Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38125

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38115 and QEN71_RS38120 overlap by 1 nucleotidesQEN71_RS38120 and QEN71_RS38125 overlap by 4 nucleotidesQEN71_RS38125 and QEN71_RS38130 are separated by 313 nucleotides QEN71_RS38115: QEN71_RS38115 - type III secretion system outer membrane ring subunit SctC, at 1,932,832 to 1,934,919 _RS38115 QEN71_RS38120: QEN71_RS38120 - type III secretion system export apparatus subunit SctS, at 1,934,919 to 1,935,197 _RS38120 QEN71_RS38125: QEN71_RS38125 - type III secretion system export apparatus subunit SctV, at 1,935,194 to 1,937,389 _RS38125 QEN71_RS38130: QEN71_RS38130 - autoinducer binding domain-containing protein, at 1,937,703 to 1,938,551 _RS38130 Position (kb) 1935 1936 1937 1938Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1934.220 kb on - strand, within QEN71_RS38115at 1934.303 kb on + strand, within QEN71_RS38115at 1934.303 kb on + strand, within QEN71_RS38115at 1934.304 kb on - strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.414 kb on + strand, within QEN71_RS38115at 1934.415 kb on - strand, within QEN71_RS38115at 1934.415 kb on - strand, within QEN71_RS38115at 1934.415 kb on - strand, within QEN71_RS38115at 1934.558 kb on + strand, within QEN71_RS38115at 1934.559 kb on - strand, within QEN71_RS38115at 1934.576 kb on + strand, within QEN71_RS38115at 1934.576 kb on + strand, within QEN71_RS38115at 1934.576 kb on + strand, within QEN71_RS38115at 1934.577 kb on - strand, within QEN71_RS38115at 1934.577 kb on - strand, within QEN71_RS38115at 1934.579 kb on + strand, within QEN71_RS38115at 1934.579 kb on + strand, within QEN71_RS38115at 1934.580 kb on - strand, within QEN71_RS38115at 1934.594 kb on + strand, within QEN71_RS38115at 1934.595 kb on - strand, within QEN71_RS38115at 1934.595 kb on - strand, within QEN71_RS38115at 1935.277 kb on + strandat 1935.278 kb on - strandat 1935.278 kb on - strandat 1935.278 kb on - strandat 1935.309 kb on + strandat 1935.309 kb on + strandat 1935.310 kb on - strandat 1935.310 kb on - strandat 1935.361 kb on - strandat 1936.089 kb on + strand, within QEN71_RS38125at 1936.090 kb on - strand, within QEN71_RS38125at 1936.090 kb on - strand, within QEN71_RS38125at 1936.098 kb on + strand, within QEN71_RS38125at 1936.322 kb on - strand, within QEN71_RS38125at 1936.526 kb on + strand, within QEN71_RS38125at 1936.527 kb on - strand, within QEN71_RS38125at 1936.717 kb on + strand, within QEN71_RS38125at 1936.717 kb on + strand, within QEN71_RS38125at 1936.717 kb on + strand, within QEN71_RS38125at 1936.718 kb on - strand, within QEN71_RS38125at 1936.718 kb on - strand, within QEN71_RS38125at 1936.870 kb on + strand, within QEN71_RS38125at 1937.087 kb on - strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.163 kb on + strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.164 kb on - strand, within QEN71_RS38125at 1937.398 kb on - strandat 1937.426 kb on + strandat 1937.426 kb on + strandat 1937.426 kb on + strandat 1937.426 kb on + strandat 1937.427 kb on - strandat 1937.427 kb on - strandat 1937.427 kb on - strandat 1937.427 kb on - strandat 1937.430 kb on - strandat 1937.450 kb on - strandat 1937.548 kb on + strandat 1937.548 kb on + strandat 1937.548 kb on + strandat 1937.549 kb on - strandat 1937.625 kb on + strandat 1937.626 kb on - strandat 1937.647 kb on + strandat 1937.647 kb on + strandat 1937.647 kb on + strandat 