Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12180

Experiment: planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	planktonic; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,709,737	+		LRK53_RS12170	0.82	+0.2
2,709,737	+		LRK53_RS12170	0.82	-0.5
2,709,737	+		LRK53_RS12170	0.82	-0.3
2,709,793	+		LRK53_RS12170	0.89	+0.2
2,709,793	+		LRK53_RS12170	0.89	-0.4
2,709,793	+		LRK53_RS12170	0.89	+0.2
2,709,794	-		LRK53_RS12170	0.89	-0.0
2,709,794	-		LRK53_RS12170	0.89	-1.2
2,709,794	-		LRK53_RS12170	0.89	-1.1
2,709,811	+				-1.5
2,709,811	+				-0.4
2,709,811	+				-1.0
2,709,811	+				+1.1
2,709,812	-				-2.3
2,709,812	-				+1.0
2,709,812	-				-0.4
2,709,828	+				-1.4
2,709,828	+				+0.3
2,709,828	+				-0.3
2,709,828	+				+0.7
2,709,828	+				-0.3
2,709,828	+				-1.2
2,709,828	+				-0.8
2,709,828	+				-2.8
2,709,829	-				-0.6
2,709,829	-				-0.2
2,709,829	-				-0.9
2,709,829	-				+0.8
2,709,829	-				-1.7
2,709,829	-				-0.4
2,709,829	-				-1.7
2,709,829	-				-1.3
2,709,829	-				-0.9
2,709,829	-				+0.8
2,709,829	-				+1.2
2,709,829	-				-0.8
2,709,829	-				-0.5
2,709,873	+				-1.6
2,709,873	+				+1.2
2,709,873	+				-0.5
2,709,873	+				-0.3
2,709,873	+				-1.5
2,709,874	-				+0.2
2,709,874	-				-1.5
2,709,930	+				-0.9
2,710,000	+		LRK53_RS12175	0.13	-0.5
2,710,000	+		LRK53_RS12175	0.13	-0.0
2,710,039	-		LRK53_RS12175	0.18	-1.5
2,710,055	+		LRK53_RS12175	0.20	-0.5
2,710,055	+		LRK53_RS12175	0.20	+0.0
2,710,055	+		LRK53_RS12175	0.20	-0.4
2,710,056	-		LRK53_RS12175	0.20	-2.4
2,710,056	-		LRK53_RS12175	0.20	-0.7
2,710,056	-		LRK53_RS12175	0.20	+0.1
2,710,090	+		LRK53_RS12175	0.24	-0.1
2,710,091	-		LRK53_RS12175	0.24	-1.0
2,710,143	+		LRK53_RS12175	0.31	+0.9
2,710,143	+		LRK53_RS12175	0.31	-1.4
2,710,144	-		LRK53_RS12175	0.31	+1.5
2,710,144	-		LRK53_RS12175	0.31	-0.8
2,710,296	+		LRK53_RS12175	0.49	+1.0
2,710,296	+		LRK53_RS12175	0.49	-0.7
2,710,296	+		LRK53_RS12175	0.49	-0.4
2,710,296	+		LRK53_RS12175	0.49	+1.1
2,710,296	+		LRK53_RS12175	0.49	+0.5
2,710,297	-		LRK53_RS12175	0.49	-0.3
2,710,297	-		LRK53_RS12175	0.49	-1.1
2,710,297	-		LRK53_RS12175	0.49	-0.7
2,710,297	-		LRK53_RS12175	0.49	-0.7
2,710,297	-		LRK53_RS12175	0.49	-1.4
2,710,297	-		LRK53_RS12175	0.49	+0.2
2,710,312	+		LRK53_RS12175	0.51	-0.8
2,710,312	+		LRK53_RS12175	0.51	-2.6
2,710,312	+		LRK53_RS12175	0.51	-2.0
2,710,312	+		LRK53_RS12175	0.51	-1.3
2,710,313	-		LRK53_RS12175	0.51	-0.7
2,710,369	+		LRK53_RS12175	0.58	+1.5
2,710,369	+		LRK53_RS12175	0.58	-0.5
2,710,369	+		LRK53_RS12175	0.58	+0.6
