Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00579

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00578 and MIT1002_00579 are separated by 111 nucleotidesMIT1002_00579 and MIT1002_00580 are separated by 769 nucleotides MIT1002_00578: MIT1002_00578 - ZIP Zinc transporter, at 625,122 to 625,838 _00578 MIT1002_00579: MIT1002_00579 - Octaprenyl-diphosphate synthase, at 625,950 to 626,930 _00579 MIT1002_00580: MIT1002_00580 - 50S ribosomal protein L21, at 627,700 to 628,011 _00580 Position (kb) 625 626 627Strain fitness (log2 ratio) -2 -1 0 1 2at 625.061 kb on + strandat 625.099 kb on - strandat 625.121 kb on - strandat 625.206 kb on + strand, within MIT1002_00578at 625.220 kb on + strand, within MIT1002_00578at 625.247 kb on - strand, within MIT1002_00578at 625.273 kb on - strand, within MIT1002_00578at 625.294 kb on + strand, within MIT1002_00578at 625.313 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.323 kb on - strand, within MIT1002_00578at 625.388 kb on - strand, within MIT1002_00578at 625.436 kb on + strand, within MIT1002_00578at 625.517 kb on - strand, within MIT1002_00578at 625.543 kb on + strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.552 kb on - strand, within MIT1002_00578at 625.588 kb on + strand, within MIT1002_00578at 625.596 kb on - strand, within MIT1002_00578at 625.625 kb on + strand, within MIT1002_00578at 625.633 kb on - strand, within MIT1002_00578at 625.636 kb on + strand, within MIT1002_00578at 625.675 kb on + strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.685 kb on - strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.690 kb on + strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.698 kb on - strand, within MIT1002_00578at 625.700 kb on - strand, within MIT1002_00578at 625.962 kb on - strandat 626.989 kb on + strandat 626.997 kb on - strandat 626.997 kb on - strandat 626.997 kb on - strandat 627.002 kb on - strandat 627.093 kb on - strandat 627.095 kb on - strandat 627.095 kb on - strandat 627.108 kb on - strandat 627.117 kb on + strandat 627.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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625,061 + +0.5
625,099 - -1.6
625,121 - +1.4
625,206 + MIT1002_00578 0.12 -1.9
625,220 + MIT1002_00578 0.14 -2.2
625,247 - MIT1002_00578 0.17 +0.1
625,273 - MIT1002_00578 0.21 -0.8
625,294 + MIT1002_00578 0.24 -0.0
625,313 - MIT1002_00578 0.27 -0.6
625,323 - MIT1002_00578 0.28 +0.7
625,323 - MIT1002_00578 0.28 +1.2
625,388 - MIT1002_00578 0.37 +0.1
625,436 + MIT1002_00578 0.44 +1.6
625,517 - MIT1002_00578 0.55 -0.5
625,543 + MIT1002_00578 0.59 -0.7
625,552 - MIT1002_00578 0.60 -1.2
625,552 - MIT1002_00578 0.60 -0.1
625,588 + MIT1002_00578 0.65 -0.4
625,596 - MIT1002_00578 0.66 -1.7
625,625 + MIT1002_00578 0.70 +1.7
625,633 - MIT1002_00578 0.71 -0.7
625,636 + MIT1002_00578 0.72 +0.6
625,675 + MIT1002_00578 0.77 +1.6
625,685 - MIT1002_00578 0.79 +2.0
625,685 - MIT1002_00578 0.79 -1.4
625,685 - MIT1002_00578 0.79 +1.1
625,690 + MIT1002_00578 0.79 -1.3
625,690 + MIT1002_00578 0.79 +0.2
625,690 + MIT1002_00578 0.79 -0.6
625,690 + MIT1002_00578 0.79 +1.0
625,690 + MIT1002_00578 0.79 -0.4
625,690 + MIT1002_00578 0.79 +0.1
625,698 - MIT1002_00578 0.80 +0.6
625,698 - MIT1002_00578 0.80 -0.9
625,698 - MIT1002_00578 0.80 +0.4
625,700 - MIT1002_00578 0.81 +1.3
625,962 - -0.6
626,989 + -0.1
626,997 - +0.1
626,997 - +0.2
626,997 - +0.4
627,002 - -0.2
627,093 - -0.6
627,095 - +0.0
627,095 - -0.8
627,108 - +0.0
627,117 + -0.2
627,246 - -0.8

Or see this region's nucleotide sequence