1937.648 kb on - strandat 1937.682 kb on + strandat 1937.682 kb on + strandat 1937.683 kb on - strandat 1937.683 kb on - strandat 1937.732 kb on - strandat 1937.732 kb on - strandat 1937.732 kb on - strandat 1937.732 kb on - strandat 1937.732 kb on - strandat 1937.798 kb on + strand, within QEN71_RS38130at 1937.798 kb on + strand, within QEN71_RS38130at 1937.798 kb on + strand, within QEN71_RS38130at 1937.798 kb on + strand, within QEN71_RS38130at 1937.798 kb on + strand, within QEN71_RS38130at 1937.799 kb on - strand, within QEN71_RS38130at 1937.799 kb on - strand, within QEN71_RS38130at 1937.890 kb on - strand, within QEN71_RS38130at 1937.890 kb on - strand, within QEN71_RS38130at 1938.027 kb on + strand, within QEN71_RS38130at 1938.027 kb on + strand, within QEN71_RS38130at 1938.028 kb on - strand, within QEN71_RS38130at 1938.081 kb on - strand, within QEN71_RS38130at 1938.198 kb on + strand, within QEN71_RS38130at 1938.198 kb on + strand, within QEN71_RS38130at 1938.198 kb on + strand, within QEN71_RS38130at 1938.199 kb on - strand, within QEN71_RS38130at 1938.199 kb on - strand, within QEN71_RS38130at 1938.199 kb on - strand, within QEN71_RS38130at 1938.199 kb on - strand, within QEN71_RS38130at 1938.227 kb on - strand, within QEN71_RS38130at 1938.244 kb on + strand, within QEN71_RS38130at 1938.245 kb on - strand, within QEN71_RS38130at 1938.282 kb on + strand, within QEN71_RS38130at 1938.282 kb on + strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.283 kb on - strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.286 kb on + strand, within QEN71_RS38130at 1938.287 kb on - strand, within QEN71_RS38130at 1938.287 kb on - strand, within QEN71_RS38130at 1938.287 kb on - strand, within QEN71_RS38130at 1938.287 kb on - strand, within QEN71_RS38130at 1938.297 kb on + strand, within QEN71_RS38130at 1938.297 kb on + strand, within QEN71_RS38130at 1938.298 kb on - strand, within QEN71_RS38130at 1938.298 kb on - strand, within QEN71_RS38130at 1938.298 kb on - strand, within QEN71_RS38130at 1938.319 kb on + strand, within QEN71_RS38130at 1938.342 kb on - strand, within QEN71_RS38130at 1938.342 kb on - strand, within QEN71_RS38130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,934,220 - QEN71_RS38115 0.66 -0.2
1,934,303 + QEN71_RS38115 0.70 -0.4
1,934,303 + QEN71_RS38115 0.70 +0.1
1,934,304 - QEN71_RS38115 0.70 -0.0
1,934,414 + QEN71_RS38115 0.76 -0.4
1,934,414 + QEN71_RS38115 0.76 -0.6
1,934,414 + QEN71_RS38115 0.76 -0.1
1,934,414 + QEN71_RS38115 0.76 +0.3
1,934,414 + QEN71_RS38115 0.76 -0.1
1,934,414 + QEN71_RS38115 0.76 +0.1
1,934,414 + QEN71_RS38115 0.76 +0.9
1,934,414 + QEN71_RS38115 0.76 -0.9
1,934,414 + QEN71_RS38115 0.76 +0.3
1,934,415 - QEN71_RS38115 0.76 -0.8
1,934,415 - QEN71_RS38115 0.76 +0.4
1,934,415 - QEN71_RS38115 0.76 +0.2
1,934,558 + QEN71_RS38115 0.83 +1.4
1,934,559 - QEN71_RS38115 0.83 -0.5
1,934,576 + QEN71_RS38115 0.84 -0.4
1,934,576 + QEN71_RS38115 0.84 -0.2
1,934,576 + QEN71_RS38115 0.84 -0.4
1,934,577 - QEN71_RS38115 0.84 +0.5
1,934,577 - QEN71_RS38115 0.84 -0.4
1,934,579 + QEN71_RS38115 0.84 +0.4
1,934,579 + QEN71_RS38115 0.84 +0.8
1,934,580 - QEN71_RS38115 0.84 +0.5
1,934,594 + QEN71_RS38115 0.84 -0.1
1,934,595 - QEN71_RS38115 0.84 -0.7
1,934,595 - QEN71_RS38115 0.84 +0.7
1,935,277 + +0.4
1,935,278 - -0.5
1,935,278 - -0.6
1,935,278 - +1.1
1,935,309 + +0.4
1,935,309 + +0.5
1,935,310 - +0.3
1,935,310 - +0.3
1,935,361 - -0.3
1,936,089 + QEN71_RS38125 0.41 -0.8
