Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00517 and MIT1002_00518 are separated by 229 nucleotides MIT1002_00518 and MIT1002_00519 are separated by 22 nucleotides
MIT1002_00517: MIT1002_00517 - hypothetical protein, at 561,134 to 562,399
_00517
MIT1002_00518: MIT1002_00518 - putative hydrolase YxeP, at 562,629 to 563,927
_00518
MIT1002_00519: MIT1002_00519 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 563,950 to 566,766
_00519
Position (kb) 562
563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 562.374 kb on + strand at 562.579 kb on + strand at 562.597 kb on - strand at 562.597 kb on - strand at 562.662 kb on + strand at 562.662 kb on + strand at 562.662 kb on + strand at 562.697 kb on + strand at 562.705 kb on - strand at 562.705 kb on - strand at 562.724 kb on + strand at 562.742 kb on - strand at 562.805 kb on + strand, within MIT1002_00518 at 562.878 kb on + strand, within MIT1002_00518 at 562.895 kb on + strand, within MIT1002_00518 at 562.897 kb on - strand, within MIT1002_00518 at 562.947 kb on - strand, within MIT1002_00518 at 562.991 kb on - strand, within MIT1002_00518 at 563.013 kb on + strand, within MIT1002_00518 at 563.018 kb on + strand, within MIT1002_00518 at 563.025 kb on + strand, within MIT1002_00518 at 563.078 kb on + strand, within MIT1002_00518 at 563.122 kb on + strand, within MIT1002_00518 at 563.124 kb on + strand, within MIT1002_00518 at 563.132 kb on - strand, within MIT1002_00518 at 563.316 kb on + strand, within MIT1002_00518 at 563.337 kb on - strand, within MIT1002_00518 at 563.347 kb on + strand, within MIT1002_00518 at 563.388 kb on + strand, within MIT1002_00518 at 563.396 kb on - strand, within MIT1002_00518 at 563.397 kb on + strand, within MIT1002_00518 at 563.462 kb on - strand, within MIT1002_00518 at 563.522 kb on + strand, within MIT1002_00518 at 563.522 kb on + strand, within MIT1002_00518 at 563.530 kb on - strand, within MIT1002_00518 at 563.530 kb on - strand, within MIT1002_00518 at 563.560 kb on - strand, within MIT1002_00518 at 563.623 kb on - strand, within MIT1002_00518 at 563.650 kb on + strand, within MIT1002_00518 at 563.658 kb on - strand, within MIT1002_00518 at 563.658 kb on - strand, within MIT1002_00518 at 563.677 kb on + strand, within MIT1002_00518 at 563.685 kb on - strand, within MIT1002_00518 at 563.687 kb on - strand, within MIT1002_00518 at 563.734 kb on - strand, within MIT1002_00518 at 563.792 kb on + strand, within MIT1002_00518 at 563.807 kb on - strand at 563.819 kb on + strand at 563.819 kb on + strand at 563.827 kb on - strand at 563.829 kb on + strand at 563.865 kb on + strand at 563.910 kb on - strand at 563.924 kb on - strand at 563.924 kb on - strand at 564.006 kb on + strand at 564.006 kb on + strand at 564.014 kb on - strand at 564.014 kb on - strand at 564.049 kb on + strand at 564.050 kb on - strand at 564.086 kb on + strand at 564.094 kb on + strand at 564.165 kb on + strand at 564.166 kb on - strand at 564.190 kb on + strand at 564.200 