Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00379 and MIT1002_00380 are separated by 488 nucleotides MIT1002_00380 and MIT1002_00381 are separated by 61 nucleotides MIT1002_00381 and MIT1002_00382 are separated by 109 nucleotides
MIT1002_00379: MIT1002_00379 - hypothetical protein, at 409,465 to 409,926
_00379
MIT1002_00380: MIT1002_00380 - Aconitate hydratase 1, at 410,415 to 413,132
_00380
MIT1002_00381: MIT1002_00381 - hypothetical protein, at 413,194 to 413,688
_00381
MIT1002_00382: MIT1002_00382 - Type II traffic warden ATPase, at 413,798 to 416,056
_00382
Position (kb) 410
411
412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 409.428 kb on + strand at 409.436 kb on - strand at 409.482 kb on + strand at 409.491 kb on - strand at 409.542 kb on - strand, within MIT1002_00379 at 409.571 kb on - strand, within MIT1002_00379 at 409.573 kb on + strand, within MIT1002_00379 at 409.581 kb on - strand, within MIT1002_00379 at 409.598 kb on - strand, within MIT1002_00379 at 409.648 kb on + strand, within MIT1002_00379 at 409.670 kb on + strand, within MIT1002_00379 at 409.726 kb on + strand, within MIT1002_00379 at 409.760 kb on + strand, within MIT1002_00379 at 409.765 kb on + strand, within MIT1002_00379 at 409.890 kb on + strand at 409.895 kb on + strand at 409.903 kb on + strand at 409.903 kb on - strand at 409.917 kb on + strand at 409.964 kb on - strand at 409.964 kb on - strand at 409.981 kb on - strand at 409.981 kb on - strand at 410.029 kb on - strand at 410.097 kb on + strand at 410.105 kb on - strand at 410.137 kb on + strand at 410.154 kb on - strand at 410.228 kb on + strand at 410.271 kb on + strand at 410.407 kb on - strand at 410.467 kb on - strand at 410.476 kb on - strand at 410.567 kb on - strand at 410.567 kb on - strand at 410.576 kb on - strand at 410.595 kb on + strand at 410.603 kb on + strand at 410.644 kb on - strand at 410.703 kb on + strand, within MIT1002_00380 at 410.933 kb on - strand, within MIT1002_00380 at 410.950 kb on + strand, within MIT1002_00380 at 410.993 kb on - strand, within MIT1002_00380 at 411.023 kb on + strand, within MIT1002_00380 at 411.066 kb on - strand, within MIT1002_00380 at 411.068 kb on + strand, within MIT1002_00380 at 411.081 kb on - strand, within MIT1002_00380 at 411.214 kb on + strand, within MIT1002_00380 at 411.216 kb on + strand, within MIT1002_00380 at 411.487 kb on + strand, within MIT1002_00380 at 411.548 kb on - strand, within MIT1002_00380 at 411.568 kb on - strand, within MIT1002_00380 at 411.659 kb on - strand, within MIT1002_00380 at 411.661 kb on + strand, within MIT1002_00380 at 411.701 kb on + strand, within MIT1002_00380 at 411.709 kb on - strand, within MIT1002_00380 at 411.729 kb on - strand, within MIT1002_00380 at 411.763 kb on + strand, within MIT1002_00380 at 411.801 kb on + strand, within MIT1002_00380 at 411.838 kb on + strand, within MIT1002_00380 at 411.838 kb on + strand, within MIT1002_00380 at 411.846 kb on - strand, within MIT1002_00380 at 411.846 kb on - strand, within MIT1002_00380 at 411.846 kb on - strand, within MIT1002_00380 at 411.877 kb on + strand, within MIT1002_00380 at 411.889 kb on - strand, within MIT1002_00380 at 411.930 kb on + strand, within MIT1002_00380 at 411.937 kb on + strand, within MIT1002_00380 at 411.937 kb on + strand, within MIT1002_00380 at 411.938 kb on - strand, within MIT1002_00380 at 411.980 kb on + strand, within MIT1002_00380 at 412.080 kb on - strand, within MIT1002_00380 at 412.128 kb on + strand, within MIT1002_00380 at 412.133 kb on + strand, within MIT1002_00380 at 412.170 kb on - strand, within MIT1002_00380 at 412.173 kb on + strand, within