2,710,370	-		LRK53_RS12175	0.58	+0.6
2,710,617	+		LRK53_RS12175	0.88	+0.5
2,710,617	+		LRK53_RS12175	0.88	+1.5
2,710,617	+		LRK53_RS12175	0.88	-0.7
2,710,618	-		LRK53_RS12175	0.88	-1.3
2,710,657	+				-1.4
2,710,658	-				-0.8
2,710,658	-				-1.6
2,710,658	-				-2.0
2,710,817	+		LRK53_RS12180	0.10	-0.4
2,710,817	+		LRK53_RS12180	0.10	-0.2
2,710,817	+		LRK53_RS12180	0.10	+0.4
2,710,817	+		LRK53_RS12180	0.10	-2.2
2,710,818	-		LRK53_RS12180	0.10	+0.5
2,710,818	-		LRK53_RS12180	0.10	-1.8
2,710,818	-		LRK53_RS12180	0.10	-2.1
2,710,818	-		LRK53_RS12180	0.10	-1.0
2,710,818	-		LRK53_RS12180	0.10	-1.2
2,710,839	+		LRK53_RS12180	0.12	-0.4
2,710,839	+		LRK53_RS12180	0.12	-1.9
2,710,839	+		LRK53_RS12180	0.12	-0.1
2,710,839	+		LRK53_RS12180	0.12	-0.2
2,710,840	-		LRK53_RS12180	0.13	-0.2
2,710,840	-		LRK53_RS12180	0.13	-0.1
2,710,840	-		LRK53_RS12180	0.13	+0.1
2,710,840	-		LRK53_RS12180	0.13	-0.6
2,710,840	-		LRK53_RS12180	0.13	-0.4
2,710,872	+		LRK53_RS12180	0.16	-0.3
2,710,872	+		LRK53_RS12180	0.16	-0.8
2,710,872	+		LRK53_RS12180	0.16	+0.0
2,710,873	-		LRK53_RS12180	0.16	-1.3
2,710,873	-		LRK53_RS12180	0.16	-0.6
2,710,911	+		LRK53_RS12180	0.20	-1.1
2,710,912	-		LRK53_RS12180	0.20	-0.2
2,710,926	+		LRK53_RS12180	0.21	+1.3
2,710,927	-		LRK53_RS12180	0.21	-0.2
2,710,927	-		LRK53_RS12180	0.21	-0.5
2,710,927	-		LRK53_RS12180	0.21	-0.5
2,710,927	-		LRK53_RS12180	0.21	-0.4
2,711,099	-		LRK53_RS12180	0.38	-0.8
2,711,223	+		LRK53_RS12180	0.51	-2.2
2,711,223	+		LRK53_RS12180	0.51	+0.4
2,711,224	-		LRK53_RS12180	0.51	+0.8
2,711,373	+		LRK53_RS12180	0.66	-0.9
2,711,373	+		LRK53_RS12180	0.66	-1.0
2,711,373	+		LRK53_RS12180	0.66	-2.6
2,711,373	+		LRK53_RS12180	0.66	-1.5
2,711,373	+		LRK53_RS12180	0.66	-2.5
2,711,374	-		LRK53_RS12180	0.66	+1.1
2,711,451	+		LRK53_RS12180	0.74	+0.2
2,711,452	-		LRK53_RS12180	0.74	-0.7
2,711,452	-		LRK53_RS12180	0.74	+1.0
2,711,452	-		LRK53_RS12180	0.74	-3.4
2,711,452	-		LRK53_RS12180	0.74	+0.4
2,711,528	-		LRK53_RS12180	0.81	-0.6
2,711,528	-		LRK53_RS12180	0.81	-0.0
2,711,528	-		LRK53_RS12180	0.81	-0.0
2,711,528	-		LRK53_RS12180	0.81	+0.3
2,711,528	-		LRK53_RS12180	0.81	-1.0
2,711,528	-		LRK53_RS12180	0.81	+0.8
2,711,528	-		LRK53_RS12180	0.81	-0.0
2,711,601	+		LRK53_RS12180	0.89	-1.5
2,711,601	+		LRK53_RS12180	0.89	+1.4
2,711,601	+		LRK53_RS12180	0.89	-1.0
2,711,601	+		LRK53_RS12180	0.89	-1.4
2,711,601	+		LRK53_RS12180	0.89	-1.2
2,711,601	+		LRK53_RS12180	0.89	-0.2
2,711,601	+		LRK53_RS12180	0.89	-0.0
2,711,601	+		LRK53_RS12180	0.89	-0.7
