Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00596

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00595 and MIT1002_00596 are separated by 178 nucleotidesMIT1002_00596 and MIT1002_00597 are separated by 330 nucleotides MIT1002_00595: MIT1002_00595 - hypothetical protein, at 645,193 to 645,717 _00595 MIT1002_00596: MIT1002_00596 - putative toxin-antitoxin system antitoxin component, at 645,896 to 646,321 _00596 MIT1002_00597: MIT1002_00597 - Site-specific recombinase XerD, at 646,652 to 648,193 _00597 Position (kb) 645 646 647Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 644.933 kb on - strandat 644.986 kb on - strandat 644.986 kb on - strandat 644.993 kb on - strandat 645.050 kb on + strandat 645.058 kb on - strandat 645.058 kb on - strandat 645.196 kb on - strandat 645.234 kb on + strandat 645.273 kb on + strand, within MIT1002_00595at 645.273 kb on + strand, within MIT1002_00595at 645.291 kb on + strand, within MIT1002_00595at 645.299 kb on + strand, within MIT1002_00595at 645.300 kb on - strand, within MIT1002_00595at 645.307 kb on - strand, within MIT1002_00595at 645.385 kb on + strand, within MIT1002_00595at 645.388 kb on - strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.390 kb on + strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.398 kb on - strand, within MIT1002_00595at 645.403 kb on - strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.405 kb on + strand, within MIT1002_00595at 645.413 kb on - strand, within MIT1002_00595at 645.430 kb on - strand, within MIT1002_00595at 645.493 kb on + strand, within MIT1002_00595at 645.501 kb on - strand, within MIT1002_00595at 645.589 kb on + strand, within MIT1002_00595at 645.605 kb on + strand, within MIT1002_00595at 645.640 kb on + strand, within MIT1002_00595at 645.648 kb on - strand, within MIT1002_00595at 645.699 kb on + strandat 645.706 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.711 kb on + strandat 645.719 kb on - strandat 645.719 kb on - strandat 645.746 kb on + strandat 645.754 kb on - strandat 645.754 kb on - strandat 645.781 kb on + strandat 645.822 kb on + strandat 645.858 kb on - strandat 645.942 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.988 kb on + strand, within MIT1002_00596at 645.996 kb on - strand, within MIT1002_00596at 645.998 kb on + strand, within MIT1002_00596at 646.006 kb on - strand, within MIT1002_00596at 646.051 kb on + strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.072 kb on - strand, within MIT1002_00596at 646.108 kb on - strand, within MIT1002_00596at 646.110 kb on - strand, within MIT1002_00596at 646.120 kb on - strand, within MIT1002_00596at 646.123 kb on - strand, within MIT1002_00596at 646.164 kb on + strand, within MIT1002_00596at 646.187 kb on + strand, within MIT1002_00596at 646.245 kb on + strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.253 kb on - strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.263 kb on + strand, within MIT1002_00596at 646.271 kb on - strand, within MIT1002_00596at 646.303 kb on + strandat 646.387 kb on + strandat 646.387 kb on + strandat 646.394 kb on - strandat 646.458 kb on + strandat 646.468 kb on + strandat 646.490 kb on + strandat 646.491 kb on + strandat 646.501 kb on + strandat 646.509 kb on - strandat 646.550 kb on + strandat 646.550 kb on + strandat 646.575 kb on + strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.583 kb on - strandat 646.590 kb on + strandat 646.598 kb on - strandat 646.687 kb on + strandat 646.687 kb on - strandat 646.702 kb on - strandat 646.711 kb on + strandat 646.713 kb on + strandat 646.720 kb on - strandat 646.818 kb on - strand, within MIT1002_00597at 646.819 kb on - strand, within MIT1002_00597at 646.858 kb on - strand, within MIT1002_00597at 646.918 kb on + strand, within MIT1002_00597at 646.920 kb on + strand, within MIT1002_00597at 646.958 kb on + strand, within MIT1002_00597at 646.969 kb on + strand, within MIT1002_00597at 647.009 kb on + strand, within MIT1002_00597at 647.087 kb on + strand, within MIT1002_00597at 647.161 kb on - strand, within MIT1002_00597at 647.176 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.261 kb on + strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.269 kb on - strand, within MIT1002_00597at 647.279 kb on - strand, within MIT1002_00597at 647.287 kb on + strand, within MIT1002_00597at 647.304 kb on + strand, within MIT1002_00597

