Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00365

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00364 and MIT1002_00365 are separated by 36 nucleotidesMIT1002_00365 and MIT1002_00366 are separated by 26 nucleotides MIT1002_00364: MIT1002_00364 - Glucose--fructose oxidoreductase precursor, at 392,377 to 393,531 _00364 MIT1002_00365: MIT1002_00365 - Inosose dehydratase, at 393,568 to 394,635 _00365 MIT1002_00366: MIT1002_00366 - Putative nucleoside transporter YegT, at 394,662 to 395,879 _00366 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 392.680 kb on + strand, within MIT1002_00364at 392.710 kb on + strand, within MIT1002_00364at 392.710 kb on + strand, within MIT1002_00364at 392.734 kb on - strand, within MIT1002_00364at 392.757 kb on - strand, within MIT1002_00364at 392.773 kb on + strand, within MIT1002_00364at 392.775 kb on - strand, within MIT1002_00364at 392.778 kb on + strand, within MIT1002_00364at 392.779 kb on + strand, within MIT1002_00364at 392.787 kb on - strand, within MIT1002_00364at 392.834 kb on + strand, within MIT1002_00364at 392.881 kb on + strand, within MIT1002_00364at 392.920 kb on + strand, within MIT1002_00364at 392.920 kb on + strand, within MIT1002_00364at 392.933 kb on - strand, within MIT1002_00364at 392.967 kb on + strand, within MIT1002_00364at 393.015 kb on - strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.020 kb on + strand, within MIT1002_00364at 393.028 kb on - strand, within MIT1002_00364at 393.039 kb on - strand, within MIT1002_00364at 393.054 kb on + strand, within MIT1002_00364at 393.081 kb on - strand, within MIT1002_00364at 393.086 kb on - strand, within MIT1002_00364at 393.091 kb on - strand, within MIT1002_00364at 393.138 kb on + strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.146 kb on - strand, within MIT1002_00364at 393.148 kb on + strand, within MIT1002_00364at 393.184 kb on + strand, within MIT1002_00364at 393.201 kb on - strand, within MIT1002_00364at 393.222 kb on - strand, within MIT1002_00364at 393.236 kb on + strand, within MIT1002_00364at 393.241 kb on + strand, within MIT1002_00364at 393.249 kb on - strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.261 kb on + strand, within MIT1002_00364at 393.269 kb on - strand, within MIT1002_00364at 393.269 kb on - strand, within MIT1002_00364at 393.284 kb on - strand, within MIT1002_00364at 393.291 kb on + strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.294 kb on - strand, within MIT1002_00364at 393.314 kb on + strand, within MIT1002_00364at 393.314 kb on + strand, within MIT1002_00364at 393.339 kb on + strand, within MIT1002_00364at 393.412 kb on + strand, within MIT1002_00364at 393.613 kb on + strandat 393.626 kb on - strandat 393.676 kb on - strand, within MIT1002_00365at 393.683 kb on + strand, within MIT1002_00365at 393.712 kb on - strand, within MIT1002_00365at 393.718 kb on - strand, within MIT1002_00365at 393.827 kb on - strand, within MIT1002_00365at 393.840 kb on + strand, within MIT1002_00365at 393.880 kb on - strand, within MIT1002_00365at 393.886 kb on + strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.894 kb on - strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.933 kb on + strand, within MIT1002_00365at 393.941 kb on - strand, within MIT1002_00365at 394.014 kb on + strand, within MIT1002_00365at 394.150 kb on + strand, within MIT1002_00365at 394.153 kb on - strand, within MIT1002_00365at 394.158 kb on - strand, within MIT1002_00365at 394.189 kb on + strand, within MIT1002_00365at 394.259 kb on + strand, within MIT1002_00365at 394.299 kb on + strand, within MIT1002_00365at 394.424 kb on - strand, within MIT1002_00365at 394.436 kb on + strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.444 kb on - strand, within MIT1002_00365at 394.449 kb on - strand, within MIT1002_00365at 394.458 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.468 kb on + strand, within MIT1002_00365at 394.472 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.476 kb on - strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.487 kb on + strand, within MIT1002_00365at 394.495 kb on - strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.508 kb on + strand, within MIT1002_00365at 394.516 kb on - strand, within MIT1002_00365at 394.559 kb on + strandat 394.590 kb on - strandat 394.590 kb on - strandat 394.596 kb on - strandat 394.668 kb on + strandat 394.669 kb on + strandat 394.669 kb on + strandat 394.669 kb on + strandat 394.698 kb on - strandat 394.784 kb on + strand, within MIT1002_00366at 394.785 kb on - strand, within MIT1002_00366at 394.794 kb on + strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.802 kb on - strand, within MIT1002_00366at 394.830 kb on - strand, within MIT1002_00366at 394.891 kb on - strand, within MIT1002_00366at 394.910 kb on - strand, within MIT1002_00366at 394.915 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.920 kb on - strand, within MIT1002_00366at 394.939 kb on + strand, within MIT1002_00366at 394.994 kb on + strand, within MIT1002_00366at 394.999 kb on + strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.002 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.007 kb on - strand, within MIT1002_00366at 395.029 kb on + strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.037 kb on - strand, within MIT1002_00366at 395.094 kb on - strand, within MIT1002_00366at 395.126 kb on + strand, within MIT1002_00366at 395.165 kb on + strand, within MIT1002_00366at 395.170 kb on + strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.178 kb on - strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.200 kb on + strand, within MIT1002_00366at 395.210 kb on + strand, within MIT1002_00366at 395.275 kb on + strand, within MIT1002_00366at 395.328 kb on - strand, within MIT1002_00366at 395.495 kb on + strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.503 kb on - strand, within MIT1002_00366at 395.559 kb on + strand, within MIT1002_00366at 395.604 kb on - strand, within MIT1002_00366

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
remove
392,680 + MIT1002_00364 0.26 -0.2
392,710 + MIT1002_00364 0.29 -0.0
392,710 + MIT1002_00364 0.29 -1.8
392,734 - MIT1002_00364 0.31 +0.0
392,757 - MIT1002_00364 0.33 +0.9
392,773 + MIT1002_00364 0.34 +1.1
392,775 - MIT1002_00364 0.34 -0.4
392,778 + MIT1002_00364 0.35 +1.1
392,779 + MIT1002_00364 0.35 -0.2
392,787 - MIT1002_00364 0.35 +0.7
392,834 + MIT1002_00364 0.40 +0.3
392,881 + MIT1002_00364 0.44 -0.5
392,920 + MIT1002_00364 0.47 -0.3
392,920 + MIT1002_00364 0.47 -1.0
392,933 - MIT1002_00364 0.48 -0.1
392,967 + MIT1002_00364 0.51 -0.9
393,015 - MIT1002_00364 0.55 +2.4
393,020 + MIT1002_00364 0.56 -0.9
393,020 + MIT1002_00364 0.56 +1.7
393,020 + MIT1002_00364 0.56 -1.2
393,028 - MIT1002_00364 0.56 -0.7
393,039 - MIT1002_00364 0.57 +0.6
393,054 + MIT1002_00364 0.59 -1.1
393,081 - MIT1002_00364 0.61 +2.0
393,086 - MIT1002_00364 0.61 +1.0
393,091 - MIT1002_00364 0.62 -0.1
393,138 + MIT1002_00364 0.66 +1.5
393,146 - MIT1002_00364 0.67 -0.6
393,146 - MIT1002_00364 0.67 +1.0
393,146 - MIT1002_00364 0.67 +1.5
393,148 + MIT1002_00364 0.67 -2.4
393,184 + MIT1002_00364 0.70 -2.0
393,201 - MIT1002_00364 0.71 -0.6
393,222 - MIT1002_00364 0.73 +0.1
393,236 + MIT1002_00364 0.74 -2.3
393,241 + MIT1002_00364 0.75 -1.1
393,249 - MIT1002_00364 0.75 +1.5
393,261 + MIT1002_00364 0.77 -0.0
393,261 + MIT1002_00364 0.77 +0.0