2,711,601	+		LRK53_RS12180	0.89	-0.7
2,711,601	+		LRK53_RS12180	0.89	-0.0
2,711,602	-		LRK53_RS12180	0.89	-0.7
2,711,602	-		LRK53_RS12180	0.89	+0.1
2,711,602	-		LRK53_RS12180	0.89	-0.2
2,711,602	-		LRK53_RS12180	0.89	+0.0
2,711,602	-		LRK53_RS12180	0.89	+0.4
2,711,602	-		LRK53_RS12180	0.89	-1.4
2,711,602	-		LRK53_RS12180	0.89	-0.5
2,711,622	+				-1.0
2,711,622	+				-1.4
2,711,622	+				-0.2
2,711,623	-				+1.1
2,711,702	-				-1.5
2,711,702	-				-0.3
2,711,705	+				-0.7
2,711,705	+				-0.8
2,711,705	+				-0.0
2,711,705	+				-0.5
2,711,705	+				+0.6
2,711,705	+				+0.4
2,711,705	+				-0.4
2,711,705	+				-3.1
2,711,705	+				+0.5
2,711,705	+				-0.0
2,711,705	+				+1.4
2,711,705	+				-3.0
2,711,705	+				+2.2
2,711,705	+				-0.1
2,711,705	+				-1.4
2,711,705	+				+0.3
2,711,705	+				-0.4
2,711,705	+				+0.1
2,711,706	-				+0.7
2,711,706	-				-0.9
2,711,706	-				-0.8
2,711,706	-				-0.8
2,711,706	-				-2.1
2,711,706	-				-0.4
2,711,706	-				-1.3
2,711,706	-				+0.4
2,711,706	-				+0.8
2,711,706	-				-1.1
2,711,706	-				-1.1
2,711,706	-				-1.5
2,711,706	-				-0.3
2,711,706	-				+2.1
2,711,706	-				+0.6
2,711,706	-				+1.0
2,711,706	-				-1.4
2,711,706	-				-0.5
2,711,706	-				-0.6
2,711,751	+				-0.3
2,711,751	+				+1.0
2,711,751	+				+0.5
2,711,751	+				-0.9
2,711,752	-				-3.0
2,711,797	+				-0.6
2,711,797	+				-0.9
2,711,797	+				+0.4
2,711,797	+				-1.1
2,711,797	+				-0.1
2,711,797	+				-0.1
2,711,797	+				+0.3
2,711,797	+				+0.9
2,711,797	+				-1.9
2,711,797	+				-0.8
2,711,797	+				-1.0
2,711,797	+				-1.4
2,711,797	+				-1.5
2,711,797	+				-0.7
2,711,797	+				+0.5
2,711,797	+				-0.1
2,711,797	+				+0.5
2,711,797	+				-0.4
2,711,797	+				+0.1
2,711,797	+				-1.4
2,711,797	+				-0.0
2,711,797	+				-3.8
2,711,797	+				-1.3
2,711,797	+				-1.4
2,711,798	-				-2.5
2,711,798	-				-0.4
2,711,798	-				-1.4
2,711,798	-				-0.9
2,711,798	-				-1.4
2,711,798	-				-1.5
2,711,798	-				-1.3
2,711,798	-				-0.0
2,711,798	-				-0.0
2,711,798	-				-1.8
2,711,798	-				-1.3
2,711,798	-				-0.2
2,711,798	-				+0.2
2,711,798	-				-1.4
2,711,798	-				-2.3
2,711,798	-				-0.7
2,711,799	+				-0.2
2,711,799	+				+0.8
2,711,799	+				+0.3
2,711,799	+				-1.6
2,711,799	+				-1.3
2,711,799	+				-1.1
2,711,799	+				-2.5
2,711,799	+				-0.7
2,711,799	+				+0.5
2,711,799	+				-0.1
2,711,799	+				+0.2
2,711,800	-				-0.7
2,711,800	-				-2.1
2,711,800	-				-0.0
2,711,800	-				-0.2
2,711,800	-				-0.8
2,711,800	-				-1.0
2,711,800	-				-0.4
2,711,800	-				+0.9
2,711,800	-				-3.1
2,711,800	-				-2.5