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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644,933 - +0.0
644,986 - +0.2
644,986 - -0.5
644,993 - -0.3
645,050 + +2.2
645,058 - -0.4
645,058 - -0.7
645,196 - -1.3
645,234 + +0.7
645,273 + MIT1002_00595 0.15 -1.7
645,273 + MIT1002_00595 0.15 -0.3
645,291 + MIT1002_00595 0.19 +0.1
645,299 + MIT1002_00595 0.20 -0.2
645,300 - MIT1002_00595 0.20 +0.7
645,307 - MIT1002_00595 0.22 -0.4
645,385 + MIT1002_00595 0.37 -0.6
645,388 - MIT1002_00595 0.37 +1.1
645,390 + MIT1002_00595 0.38 +2.4
645,390 + MIT1002_00595 0.38 +0.8
645,390 + MIT1002_00595 0.38 +0.5
645,398 - MIT1002_00595 0.39 +0.2
645,398 - MIT1002_00595 0.39 -0.2
645,403 - MIT1002_00595 0.40 +0.2
645,405 + MIT1002_00595 0.40 +2.3
645,405 + MIT1002_00595 0.40 -0.6
645,413 - MIT1002_00595 0.42 -1.2
645,430 - MIT1002_00595 0.45 -1.1
645,493 + MIT1002_00595 0.57 -0.9
645,501 - MIT1002_00595 0.59 -0.9
645,589 + MIT1002_00595 0.75 +1.4
645,605 + MIT1002_00595 0.78 +0.2
645,640 + MIT1002_00595 0.85 +1.2
645,648 - MIT1002_00595 0.87 +0.9
645,699 + -3.5
645,706 + -0.4
645,711 + -0.1
645,711 + -0.5
645,711 + +0.5
645,719 - +0.5
645,719 - -0.1
645,746 + +0.4
645,754 - +1.2
645,754 - -0.6
645,781 + +0.8
645,822 + +0.7
645,858 - +0.8
645,942 + MIT1002_00596 0.11 +0.4
645,988 + MIT1002_00596 0.22 +0.4
645,988 + MIT1002_00596 0.22 +0.2
645,988 + MIT1002_00596 0.22 +0.7
645,996 - MIT1002_00596 0.23 +2.0
645,998 + MIT1002_00596 0.24 +0.3
646,006 - MIT1002_00596 0.26 -0.2
646,051 + MIT1002_00596 0.36 -1.7
646,072 - MIT1002_00596 0.41 -0.2
646,072 - MIT1002_00596 0.41 -0.2
646,108 - MIT1002_00596 0.50 +0.9
646,110 - MIT1002_00596 0.50 -0.1
646,120 - MIT1002_00596 0.53 +0.5
646,123 - MIT1002_00596 0.53 +1.2
646,164 + MIT1002_00596 0.63 -1.6
646,187 + MIT1002_00596 0.68 -1.0
646,245 + MIT1002_00596 0.82 -0.5
646,253 - MIT1002_00596 0.84 +0.8
646,253 - MIT1002_00596 0.84 +0.8
646,263 + MIT1002_00596 0.86 +0.2
646,263 + MIT1002_00596 0.86 +1.4
646,271 - MIT1002_00596 0.88 -0.2
646,303 + -0.0
646,387 + -1.4
646,387 + +1.4
646,394 - -1.8
646,458 + -0.6
646,468 + +0.1
646,490 + -0.9
646,491 + -0.3
646,501 + +0.4
646,509 - -0.2
646,550 + -0.7
646,550 + +0.1
646,575 + +0.6
646,583 - +1.4
646,583 - -0.0
646,583 - -0.9
646,583 - +1.0
646,583 - -2.3
646,590 + +0.7
646,598 - +0.1
646,687 + +0.7
646,687 - +0.1
646,702 - +1.0
646,711 + -1.3
646,713 + +2.0
646,720 - +0.6
646,818 - MIT1002_00597 0.11 -0.8
646,819 - MIT1002_00597 0.11 -0.7
646,858 - MIT1002_00597 0.13 -0.1
646,918 + MIT1002_00597 0.17 +0.2
646,920 + MIT1002_00597 0.17 +0.1
646,958 + MIT1002_00597 0.20 +0.3
646,969 + MIT1002_00597 0.21 -1.3
647,009 + MIT1002_00597 0.23 -0.3
647,087 + MIT1002_00597 0.28 -0.8
647,161 - MIT1002_00597 0.33 +0.4
647,176 + MIT1002_00597 0.34 +0.3
647,261 + MIT1002_00597 0.39 -0.2
647,261 + MIT1002_00597 0.39 +0.4
647,261 + MIT1002_00597 0.39 -1.1
647,261 + MIT1002_00597 0.39 +0.6
647,261 + MIT1002_00597 0.39 +0.6
647,261 + MIT1002_00597 0.39 -0.7
647,261 + MIT1002_00597 0.39 +0.7
647,269 - MIT1002_00597 0.40 -1.1
647,269 - MIT1002_00597 0.40 -2.6
647,269 - MIT1002_00597 0.40 +0.9
647,269 - MIT1002_00597 0.40 +1.0
647,269 - MIT1002_00597 0.40 +0.2
647,279 - MIT1002_00597 0.41 -0.5
647,287 + MIT1002_00597 0.41 -0.5
647,304 + MIT1002_00597 0.42 -0.2

Or see this region's nucleotide sequence