Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36855 and QEN71_RS36860 are separated by 82 nucleotides QEN71_RS36860 and QEN71_RS36865 are separated by 85 nucleotides QEN71_RS36865 and QEN71_RS36870 are separated by 59 nucleotides QEN71_RS36870 and QEN71_RS36875 are separated by 225 nucleotides
QEN71_RS36855: QEN71_RS36855 - type III secretion protein, at 1,646,031 to 1,646,273
_RS36855
QEN71_RS36860: QEN71_RS36860 - hypothetical protein, at 1,646,356 to 1,646,577
_RS36860
QEN71_RS36865: QEN71_RS36865 - CesT family type III secretion system chaperone, at 1,646,663 to 1,647,118
_RS36865
QEN71_RS36870: QEN71_RS36870 - MEKHLA domain-containing protein, at 1,647,178 to 1,647,636
_RS36870
QEN71_RS36875: QEN71_RS36875 - nitrite/sulfite reductase, at 1,647,862 to 1,649,652
_RS36875
Position (kb)
1647
1648 Strain fitness (log2 ratio)
-1
0
1 at 1646.208 kb on + strand, within QEN71_RS36855 at 1646.209 kb on - strand, within QEN71_RS36855 at 1646.305 kb on + strand at 1646.575 kb on + strand at 1646.646 kb on + strand at 1647.146 kb on - strand at 1647.490 kb on + strand, within QEN71_RS36870 at 1647.759 kb on + strand at 1647.760 kb on - strand at 1647.760 kb on - strand at 1647.857 kb on + strand at 1647.866 kb on - strand at 1647.872 kb on - strand at 1647.872 kb on - strand at 1647.872 kb on - strand at 1648.093 kb on + strand, within QEN71_RS36875 at 1648.117 kb on + strand, within QEN71_RS36875 at 1648.615 kb on + strand, within QEN71_RS36875 at 1648.616 kb on - strand, within QEN71_RS36875
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,646,208 + QEN71_RS36855 0.73 -0.1 1,646,209 - QEN71_RS36855 0.73 +0.4 1,646,305 + -0.2 1,646,575 + -0.8 1,646,646 + +0.2 1,647,146 - -0.4 1,647,490 + QEN71_RS36870 0.68 +0.2 1,647,759 + -1.0 1,647,760 - -1.1 1,647,760 - -0.7 1,647,857 + -0.0 1,647,866 - -1.5 1,647,872 - -0.1 1,647,872 - -0.1 1,647,872 - -0.1 1,648,093 + QEN71_RS36875 0.13 -0.0 1,648,117 + QEN71_RS36875 0.14 +0.1 1,648,615 + QEN71_RS36875 0.42 -1.1 1,648,616 - QEN71_RS36875 0.42 +0.2
Or see this region's nucleotide sequence