Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00032

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00031 and MIT1002_00032 are separated by 373 nucleotidesMIT1002_00032 and MIT1002_00033 are separated by 280 nucleotides MIT1002_00031: MIT1002_00031 - UDP-N-acetylglucosamine 2-epimerase, at 33,008 to 34,048 _00031 MIT1002_00032: MIT1002_00032 - 16S ribosomal RNA, at 34,422 to 35,942 _00032 MIT1002_00033: MIT1002_00033 - 23S ribosomal RNA, at 36,223 to 39,099 _00033 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.426 kb on + strand, within MIT1002_00031at 33.430 kb on - strand, within MIT1002_00031at 33.434 kb on - strand, within MIT1002_00031at 33.509 kb on + strand, within MIT1002_00031at 33.509 kb on + strand, within MIT1002_00031at 33.517 kb on - strand, within MIT1002_00031at 33.530 kb on - strand, within MIT1002_00031at 33.616 kb on + strand, within MIT1002_00031at 33.622 kb on - strand, within MIT1002_00031at 33.622 kb on - strand, within MIT1002_00031at 33.704 kb on + strand, within MIT1002_00031at 33.904 kb on + strand, within MIT1002_00031at 33.955 kb on + strandat 33.955 kb on + strandat 33.967 kb on + strandat 34.017 kb on + strandat 34.061 kb on - strandat 35.518 kb on + strand, within MIT1002_00032at 35.518 kb on + strand, within MIT1002_00032at 35.537 kb on + strand, within MIT1002_00032at 36.740 kb on + strand, within MIT1002_00033

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 2
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33,426 + MIT1002_00031 0.40 -3.1
33,430 - MIT1002_00031 0.41 +2.0
33,434 - MIT1002_00031 0.41 -1.9
33,509 + MIT1002_00031 0.48 +0.2
33,509 + MIT1002_00031 0.48 -1.7
33,517 - MIT1002_00031 0.49 -1.6
33,530 - MIT1002_00031 0.50 -1.9
33,616 + MIT1002_00031 0.58 +0.7
33,622 - MIT1002_00031 0.59 -0.6
33,622 - MIT1002_00031 0.59 -0.2
33,704 + MIT1002_00031 0.67 -1.9
33,904 + MIT1002_00031 0.86 +0.8
33,955 + -0.5
33,955 + -0.9
33,967 + +0.4
34,017 + -0.9
34,061 - +1.9
35,518 + MIT1002_00032 0.72 +0.8
35,518 + MIT1002_00032 0.72 -1.3
35,537 + MIT1002_00032 0.73 -2.4
36,740 + MIT1002_00033 0.18 -1.3

Or see this region's nucleotide sequence