2,711,800	-				-0.8
2,711,804	+				-0.5
2,711,805	-				-1.8
2,711,805	-				-2.7
2,711,813	-				-1.0
2,711,837	+				-0.5
2,711,838	-				-1.7
2,711,838	-				-0.3
2,712,096	+				-0.4
2,712,096	+				-0.5
2,712,096	+				+0.2
2,712,097	-				-0.7
2,712,097	-				-1.0
2,712,097	-				-0.9
2,712,097	-				+0.6
2,712,097	-				-0.4
2,712,117	+				-1.4
2,712,117	+				-0.6
2,712,117	+				+0.9
2,712,117	+				+0.2
2,712,118	-				-0.7
2,712,118	-				-0.4
2,712,136	+				-0.2
2,712,136	+				-1.2
2,712,137	-				-0.5
2,712,137	-				-1.8
2,712,137	-				-1.4
2,712,194	+				-0.5
2,712,194	+				-1.5
2,712,194	+				-1.6
2,712,195	-				+1.2
2,712,195	-				-1.5
2,712,195	-				+0.5
2,712,195	-				-0.0
2,712,207	-				-1.0
2,712,258	+				+0.2
2,712,259	-				-0.9
2,712,286	+				-1.4
2,712,286	+				+0.5
2,712,286	+				-1.5
2,712,286	+				-0.4
2,712,286	+				+0.8
2,712,286	+				-0.5
2,712,286	+				-1.3
2,712,286	+				-1.3
2,712,286	+				-0.7
2,712,286	+				-0.2
2,712,286	+				-0.0
2,712,286	+				+1.1
2,712,287	-				-1.8
2,712,287	-				+1.1
2,712,287	-				-0.8
2,712,287	-				-0.0
2,712,287	-				-1.6
2,712,287	-				-1.8
2,712,287	-				+0.2
2,712,287	-				-2.0
2,712,287	-				+1.0
2,712,287	-				-0.1
2,712,287	-				-0.3
2,712,287	-				+1.9
2,712,287	-				-1.3
2,712,287	-				+1.2
2,712,287	-				-0.1
2,712,287	-				+1.2
2,712,287	-				-0.8
2,712,287	-				+0.5
2,712,287	-				+0.5
2,712,287	-				+1.2
2,712,287	-				+0.1
2,712,288	+				+0.6
2,712,288	+				-0.2
2,712,288	+				-0.6
2,712,288	+				+0.5
2,712,288	+				-0.5
2,712,288	+				-0.7
2,712,288	+				-0.8
2,712,289	-				-1.0
2,712,289	-				-1.6
2,712,289	-				-1.3
2,712,289	-				-0.5
2,712,409	+				-0.7
2,712,428	-				-0.7
2,712,428	-				+1.3
2,712,428	-				-3.1
2,712,452	-				-1.0
2,712,475	+				-0.0
2,712,476	-				-0.4
2,712,484	+				+0.5
2,712,484	+				-3.2
2,712,484	+				-1.0
2,712,485	-				-0.4
2,712,514	+				-1.2
2,712,514	+				+1.1
2,712,515	-				+0.8
2,712,525	+				-1.1
2,712,526	-				-0.7
2,712,527	+				-0.8
2,712,527	+				-0.0
2,712,528	-				-2.3
2,712,528	-				-0.7
2,712,528	-				-0.2
2,712,558	+				-0.9
2,712,607	-				-0.2
2,712,644	+				+0.1
2,712,644	+				-1.0
2,712,645	-				-2.5
2,712,689	+		LRK53_RS12190	0.13	-1.1
2,712,689	+		LRK53_RS12190	0.13	-0.8
2,712,690	-		LRK53_RS12190	0.13	+0.5
2,712,690	-		LRK53_RS12190	0.13	-2.6
2,712,690	-		LRK53_RS12190	0.13	-0.4
2,712,701	+		LRK53_RS12190	0.15	+0.1
2,712,701	+		LRK53_RS12190	0.15	-1.3
2,712,701	+		LRK53_RS12190	0.15	+0.4
2,712,702	-		LRK53_RS12190	0.15	-1.0
2,712,702	-		LRK53_RS12190	0.15	-0.7