MIT1002_00380 at 412.173 kb on + strand, within MIT1002_00380 at 412.187 kb on - strand, within MIT1002_00380 at 412.235 kb on - strand, within MIT1002_00380 at 412.242 kb on + strand, within MIT1002_00380 at 412.244 kb on + strand, within MIT1002_00380 at 412.280 kb on - strand, within MIT1002_00380 at 412.289 kb on - strand, within MIT1002_00380 at 412.350 kb on + strand, within MIT1002_00380 at 412.350 kb on + strand, within MIT1002_00380 at 412.350 kb on + strand, within MIT1002_00380 at 412.422 kb on + strand, within MIT1002_00380 at 412.551 kb on - strand, within MIT1002_00380 at 412.559 kb on - strand, within MIT1002_00380 at 412.573 kb on + strand, within MIT1002_00380 at 412.579 kb on - strand, within MIT1002_00380 at 412.600 kb on + strand, within MIT1002_00380 at 412.602 kb on + strand, within MIT1002_00380 at 412.602 kb on + strand, within MIT1002_00380 at 412.603 kb on - strand, within MIT1002_00380 at 412.610 kb on - strand, within MIT1002_00380 at 412.610 kb on - strand, within MIT1002_00380 at 412.674 kb on + strand, within MIT1002_00380 at 412.674 kb on + strand, within MIT1002_00380 at 412.677 kb on - strand, within MIT1002_00380 at 412.682 kb on + strand, within MIT1002_00380 at 412.682 kb on - strand, within MIT1002_00380 at 412.690 kb on - strand, within MIT1002_00380 at 412.717 kb on + strand, within MIT1002_00380 at 412.717 kb on + strand, within MIT1002_00380 at 412.725 kb on - strand, within MIT1002_00380 at 412.777 kb on + strand, within MIT1002_00380 at 412.785 kb on - strand, within MIT1002_00380 at 412.785 kb on - strand, within MIT1002_00380 at 412.785 kb on - strand, within MIT1002_00380 at 412.803 kb on + strand, within MIT1002_00380 at 412.826 kb on + strand, within MIT1002_00380 at 412.834 kb on - strand, within MIT1002_00380 at 412.836 kb on + strand, within MIT1002_00380 at 412.836 kb on + strand, within MIT1002_00380 at 412.850 kb on - strand, within MIT1002_00380 at 412.867 kb on + strand at 412.867 kb on + strand at 412.867 kb on + strand at 412.867 kb on + strand at 412.875 kb on - strand at 412.875 kb on - strand at 412.875 kb on - strand at 412.875 kb on - strand at 412.877 kb on + strand at 412.880 kb on - strand at 412.909 kb on + strand at 412.977 kb on - strand at 413.059 kb on + strand at 413.150 kb on - strand at 413.150 kb on - strand at 413.150 kb on - strand at 413.150 kb on - strand at 413.150 kb on - strand at 413.150 kb on - strand at 413.274 kb on - strand, within MIT1002_00381 at 413.306 kb on + strand, within MIT1002_00381 at 413.306 kb on + strand, within MIT1002_00381 at 413.321 kb on + strand, within MIT1002_00381 at 413.346 kb on - strand, within MIT1002_00381 at 413.356 kb on - strand, within MIT1002_00381 at 413.411 kb on - strand, within MIT1002_00381 at 413.421 kb on - strand, within MIT1002_00381 at 413.421 kb on - strand, within MIT1002_00381 at 413.649 kb on - strand at 413.795 kb on + strand at 413.838 kb on - strand at 413.849 kb on - strand at 413.877 kb on - strand at 413.898 kb on + strand at 413.963 kb on + strand at 413.980 kb on + strand at 413.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 409,428 + +0.6 409,436 - +0.2 409,482 + -1.0 409,491 - +2.5 409,542 - MIT1002_00379 0.17 -0.3 409,571 - MIT1002_00379 0.23 +2.2 409,573 + MIT1002_00379 0.23 +1.0 409,581 - MIT1002_00379 0.25 -0.8 409,598 - MIT1002_00379 0.29 -0.4 409,648 + MIT1002_00379 0.40 -0.5 409,670 + MIT1002_00379 0.44 -0.5 409,726 + MIT1002_00379 0.56 -1.9 409,760 + MIT1002_00379 0.64 -0.3 409,765 + MIT1002_00379 0.65 -0.5 409,890 + +0.2 409,895 + +0.4 409,903 + +1.2 409,903 - -2.0 409,917 + -0.6 409,964 - +1.4 409,964 - -0.0 409,981 - +0.1 409,981 - +0.8 410,029 - -0.2 410,097 + -0.8 410,105 - -0.9 410,137 + +0.2 410,154 - +1.2 410,228 + -1.0 410,271 + -0.4 410,407 - +1.7 410,467 - -1.1 410,476 - +0.6 410,567 - +0.0 410,567 - +0.5 410,576 - -0.1 410,595 + +0.4 410,603 + -0.1 410,644 - +1.5 410,703 + MIT1002_00380 0.11 -0.3 410,933 - MIT1002_00380 0.19 +2.7 410,950 + MIT1002_00380 0.20 +0.6 410,993 - MIT1002_00380 0.21 +0.1 411,023 + MIT1002_00380 0.22 +1.2 411,066 - MIT1002_00380 0.24 +2.2 411,068 + MIT1002_00380 0.24 -1.2 411,081 - MIT1002_00380 0.25 -0.5 411,214 + MIT1002_00380 0.29 -0.4 411,216 + MIT1002_00380 0.29 +0.9 411,487 + MIT1002_00380 0.39 +1.6 411,548 - MIT1002_00380 0.42 +0.5 411,568 - MIT1002_00380 0.42 +0.1 411,659 - MIT1002_00380 0.46 +0.1 411,661 + MIT1002_00380 0.46 +0.2 411,701 + MIT1002_00380 0.47 +1.4 411,709 - MIT1002_00380 0.48 -1.7 411,729 - MIT1002_00380 0.48 -0.6 411,763 + MIT1002_00380 0.50 -2.9 411,801 + MIT1002_00380 0.51 +0.8 411,838 + MIT1002_00380 0.52 -2.7 411,838 + MIT1002_00380 0.52 -1.6 411,846 - MIT1002_00380 0.53 -0.4 411,846 - MIT1002_00380 0.53 -0.4 411,846 - MIT1002_00380 0.53 -0.2 411,877 + MIT1002_00380 0.54 -3.1 411,889 - MIT1002_00380 0.54 -1.2 411,930 + MIT1002_00380 0.56 +0.2 411,937 + MIT1002_00380 0.56 +0.6 411,937 + MIT1002_00380 0.56 -1.2 411,938 - MIT1002_00380 0.56 +0.4 411,980 + MIT1002_00380 0.58 -0.2 412,080 - MIT1002_00380 0.61 +1.0 412,128 + MIT1002_00380 0.63 +0.6 412,133 + MIT1002_00380 0.63 -1.4 412,170 - MIT1002_00380 0.65 +0.5 412,173 + MIT1002_00380 0.65 -0.5 412,173 + MIT1002_00380 0.65 +0.2 412,187 - MIT1002_00380 0.65 +0.1 412,235 - MIT1002_00380 0.67 +1.1 412,242 + MIT1002_00380 0.67 -0.4 412,244 + MIT1002_00380 0.67 -0.1 412,280 - MIT1002_00380 0.69 -0.5 412,289 - MIT1002_00380 0.69 -0.1 412,350 + MIT1002_00380 0.71 -1.7 412,350 + MIT1002_00380 0.71 +1.0 412,350 + MIT1002_00380 0.71 +0.7 412,422 + MIT1002_00380 0.74 +0.4 412,551 - MIT1002_00380 0.79 +0.6 412,559 - MIT1002_00380 0.79 -0.1 412,573 + MIT1002_00380 0.79 -0.1 412,579 - MIT1002_00380 0.80 +1.5 412,600 + MIT1002_00380 0.80 +0.9 412,602 + MIT1002_00380 0.80 -0.3 412,602 + MIT1002_00380 0.80 -0.1 412,603 - MIT1002_00380 0.81 +0.6 412,610 - MIT1002_00380 0.81 -2.3 412,610 - MIT1002_00380 0.81 +0.6 412,674 + MIT1002_00380 0.83 -1.9 412,674 + MIT1002_00380 0.83 -0.7 412,677 - MIT1002_00380 0.83 +0.5 412,682 + MIT1002_00380 0.83 +1.3 412,682 - MIT1002_00380 0.83 +0.0 412,690 - MIT1002_00380 0.84 +0.8 412,717 + MIT1002_00380 0.85 +1.4 412,717 + MIT1002_00380 0.85 -0.1 412,725 - MIT1002_00380 0.85 -1.2 412,777 + MIT1002_00380 0.87 -2.2 412,785 - MIT1002_00380 0.87 -0.4 412,785 - MIT1002_00380 0.87 +0.2 412,785 - MIT1002_00380 0.87 -0.9 412,803 + MIT1002_00380 0.88 +0.0 412,826 + MIT1002_00380 0.89 -0.6 412,834 - MIT1002_00380 0.89 +0.5 412,836 + MIT1002_00380 0.89 +1.2 412,836 + MIT1002_00380 0.89 -0.6 412,850 - MIT1002_00380 0.90 -0.3 412,867 + -1.0 412,867 + +2.2 412,867 + +0.2 412,867 + -0.5 412,875 - +0.5 412,875 - +0.5 412,875 - -0.1 412,875 - +1.5 412,877 + -1.6 412,880 - +0.0 412,909 + -0.4 412,977 - +1.1 413,059 + +0.2 413,150 - +0.4 413,150 - -0.9 413,150 - +1.1 413,150 - +0.1 413,150 - +0.4 413,150 - -0.5 413,274 - MIT1002_00381 0.16 -0.2 413,306 + MIT1002_00381 0.23 +1.0 413,306 + MIT1002_00381 0.23 +0.4 413,321 + MIT1002_00381 0.26 +0.3 413,346 - MIT1002_00381 0.31 -0.8 413,356 - MIT1002_00381 0.33 +2.1 413,411 - MIT1002_00381 0.44 +0.6 413,421 - MIT1002_00381 0.46 +0.5 413,421 - MIT1002_00381 0.46 +0.8 413,649 - +0.5 413,795 + -0.4 413,838 - +1.4 413,849 - -0.5 413,877 - -1.6 413,898 + +0.2 413,963 + +0.2 413,980 + +0.7 413,993 + -0.4
Or see this region's nucleotide sequence