393,261 + MIT1002_00364 0.77 -1.3
393,261 + MIT1002_00364 0.77 -0.5
393,261 + MIT1002_00364 0.77 -0.2
393,261 + MIT1002_00364 0.77 -1.8
393,269 - MIT1002_00364 0.77 -0.5
393,269 - MIT1002_00364 0.77 -0.5
393,284 - MIT1002_00364 0.79 -0.3
393,291 + MIT1002_00364 0.79 -0.6
393,294 - MIT1002_00364 0.79 +0.1
393,294 - MIT1002_00364 0.79 +0.5
393,294 - MIT1002_00364 0.79 -0.5
393,314 + MIT1002_00364 0.81 -0.6
393,314 + MIT1002_00364 0.81 -0.6
393,339 + MIT1002_00364 0.83 -0.5
393,412 + MIT1002_00364 0.90 -0.2
393,613 + -1.1
393,626 - -0.6
393,676 - MIT1002_00365 0.10 -0.6
393,683 + MIT1002_00365 0.11 -0.4
393,712 - MIT1002_00365 0.13 +0.6
393,718 - MIT1002_00365 0.14 +0.8
393,827 - MIT1002_00365 0.24 +0.0
393,840 + MIT1002_00365 0.25 -1.0
393,880 - MIT1002_00365 0.29 -1.9
393,886 + MIT1002_00365 0.30 -1.6
393,894 - MIT1002_00365 0.31 -1.0
393,894 - MIT1002_00365 0.31 -0.1
393,933 + MIT1002_00365 0.34 +0.5
393,933 + MIT1002_00365 0.34 -0.7
393,941 - MIT1002_00365 0.35 -0.3
394,014 + MIT1002_00365 0.42 -2.4
394,150 + MIT1002_00365 0.54 +0.8
394,153 - MIT1002_00365 0.55 -0.5
394,158 - MIT1002_00365 0.55 -0.4
394,189 + MIT1002_00365 0.58 -1.1
394,259 + MIT1002_00365 0.65 -0.6
394,299 + MIT1002_00365 0.68 -0.4
394,424 - MIT1002_00365 0.80 +0.7
394,436 + MIT1002_00365 0.81 +0.4
394,444 - MIT1002_00365 0.82 -0.9
394,444 - MIT1002_00365 0.82 +1.2
394,449 - MIT1002_00365 0.82 +0.2
394,458 + MIT1002_00365 0.83 +0.0
394,468 + MIT1002_00365 0.84 -0.4
394,468 + MIT1002_00365 0.84 +0.4
394,468 + MIT1002_00365 0.84 -0.8
394,472 - MIT1002_00365 0.85 +0.3
394,476 - MIT1002_00365 0.85 +0.3
394,476 - MIT1002_00365 0.85 -2.0
394,476 - MIT1002_00365 0.85 +0.4
394,476 - MIT1002_00365 0.85 +0.0
394,476 - MIT1002_00365 0.85 -0.2
394,476 - MIT1002_00365 0.85 -0.2
394,476 - MIT1002_00365 0.85 +0.9
394,487 + MIT1002_00365 0.86 -1.7
394,487 + MIT1002_00365 0.86 -0.9
394,495 - MIT1002_00365 0.87 -1.4
394,508 + MIT1002_00365 0.88 -1.2
394,508 + MIT1002_00365 0.88 -1.3
394,508 + MIT1002_00365 0.88 -0.2
394,508 + MIT1002_00365 0.88 -1.5
394,508 + MIT1002_00365 0.88 -1.4
394,508 + MIT1002_00365 0.88 -0.9
394,508 + MIT1002_00365 0.88 -1.5
394,508 + MIT1002_00365 0.88 -1.1
394,516 - MIT1002_00365 0.89 +0.5
394,559 + -0.9
394,590 - -0.8
394,590 - +1.4
394,596 - +0.5
394,668 + -2.6
394,669 + +0.9
394,669 + +0.4
394,669 + -0.0
394,698 - +0.1
394,784 + MIT1002_00366 0.10 -0.8
394,785 - MIT1002_00366 0.10 +0.3
394,794 + MIT1002_00366 0.11 +0.9
394,802 - MIT1002_00366 0.11 +0.1
394,802 - MIT1002_00366 0.11 -0.7
394,802 - MIT1002_00366 0.11 -0.2
394,830 - MIT1002_00366 0.14 +0.8
394,891 - MIT1002_00366 0.19 +0.1
394,910 - MIT1002_00366 0.20 +0.6
394,915 - MIT1002_00366 0.21 +0.0
394,920 - MIT1002_00366 0.21 +0.3
394,920 - MIT1002_00366 0.21 -1.1
394,939 + MIT1002_00366 0.23 -1.0
394,994 + MIT1002_00366 0.27 -0.2
394,999 + MIT1002_00366 0.28 +0.5
395,002 - MIT1002_00366 0.28 +0.3
395,002 - MIT1002_00366 0.28 -1.6
395,007 - MIT1002_00366 0.28 +0.9
395,007 - MIT1002_00366 0.28 -0.2
395,029 + MIT1002_00366 0.30 -2.1
395,037 - MIT1002_00366 0.31 -0.2
395,037 - MIT1002_00366 0.31 -0.6
395,094 - MIT1002_00366 0.35 +0.2
395,126 + MIT1002_00366 0.38 -0.5
395,165 + MIT1002_00366 0.41 +0.5
395,170 + MIT1002_00366 0.42 +0.8
395,178 - MIT1002_00366 0.42 -0.4
395,178 - MIT1002_00366 0.42 -0.1
395,200 + MIT1002_00366 0.44 +0.7
395,200 + MIT1002_00366 0.44 +0.5
395,210 + MIT1002_00366 0.45 +0.2
395,275 + MIT1002_00366 0.50 +1.8
395,328 - MIT1002_00366 0.55 +1.1
395,495 + MIT1002_00366 0.68 +1.7
395,503 - MIT1002_00366 0.69 -0.4
395,503 - MIT1002_00366 0.69 -0.1
395,503 - MIT1002_00366 0.69 -2.6
395,559 + MIT1002_00366 0.74 -0.3
395,604 - MIT1002_00366 0.77 +3.7

Or see this region's nucleotide sequence