kb on + strand at 564.205 kb on - strand at 564.205 kb on - strand at 564.281 kb on + strand, within MIT1002_00519 at 564.289 kb on - strand, within MIT1002_00519 at 564.432 kb on - strand, within MIT1002_00519 at 564.439 kb on - strand, within MIT1002_00519 at 564.439 kb on - strand, within MIT1002_00519 at 564.464 kb on + strand, within MIT1002_00519 at 564.607 kb on - strand, within MIT1002_00519 at 564.615 kb on + strand, within MIT1002_00519 at 564.667 kb on + strand, within MIT1002_00519 at 564.667 kb on + strand, within MIT1002_00519 at 564.673 kb on + strand, within MIT1002_00519 at 564.686 kb on - strand, within MIT1002_00519 at 564.809 kb on + strand, within MIT1002_00519 at 564.916 kb on + strand, within MIT1002_00519
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 562,374 + -1.8 562,579 + +0.7 562,597 - +1.3 562,597 - -0.1 562,662 + -0.9 562,662 + -0.3 562,662 + +1.9 562,697 + -1.0 562,705 - +0.4 562,705 - -0.0 562,724 + -0.0 562,742 - -0.9 562,805 + MIT1002_00518 0.14 +0.2 562,878 + MIT1002_00518 0.19 +1.2 562,895 + MIT1002_00518 0.20 +0.4 562,897 - MIT1002_00518 0.21 +1.2 562,947 - MIT1002_00518 0.24 +0.1 562,991 - MIT1002_00518 0.28 -1.2 563,013 + MIT1002_00518 0.30 -0.1 563,018 + MIT1002_00518 0.30 +0.6 563,025 + MIT1002_00518 0.30 -1.8 563,078 + MIT1002_00518 0.35 +0.4 563,122 + MIT1002_00518 0.38 -1.6 563,124 + MIT1002_00518 0.38 -0.7 563,132 - MIT1002_00518 0.39 +0.1 563,316 + MIT1002_00518 0.53 +1.0 563,337 - MIT1002_00518 0.55 -0.1 563,347 + MIT1002_00518 0.55 +1.0 563,388 + MIT1002_00518 0.58 +0.6 563,396 - MIT1002_00518 0.59 +1.0 563,397 + MIT1002_00518 0.59 -0.2 563,462 - MIT1002_00518 0.64 +0.1 563,522 + MIT1002_00518 0.69 +1.6 563,522 + MIT1002_00518 0.69 +0.0 563,530 - MIT1002_00518 0.69 +0.8 563,530 - MIT1002_00518 0.69 -2.8 563,560 - MIT1002_00518 0.72 +0.8 563,623 - MIT1002_00518 0.77 +0.1 563,650 + MIT1002_00518 0.79 -1.2 563,658 - MIT1002_00518 0.79 +1.8 563,658 - MIT1002_00518 0.79 +0.6 563,677 + MIT1002_00518 0.81 -0.7 563,685 - MIT1002_00518 0.81 -0.4 563,687 - MIT1002_00518 0.81 -0.6 563,734 - MIT1002_00518 0.85 -0.5 563,792 + MIT1002_00518 0.90 -0.0 563,807 - -0.3 563,819 + +0.1 563,819 + +0.4 563,827 - -0.9 563,829 + +0.6 563,865 + -0.7 563,910 - +1.5 563,924 - -1.8 563,924 - +0.5 564,006 + +0.6 564,006 + -1.4 564,014 - -2.3 564,014 - +0.0 564,049 + +0.3 564,050 - +0.2 564,086 + -0.2 564,094 + +0.2 564,165 + +0.2 564,166 - -0.3 564,190 + +0.6 564,200 + -0.2 564,205 - -2.3 564,205 - +1.9 564,281 + MIT1002_00519 0.12 -1.1 564,289 - MIT1002_00519 0.12 -0.6 564,432 - MIT1002_00519 0.17 +0.1 564,439 - MIT1002_00519 0.17 -3.3 564,439 - MIT1002_00519 0.17 -0.8 564,464 + MIT1002_00519 0.18 -0.9 564,607 - MIT1002_00519 0.23 +0.1 564,615 + MIT1002_00519 0.24 -0.1 564,667 + MIT1002_00519 0.25 +0.1 564,667 + MIT1002_00519 0.25 +1.2 564,673 + MIT1002_00519 0.26 -2.5 564,686 - MIT1002_00519 0.26 -0.9 564,809 + MIT1002_00519 0.30 -0.9 564,916 + MIT1002_00519 0.34 +1.0
Or see this region's nucleotide sequence