kb on + strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.290 kb on - strand, within MIT1002_00668 at 733.379 kb on + strand, within MIT1002_00668 at 733.393 kb on + strand, within MIT1002_00668 at 733.496 kb on - strand, within MIT1002_00668 at 733.498 kb on + strand, within MIT1002_00668 at 733.506 kb on - strand, within MIT1002_00668 at 733.629 kb on - strand at 733.667 kb on + strand at 733.690 kb on - strand at 733.721 kb on + strand at 733.938 kb on + strand, within MIT1002_00669 at 733.941 kb on - strand, within MIT1002_00669 at 733.946 kb on - strand, within MIT1002_00669 at 734.056 kb on + strand at 734.077 kb on + strand at 734.079 kb on + strand at 734.128 kb on + strand at 734.133 kb on + strand at 734.183 kb on + strand at 734.310 kb on - strand at 734.351 kb on - strand, within MIT1002_00670 at 734.353 kb on + strand, within MIT1002_00670 at 734.375 kb on - strand, within MIT1002_00670 at 734.800 kb on + strand, within MIT1002_00670 at 734.835 kb on - strand, within MIT1002_00670 at 734.988 kb on - strand, within MIT1002_00670 at 735.030 kb on + strand, within MIT1002_00670 at 735.394 kb on - strand, within MIT1002_00670 at 735.614 kb on - strand at 735.627 kb on + strand at 735.795 kb on + strand at 735.822 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.910 kb on + strand at 735.918 kb on - strand at 735.918 kb on - strand at 735.993 kb on - strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.020 kb on + strand, within MIT1002_00671 at 736.094 kb on - strand, within MIT1002_00671 at 736.139 kb on + strand, within MIT1002_00671 at 736.161 kb on + strand, within MIT1002_00671 at 736.176 kb on + strand, within MIT1002_00671 at 736.177 kb on - strand, within MIT1002_00671 at 736.186 kb on + strand, within MIT1002_00671 at 736.186 kb on - strand, within MIT1002_00671 at 736.198 kb on + strand, within MIT1002_00671 at 736.237 kb on + strand, within MIT1002_00671 at 736.299 kb on - strand, within MIT1002_00671 at 736.321 kb on - strand, within MIT1002_00671 at 736.367 kb on - strand, within MIT1002_00671 at 736.421 kb on - strand, within MIT1002_00671 at 736.469 kb on - strand at 736.471 kb on + strand at 736.497 kb on - strand, within MIT1002_00672 at 736.553 kb on + strand, within MIT1002_00672 at 736.556 kb on - strand, within MIT1002_00672 at 736.561 kb on - strand, within MIT1002_00672
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 733,215 + MIT1002_00668 0.45 +0.5 733,215 + MIT1002_00668 0.45 -0.9 733,215 + MIT1002_00668 0.45 +0.2 733,215 + MIT1002_00668 0.45 +0.8 733,215 + MIT1002_00668 0.45 -1.0 733,223 - MIT1002_00668 0.46 -1.4 733,223 - MIT1002_00668 0.46 -0.7 733,223 - MIT1002_00668 0.46 -1.7 733,223 - MIT1002_00668 0.46 +0.6 733,223 - MIT1002_00668 0.46 -0.6 733,223 - MIT1002_00668 0.46 -1.0 733,282 + MIT1002_00668 0.53 -0.5 733,290 - MIT1002_00668 0.54 +1.0 733,290 - MIT1002_00668 0.54 -0.4 733,379 + MIT1002_00668 0.64 +0.9 733,393 + MIT1002_00668 0.66 -1.3 733,496 - MIT1002_00668 0.78 -0.2 733,498 + MIT1002_00668 0.78 +0.7 733,506 - MIT1002_00668 0.79 +0.7 733,629 - -1.4 733,667 + -1.1 733,690 - +0.7 733,721 + -0.3 733,938 + MIT1002_00669 0.28 -0.5 733,941 - MIT1002_00669 0.30 -1.0 733,946 - MIT1002_00669 0.33 -0.4 734,056 + -1.4 734,077 + +0.0 734,079 + +1.0 734,128 + +1.4 734,133 + -0.5 734,183 + -0.2 734,310 - -0.6 734,351 - MIT1002_00670 0.12 -2.3 734,353 + MIT1002_00670 0.12 -0.9 734,375 - MIT1002_00670 0.13 -0.6 734,800 + MIT1002_00670 0.44 -1.2 734,835 - MIT1002_00670 0.47 -0.6 734,988 - MIT1002_00670 0.58 -1.2 735,030 + MIT1002_00670 0.61 -0.6 735,394 - MIT1002_00670 0.88 -0.6 735,614 - -1.2 735,627 + -1.4 735,795 + -0.9 735,822 + -0.1 735,910 + +0.4 735,910 + -0.3 735,910 + +0.6 735,918 - -0.8 735,918 - +0.5 735,993 - MIT1002_00671 0.21 -0.7 736,020 + MIT1002_00671 0.26 +2.0 736,020 + MIT1002_00671 0.26 +0.3 736,094 - MIT1002_00671 0.37 +0.7 736,139 + MIT1002_00671 0.44 +1.1 736,161 + MIT1002_00671 0.48 +0.3 736,176 + MIT1002_00671 0.50 +2.8 736,177 - MIT1002_00671 0.51 +1.4 736,186 + MIT1002_00671 0.52 -0.0 736,186 - MIT1002_00671 0.52 -1.1 736,198 + MIT1002_00671 0.54 -0.0 736,237 + MIT1002_00671 0.60 +0.6 736,299 - MIT1002_00671 0.70 +1.4 736,321 - MIT1002_00671 0.74 +0.2 736,367 - MIT1002_00671 0.81 -0.0 736,421 - MIT1002_00671 0.89 +0.6 736,469 - -1.0 736,471 + -0.2 736,497 - MIT1002_00672 0.13 -1.1 736,553 + MIT1002_00672 0.24 +1.1 736,556 - MIT1002_00672 0.25 +0.4 736,561 - MIT1002_00672 0.26 -0.5
Or see this region's nucleotide sequence