1,936,090 - QEN71_RS38125 0.41 -0.3
1,936,090 - QEN71_RS38125 0.41 -0.3
1,936,098 + QEN71_RS38125 0.41 -0.1
1,936,322 - QEN71_RS38125 0.51 +0.8
1,936,526 + QEN71_RS38125 0.61 -1.7
1,936,527 - QEN71_RS38125 0.61 -2.9
1,936,717 + QEN71_RS38125 0.69 -2.0
1,936,717 + QEN71_RS38125 0.69 -0.9
1,936,717 + QEN71_RS38125 0.69 -0.2
1,936,718 - QEN71_RS38125 0.69 +0.2
1,936,718 - QEN71_RS38125 0.69 -0.2
1,936,870 + QEN71_RS38125 0.76 +0.2
1,937,087 - QEN71_RS38125 0.86 -0.0
1,937,163 + QEN71_RS38125 0.90 +0.8
1,937,163 + QEN71_RS38125 0.90 -0.7
1,937,163 + QEN71_RS38125 0.90 -1.4
1,937,163 + QEN71_RS38125 0.90 -0.2
1,937,163 + QEN71_RS38125 0.90 -0.3
1,937,163 + QEN71_RS38125 0.90 -0.4
1,937,163 + QEN71_RS38125 0.90 +0.2
1,937,163 + QEN71_RS38125 0.90 -1.1
1,937,164 - QEN71_RS38125 0.90 -0.3
1,937,164 - QEN71_RS38125 0.90 -2.1
1,937,164 - QEN71_RS38125 0.90 +0.1
1,937,164 - QEN71_RS38125 0.90 -1.2
1,937,164 - QEN71_RS38125 0.90 -0.8
1,937,164 - QEN71_RS38125 0.90 -0.2
1,937,164 - QEN71_RS38125 0.90 -0.7
1,937,164 - QEN71_RS38125 0.90 +0.0
1,937,164 - QEN71_RS38125 0.90 +0.5
1,937,164 - QEN71_RS38125 0.90 -0.5
1,937,398 - -1.3
1,937,426 + -0.6
1,937,426 + +0.9
1,937,426 + +0.7
1,937,426 + +0.2
1,937,427 - -0.2
1,937,427 - -1.6
1,937,427 - -0.9
1,937,427 - -0.6
1,937,430 - +0.6
1,937,450 - -0.3
1,937,548 + -0.1
1,937,548 + +0.5
1,937,548 + -0.9
1,937,549 - -2.1
1,937,625 + -1.1
1,937,626 - +1.7
1,937,647 + -1.1
1,937,647 + +0.0
1,937,647 + +0.3
1,937,648 - -1.4
1,937,682 + -1.0
1,937,682 + -0.1
1,937,683 - -1.4
1,937,683 - -0.1
1,937,732 - -0.0
1,937,732 - -0.1
1,937,732 - -1.4
1,937,732 - -0.3
1,937,732 - -0.6
1,937,798 + QEN71_RS38130 0.11 -1.5
1,937,798 + QEN71_RS38130 0.11 -0.1
1,937,798 + QEN71_RS38130 0.11 -0.9
1,937,798 + QEN71_RS38130 0.11 -0.7
1,937,798 + QEN71_RS38130 0.11 +1.7
1,937,799 - QEN71_RS38130 0.11 +0.2
1,937,799 - QEN71_RS38130 0.11 -0.2
1,937,890 - QEN71_RS38130 0.22 -0.2
1,937,890 - QEN71_RS38130 0.22 -0.5
1,938,027 + QEN71_RS38130 0.38 +0.8
1,938,027 + QEN71_RS38130 0.38 +0.3
1,938,028 - QEN71_RS38130 0.38 -1.1
1,938,081 - QEN71_RS38130 0.45 +0.8
1,938,198 + QEN71_RS38130 0.58 +0.0
1,938,198 + QEN71_RS38130 0.58 +1.2
1,938,198 + QEN71_RS38130 0.58 +1.5
1,938,199 - QEN71_RS38130 0.58 -0.2
1,938,199 - QEN71_RS38130 0.58 -0.3
1,938,199 - QEN71_RS38130 0.58 -0.4
1,938,199 - QEN71_RS38130 0.58 +2.0
1,938,227 - QEN71_RS38130 0.62 +0.6
1,938,244 + QEN71_RS38130 0.64 +0.3
1,938,245 - QEN71_RS38130 0.64 +0.3
1,938,282 + QEN71_RS38130 0.68 +0.8
1,938,282 + QEN71_RS38130 0.68 +0.1
1,938,283 - QEN71_RS38130 0.68 -0.9
1,938,283 - QEN71_RS38130 0.68 -0.5
1,938,283 - QEN71_RS38130 0.68 +0.3
1,938,283 - QEN71_RS38130 0.68 -1.3
1,938,283 - QEN71_RS38130 0.68 -0.4
1,938,283 - QEN71_RS38130 0.68 +1.0
1,938,286 + QEN71_RS38130 0.69 -0.5
1,938,286 + QEN71_RS38130 0.69 -0.9
1,938,286 + QEN71_RS38130 0.69 +1.1
1,938,286 + QEN71_RS38130 0.69 -0.8
1,938,286 + QEN71_RS38130 0.69 -0.3
1,938,286 + QEN71_RS38130 0.69 -0.2
1,938,287 - QEN71_RS38130 0.69 -0.7
1,938,287 - QEN71_RS38130 0.69 +0.7
1,938,287 - QEN71_RS38130 0.69 +0.1
1,938,287 - QEN71_RS38130 0.69 -0.7
1,938,297 + QEN71_RS38130 0.70 -0.9
1,938,297 + QEN71_RS38130 0.70 -0.3
1,938,298 - QEN71_RS38130 0.70 -0.1
1,938,298 - QEN71_RS38130 0.70 +1.0
1,938,298 - QEN71_RS38130 0.70 -0.2
1,938,319 + QEN71_RS38130 0.73 +0.1
1,938,342 - QEN71_RS38130 0.75 -0.2
1,938,342 - QEN71_RS38130 0.75 +0.7

Or see this region's nucleotide sequence