Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00188

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00187 and MIT1002_00188 are separated by 172 nucleotidesMIT1002_00188 and MIT1002_00189 overlap by 8 nucleotides MIT1002_00187: MIT1002_00187 - Aldose 1-epimerase precursor, at 203,457 to 204,476 _00187 MIT1002_00188: MIT1002_00188 - Galactose-1-phosphate uridylyltransferase, at 204,649 to 205,704 _00188 MIT1002_00189: MIT1002_00189 - Galactokinase, at 205,697 to 206,836 _00189 Position (kb) 204 205 206Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 203.689 kb on - strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.720 kb on + strand, within MIT1002_00187at 203.725 kb on + strand, within MIT1002_00187at 203.728 kb on - strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.730 kb on + strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.738 kb on - strand, within MIT1002_00187at 203.771 kb on - strand, within MIT1002_00187at 203.798 kb on + strand, within MIT1002_00187at 203.806 kb on - strand, within MIT1002_00187at 203.827 kb on - strand, within MIT1002_00187at 203.858 kb on - strand, within MIT1002_00187at 203.868 kb on - strand, within MIT1002_00187at 203.871 kb on + strand, within MIT1002_00187at 203.980 kb on + strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.034 kb on - strand, within MIT1002_00187at 204.165 kb on - strand, within MIT1002_00187at 204.195 kb on + strand, within MIT1002_00187at 204.202 kb on - strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.214 kb on + strand, within MIT1002_00187at 204.220 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.222 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.240 kb on - strand, within MIT1002_00187at 204.244 kb on + strand, within MIT1002_00187at 204.272 kb on - strand, within MIT1002_00187at 204.310 kb on - strand, within MIT1002_00187at 204.325 kb on - strand, within MIT1002_00187at 204.350 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.357 kb on + strand, within MIT1002_00187at 204.358 kb on - strand, within MIT1002_00187at 204.627 kb on + strandat 204.639 kb on - strandat 204.659 kb on + strandat 204.666 kb on - strandat 204.698 kb on - strandat 204.698 kb on - strandat 204.715 kb on + strandat 204.715 kb on + strandat 204.723 kb on - strandat 204.843 kb on + strand, within MIT1002_00188at 204.843 kb on + strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.851 kb on - strand, within MIT1002_00188at 204.893 kb on + strand, within MIT1002_00188at 204.901 kb on - strand, within MIT1002_00188at 204.918 kb on - strand, within MIT1002_00188at 204.965 kb on - strand, within MIT1002_00188at 205.061 kb on + strand, within MIT1002_00188at 205.096 kb on - strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.127 kb on + strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.135 kb on - strand, within MIT1002_00188at 205.203 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on + strand, within MIT1002_00188at 205.240 kb on - strand, within MIT1002_00188at 205.245 kb on + strand, within MIT1002_00188at 205.305 kb on + strand, within MIT1002_00188at 205.323 kb on - strand, within MIT1002_00188at 205.356 kb on - strand, within MIT1002_00188at 205.500 kb on + strand, within MIT1002_00188at 205.555 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.565 kb on + strand, within MIT1002_00188at 205.573 kb on - strand, within MIT1002_00188at 205.580 kb on + strand, within MIT1002_00188at 205.581 kb on + strand, within MIT1002_00188at 205.629 kb on - strandat 205.629 kb on - strandat 205.845 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.874 kb on + strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.882 kb on - strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.955 kb on + strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 205.963 kb on - strand, within MIT1002_00189at 206.038 kb on - strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.061 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.066 kb on + strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.069 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.074 kb on - strand, within MIT1002_00189at 206.093 kb on - strand, within MIT1002_00189at 206.157 kb on - strand, within MIT1002_00189at 206.252 kb on - strand, within MIT1002_00189at 206.346 kb on - strand, within MIT1002_00189at 206.362 kb on - strand, within MIT1002_00189at 206.384 kb on - strand, within MIT1002_00189at 206.395 kb on + strand, within MIT1002_00189at 206.403 kb on - strand, within MIT1002_00189at 206.446 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.506 kb on + strand, within MIT1002_00189at 206.540 kb on - strand, within MIT1002_00189at 206.557 kb on + strand, within MIT1002_00189at 206.579 kb on + strand, within MIT1002_00189

