Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00541

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00540 and MIT1002_00541 are separated by 106 nucleotidesMIT1002_00541 and MIT1002_00542 are separated by 159 nucleotides MIT1002_00540: MIT1002_00540 - Beta-hexosaminidase A precursor, at 587,820 to 589,751 _00540 MIT1002_00541: MIT1002_00541 - Mechanosensitive ion channel, at 589,858 to 590,928 _00541 MIT1002_00542: MIT1002_00542 - hypothetical protein, at 591,088 to 592,590 _00542 Position (kb) 589 590 591Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 588.872 kb on + strand, within MIT1002_00540at 588.875 kb on - strand, within MIT1002_00540at 588.875 kb on - strand, within MIT1002_00540at 588.875 kb on - strand, within MIT1002_00540at 588.889 kb on - strand, within MIT1002_00540at 588.891 kb on + strand, within MIT1002_00540at 589.067 kb on + strand, within MIT1002_00540at 589.195 kb on - strand, within MIT1002_00540at 589.295 kb on - strand, within MIT1002_00540at 589.405 kb on + strand, within MIT1002_00540at 589.442 kb on + strand, within MIT1002_00540at 589.477 kb on + strand, within MIT1002_00540at 589.537 kb on - strand, within MIT1002_00540at 589.573 kb on - strandat 589.580 kb on - strandat 589.618 kb on + strandat 589.630 kb on + strandat 589.636 kb on - strandat 589.638 kb on - strandat 589.680 kb on - strandat 589.704 kb on - strandat 589.704 kb on - strandat 589.771 kb on + strandat 589.779 kb on - strandat 589.931 kb on - strandat 589.974 kb on + strand, within MIT1002_00541at 589.976 kb on + strand, within MIT1002_00541at 589.983 kb on + strand, within MIT1002_00541at 589.988 kb on + strand, within MIT1002_00541at 589.991 kb on - strand, within MIT1002_00541at 589.991 kb on - strand, within MIT1002_00541at 590.021 kb on - strand, within MIT1002_00541at 590.023 kb on + strand, within MIT1002_00541at 590.023 kb on + strand, within MIT1002_00541at 590.052 kb on - strand, within MIT1002_00541at 590.105 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.107 kb on - strand, within MIT1002_00541at 590.124 kb on + strand, within MIT1002_00541at 590.212 kb on - strand, within MIT1002_00541at 590.425 kb on + strand, within MIT1002_00541at 590.443 kb on - strand, within MIT1002_00541at 590.488 kb on - strand, within MIT1002_00541at 590.553 kb on - strand, within MIT1002_00541at 590.596 kb on + strand, within MIT1002_00541at 590.661 kb on + strand, within MIT1002_00541at 590.669 kb on - strand, within MIT1002_00541at 590.675 kb on + strand, within MIT1002_00541at 590.752 kb on + strand, within MIT1002_00541at 591.031 kb on + strandat 591.217 kb on - strandat 591.369 kb on - strand, within MIT1002_00542at 591.458 kb on - strand, within MIT1002_00542at 591.557 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.588 kb on + strand, within MIT1002_00542at 591.591 kb on - strand, within MIT1002_00542at 591.593 kb on + strand, within MIT1002_00542at 591.593 kb on + strand, within MIT1002_00542at 591.596 kb on - strand, within MIT1002_00542at 591.596 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.601 kb on - strand, within MIT1002_00542at 591.624 kb on + strand, within MIT1002_00542at 591.636 kb on + strand, within MIT1002_00542at 591.662 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.704 kb on - strand, within MIT1002_00542at 591.720 kb on + strand, within MIT1002_00542at 591.779 kb on - strand, within MIT1002_00542at 591.781 kb on - strand, within MIT1002_00542at 591.789 kb on - strand, within MIT1002_00542at 591.842 kb on - strand, within MIT1002_00542at 591.864 kb on + strand, within MIT1002_00542at 591.872 kb on - strand, within MIT1002_00542at 591.882 kb on - strand, within MIT1002_00542

