Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00242 and MIT1002_00243 are separated by 233 nucleotides MIT1002_00243 and MIT1002_00244 are separated by 177 nucleotides MIT1002_00244 and MIT1002_00245 are separated by 114 nucleotides MIT1002_00245 and MIT1002_00246 are separated by 599 nucleotides
MIT1002_00242: MIT1002_00242 - hypothetical protein, at 270,960 to 271,172
_00242
MIT1002_00243: MIT1002_00243 - Protein of unknown function, DUF, at 271,406 to 271,897
_00243
MIT1002_00244: MIT1002_00244 - Methionyl-tRNA formyltransferase, at 272,075 to 272,911
_00244
MIT1002_00245: MIT1002_00245 - hypothetical protein, at 273,026 to 273,247
_00245
MIT1002_00246: MIT1002_00246 - Sensor kinase CusS, at 273,847 to 275,253
_00246
Position (kb) 272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.097 kb on - strand, within MIT1002_00242 at 271.296 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.306 kb on + strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.314 kb on - strand at 271.371 kb on - strand at 271.434 kb on + strand at 271.556 kb on - strand, within MIT1002_00243 at 271.580 kb on - strand, within MIT1002_00243 at 271.592 kb on - strand, within MIT1002_00243 at 271.641 kb on + strand, within MIT1002_00243 at 271.699 kb on - strand, within MIT1002_00243 at 271.738 kb on + strand, within MIT1002_00243 at 271.849 kb on + strand at 271.983 kb on - strand at 272.018 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.028 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.030 kb on + strand at 272.043 kb on + strand at 272.060 kb on - strand at 272.060 kb on - strand at 272.060 kb on - strand at 272.070 kb on - strand at 272.071 kb on - strand at 272.261 kb on - strand, within MIT1002_00244 at 272.273 kb on + strand, within MIT1002_00244 at 272.293 kb on - strand, within MIT1002_00244 at 272.307 kb on + strand, within MIT1002_00244 at 272.371 kb on + strand, within MIT1002_00244 at 272.679 kb on + strand, within MIT1002_00244 at 272.937 kb on + strand at 273.063 kb on + strand, within MIT1002_00245 at 273.082 kb on + strand, within MIT1002_00245 at 273.129 kb on + strand, within MIT1002_00245 at 273.129 kb on + strand, within MIT1002_00245 at 273.129 kb on + strand, within MIT1002_00245 at 273.173 kb on + strand, within MIT1002_00245 at 273.225 kb on + strand at 273.233 kb on - strand at 273.233 kb on - strand at 273.233 kb on - strand at 273.274 kb on - strand at 273.274 kb on - strand at 273.276 kb on - strand at 273.281 kb on - strand at 273.281 kb on - strand at 273.442 kb on + strand at 273.444 kb on - strand at 273.493 kb on + strand at 273.498 kb on + strand at 273.503 kb on + strand at 273.506 kb on - strand at 273.556 kb on - strand at 273.643 kb on - strand at 273.658 kb on + strand at 273.658 kb on - strand at 273.691 kb on + strand at 273.693 kb on - strand at 273.693 kb on - strand at 273.715 kb on - strand at 273.766 kb on - strand at 273.818 kb on + strand at 273.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2 remove 271,097 - MIT1002_00242 0.64 -0.8 271,296 + +0.2 271,306 + -0.9 271,306 + +0.4 271,306 + -0.1 271,306 + -0.2 271,306 + +0.6 271,306 + -0.9 271,306 + +1.1 271,306 + -0.8 271,306 + -0.3 271,314 - -1.2 271,314 - +0.1 271,314 - -0.3 271,314 - +0.9 271,371 - -0.4 271,434 + +0.4 271,556 - MIT1002_00243 0.30 -1.2 271,580 - MIT1002_00243 0.35 -1.5 271,592 - MIT1002_00243 0.38 +0.5 271,641 + MIT1002_00243 0.48 -0.4 271,699 - MIT1002_00243 0.60 +0.5 271,738 + MIT1002_00243 0.67 +0.3 271,849 + -0.6 271,983 - +0.1 272,018 + +1.3 272,028 + +0.5 272,028 + -0.5 272,028 + -1.2 272,028 + +0.2 272,028 + -0.8 272,028 + +1.5 272,028 + -0.7 272,028 + -0.3 272,028 + -2.2 272,028 + +0.5 272,028 + +1.0 272,028 + -0.7 272,028 + -0.7 272,028 + -0.7 272,028 + +0.3 272,028 + +0.6 272,030 + -0.3 272,030 + -0.7 272,030 + -0.4 272,030 + +0.7 272,043 + -0.0 272,060 - -0.1 272,060 - +0.1 272,060 - -0.2 272,070 - +0.1 272,071 - -0.8 272,261 - MIT1002_00244 0.22 -0.1 272,273 + MIT1002_00244 0.24 +0.8 272,293 - MIT1002_00244 0.26 -1.7 272,307 + MIT1002_00244 0.28 -0.2 272,371 + MIT1002_00244 0.35 -0.3 272,679 + MIT1002_00244 0.72 -0.9 272,937 + +0.4 273,063 + MIT1002_00245 0.17 -1.4 273,082 + MIT1002_00245 0.25 -0.3 273,129 + MIT1002_00245 0.46 -1.5 273,129 + MIT1002_00245 0.46 +0.5 273,129 + MIT1002_00245 0.46 -1.7 273,173 + MIT1002_00245 0.66 +1.2 273,225 + +1.0 273,233 - -3.3 273,233 - +1.2 273,233 - +1.3 273,274 - +1.8 273,274 - +1.3 273,276 - -0.2 273,281 - -1.0 273,281 - +0.8 273,442 + +0.0 273,444 - +1.0 273,493 + -0.1 273,498 + +0.7 273,503 + -0.4 273,506 - -0.5 273,556 - +0.3 273,643 - +0.2 273,658 + +0.8 273,658 - -0.6 273,691 + +0.2 273,693 - -0.9 273,693 - +0.3 273,715 - -0.2 273,766 - -0.3 273,818 + -0.6 273,888 - +2.1
Or see this region's nucleotide sequence