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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203,689 - MIT1002_00187 0.23 -0.2
203,720 + MIT1002_00187 0.26 -0.2
203,720 + MIT1002_00187 0.26 +0.0
203,725 + MIT1002_00187 0.26 +0.3
203,728 - MIT1002_00187 0.27 -1.3
203,730 + MIT1002_00187 0.27 -1.4
203,730 + MIT1002_00187 0.27 -1.5
203,730 + MIT1002_00187 0.27 +0.0
203,738 - MIT1002_00187 0.28 +2.5
203,738 - MIT1002_00187 0.28 -0.2
203,738 - MIT1002_00187 0.28 -3.0
203,738 - MIT1002_00187 0.28 -0.1
203,771 - MIT1002_00187 0.31 +0.1
203,798 + MIT1002_00187 0.33 +0.4
203,806 - MIT1002_00187 0.34 -1.5
203,827 - MIT1002_00187 0.36 -0.8
203,858 - MIT1002_00187 0.39 -1.3
203,868 - MIT1002_00187 0.40 +1.2
203,871 + MIT1002_00187 0.41 -2.3
203,980 + MIT1002_00187 0.51 -0.0
204,034 - MIT1002_00187 0.57 +0.0
204,034 - MIT1002_00187 0.57 +1.2
204,165 - MIT1002_00187 0.69 -0.4
204,195 + MIT1002_00187 0.72 -2.8
204,202 - MIT1002_00187 0.73 +1.4
204,214 + MIT1002_00187 0.74 +0.4
204,214 + MIT1002_00187 0.74 +1.1
204,214 + MIT1002_00187 0.74 +1.0
204,214 + MIT1002_00187 0.74 -0.7
204,220 - MIT1002_00187 0.75 -0.7
204,222 - MIT1002_00187 0.75 -0.9
204,222 - MIT1002_00187 0.75 -0.2
204,222 - MIT1002_00187 0.75 -0.2
204,222 - MIT1002_00187 0.75 +0.4
204,240 - MIT1002_00187 0.77 +0.3
204,240 - MIT1002_00187 0.77 -0.2
204,244 + MIT1002_00187 0.77 -1.4
204,272 - MIT1002_00187 0.80 -0.1
204,310 - MIT1002_00187 0.84 +0.4
204,325 - MIT1002_00187 0.85 -0.5
204,350 + MIT1002_00187 0.88 +0.9
204,357 + MIT1002_00187 0.88 +0.1
204,357 + MIT1002_00187 0.88 +0.5
204,358 - MIT1002_00187 0.88 +1.4
204,627 + +0.5
204,639 - +0.8
204,659 + -5.7
204,666 - -1.8
204,698 - -1.3
204,698 - -3.6
204,715 + -4.8
204,715 + -2.1
204,723 - -2.0
204,843 + MIT1002_00188 0.18 -3.6
204,843 + MIT1002_00188 0.18 -5.2
204,851 - MIT1002_00188 0.19 -1.3
204,851 - MIT1002_00188 0.19 -2.0
204,893 + MIT1002_00188 0.23 -3.9
204,901 - MIT1002_00188 0.24 -1.2
204,918 - MIT1002_00188 0.25 -2.5
204,965 - MIT1002_00188 0.30 -4.1
205,061 + MIT1002_00188 0.39 -4.9
205,096 - MIT1002_00188 0.42 -3.0
205,127 + MIT1002_00188 0.45 -3.9
205,127 + MIT1002_00188 0.45 -2.5
205,135 - MIT1002_00188 0.46 -2.2
205,135 - MIT1002_00188 0.46 -2.4
205,203 + MIT1002_00188 0.52 -1.4
205,240 + MIT1002_00188 0.56 -1.7
205,240 + MIT1002_00188 0.56 -2.6
205,240 - MIT1002_00188 0.56 -0.8
205,245 + MIT1002_00188 0.56 -3.5
205,305 + MIT1002_00188 0.62 -5.3
205,323 - MIT1002_00188 0.64 -1.2
205,356 - MIT1002_00188 0.67 -3.2
205,500 + MIT1002_00188 0.81 -3.6
205,555 + MIT1002_00188 0.86 -0.6
205,565 + MIT1002_00188 0.87 -1.3
205,565 + MIT1002_00188 0.87 -3.2
205,573 - MIT1002_00188 0.88 -3.1
205,580 + MIT1002_00188 0.88 +0.1
205,581 + MIT1002_00188 0.88 -1.9
205,629 - -3.1
205,629 - -5.0
205,845 + MIT1002_00189 0.13 -4.2
205,874 + MIT1002_00189 0.16 -2.2
205,874 + MIT1002_00189 0.16 -2.6
205,882 - MIT1002_00189 0.16 -3.7
205,882 - MIT1002_00189 0.16 -3.3
205,882 - MIT1002_00189 0.16 -2.2
205,882 - MIT1002_00189 0.16 +0.1
205,955 + MIT1002_00189 0.23 -3.5
205,955 + MIT1002_00189 0.23 -3.3
205,955 + MIT1002_00189 0.23 -3.0
205,955 + MIT1002_00189 0.23 -1.5
205,963 - MIT1002_00189 0.23 -2.6
205,963 - MIT1002_00189 0.23 -2.6
205,963 - MIT1002_00189 0.23 -2.9
206,038 - MIT1002_00189 0.30 -2.6
206,061 + MIT1002_00189 0.32 -1.1
206,061 + MIT1002_00189 0.32 -2.6
206,066 + MIT1002_00189 0.32 -4.2
206,066 + MIT1002_00189 0.32 -2.2
206,066 + MIT1002_00189 0.32 -4.6
206,069 - MIT1002_00189 0.33 -2.3
206,069 - MIT1002_00189 0.33 -2.9
206,074 - MIT1002_00189 0.33 -2.7
206,074 - MIT1002_00189 0.33 -3.0
206,093 - MIT1002_00189 0.35 -3.3
206,157 - MIT1002_00189 0.40 -2.5
206,252 - MIT1002_00189 0.49 -2.3
206,346 - MIT1002_00189 0.57 -0.9
206,362 - MIT1002_00189 0.58 -1.6
206,384 - MIT1002_00189 0.60 -2.9
206,395 + MIT1002_00189 0.61 -1.4
206,403 - MIT1002_00189 0.62 -1.8
206,446 + MIT1002_00189 0.66 -2.3
206,506 + MIT1002_00189 0.71 -1.7
206,506 + MIT1002_00189 0.71 -3.8
206,540 - MIT1002_00189 0.74 -4.1
206,557 + MIT1002_00189 0.75 -3.4
206,579 + MIT1002_00189 0.77 -1.8

Or see this region's nucleotide sequence