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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588,872 + MIT1002_00540 0.54 -0.3
588,875 - MIT1002_00540 0.55 -0.4
588,875 - MIT1002_00540 0.55 +0.5
588,875 - MIT1002_00540 0.55 -1.5
588,889 - MIT1002_00540 0.55 +1.6
588,891 + MIT1002_00540 0.55 +0.2
589,067 + MIT1002_00540 0.65 +1.3
589,195 - MIT1002_00540 0.71 -1.4
589,295 - MIT1002_00540 0.76 -3.6
589,405 + MIT1002_00540 0.82 +0.2
589,442 + MIT1002_00540 0.84 +0.4
589,477 + MIT1002_00540 0.86 +0.0
589,537 - MIT1002_00540 0.89 +0.2
589,573 - +0.1
589,580 - -0.5
589,618 + +0.8
589,630 + -1.4
589,636 - -1.3
589,638 - +1.9
589,680 - -0.4
589,704 - -0.8
589,704 - +1.7
589,771 + -0.5
589,779 - -0.1
589,931 - +0.7
589,974 + MIT1002_00541 0.11 +1.0
589,976 + MIT1002_00541 0.11 -0.8
589,983 + MIT1002_00541 0.12 -1.1
589,988 + MIT1002_00541 0.12 +0.4
589,991 - MIT1002_00541 0.12 -0.5
589,991 - MIT1002_00541 0.12 -0.5
590,021 - MIT1002_00541 0.15 -0.3
590,023 + MIT1002_00541 0.15 -1.5
590,023 + MIT1002_00541 0.15 -0.0
590,052 - MIT1002_00541 0.18 +0.7
590,105 - MIT1002_00541 0.23 -2.6
590,107 - MIT1002_00541 0.23 -0.7
590,107 - MIT1002_00541 0.23 +0.2
590,107 - MIT1002_00541 0.23 +0.4
590,124 + MIT1002_00541 0.25 -1.2
590,212 - MIT1002_00541 0.33 +0.0
590,425 + MIT1002_00541 0.53 -0.3
590,443 - MIT1002_00541 0.55 -0.1
590,488 - MIT1002_00541 0.59 -0.6
590,553 - MIT1002_00541 0.65 +0.7
590,596 + MIT1002_00541 0.69 +0.5
590,661 + MIT1002_00541 0.75 -0.2
590,669 - MIT1002_00541 0.76 +0.2
590,675 + MIT1002_00541 0.76 +0.2
590,752 + MIT1002_00541 0.83 +0.0
591,031 + +1.2
591,217 - +0.2
591,369 - MIT1002_00542 0.19 +0.2
591,458 - MIT1002_00542 0.25 -0.6
591,557 + MIT1002_00542 0.31 +3.9
591,588 + MIT1002_00542 0.33 +0.2
591,588 + MIT1002_00542 0.33 +0.0
591,588 + MIT1002_00542 0.33 +0.5
591,591 - MIT1002_00542 0.33 -0.1
591,593 + MIT1002_00542 0.34 -0.3
591,593 + MIT1002_00542 0.34 -0.8
591,596 - MIT1002_00542 0.34 -0.3
591,596 - MIT1002_00542 0.34 -1.8
591,601 - MIT1002_00542 0.34 -0.1
591,601 - MIT1002_00542 0.34 +1.0
591,601 - MIT1002_00542 0.34 -0.5
591,624 + MIT1002_00542 0.36 -0.4
591,636 + MIT1002_00542 0.36 -1.7
591,662 - MIT1002_00542 0.38 -0.2
591,697 - MIT1002_00542 0.41 -0.2
591,697 - MIT1002_00542 0.41 -0.3
591,704 - MIT1002_00542 0.41 -0.1
591,720 + MIT1002_00542 0.42 +0.1
591,779 - MIT1002_00542 0.46 +0.8
591,781 - MIT1002_00542 0.46 -0.2
591,789 - MIT1002_00542 0.47 +1.1
591,842 - MIT1002_00542 0.50 +0.2
591,864 + MIT1002_00542 0.52 +1.3
591,872 - MIT1002_00542 0.52 +0.6
591,882 - MIT1002_00542 0.53 -0.2

Or see this region's nucleotide sequence