Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19655 and QEN71_RS19660 are separated by 139 nucleotides QEN71_RS19660 and QEN71_RS19665 are separated by 89 nucleotides QEN71_RS19665 and QEN71_RS19670 are separated by 169 nucleotides
QEN71_RS19655: QEN71_RS19655 - amidohydrolase family protein, at 4,378,587 to 4,379,438
_RS19655
QEN71_RS19660: QEN71_RS19660 - LysR substrate-binding domain-containing protein, at 4,379,578 to 4,380,834
_RS19660
QEN71_RS19665: QEN71_RS19665 - LysR family transcriptional regulator, at 4,380,924 to 4,381,037
_RS19665
QEN71_RS19670: QEN71_RS19670 - DUF1295 domain-containing protein, at 4,381,207 to 4,381,986
_RS19670
Position (kb) 4379
4380
4381 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4378.888 kb on + strand, within QEN71_RS19655 at 4378.889 kb on - strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.013 kb on + strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.014 kb on - strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.032 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.172 kb on + strand, within QEN71_RS19655 at 4379.233 kb on + strand, within QEN71_RS19655 at 4379.234 kb on - strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.237 kb on + strand, within QEN71_RS19655 at 4379.238 kb on - strand, within QEN71_RS19655 at 4379.512 kb on - strand at 4379.901 kb on + strand, within QEN71_RS19660 at 4380.055 kb on + strand, within QEN71_RS19660 at 4380.130 kb on + strand, within QEN71_RS19660 at 4380.131 kb on - strand, within QEN71_RS19660 at 4380.320 kb on + strand, within QEN71_RS19660 at 4380.412 kb on + strand, within QEN71_RS19660 at 4380.727 kb on + strand at 4380.727 kb on + strand at 4380.729 kb on + strand at 4380.729 kb on + strand at 4380.729 kb on + strand at 4380.819 kb on + strand at 4380.820 kb on - strand at 4380.917 kb on - strand at 4381.158 kb on - strand at 4381.158 kb on - strand at 4381.158 kb on - strand at 4381.160 kb on - strand at 4381.170 kb on + strand at 4381.170 kb on + strand at 4381.171 kb on - strand at 4381.171 kb on - strand at 4381.351 kb on + strand, within QEN71_RS19670 at 4381.352 kb on - strand, within QEN71_RS19670 at 4381.765 kb on + strand, within QEN71_RS19670 at 4381.795 kb on + strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670 at 4381.796 kb on - strand, within QEN71_RS19670
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 4,378,888 + QEN71_RS19655 0.35 -2.0 4,378,889 - QEN71_RS19655 0.35 -1.1 4,379,013 + QEN71_RS19655 0.50 -0.2 4,379,013 + QEN71_RS19655 0.50 -0.3 4,379,014 - QEN71_RS19655 0.50 +0.3 4,379,014 - QEN71_RS19655 0.50 -0.7 4,379,014 - QEN71_RS19655 0.50 +0.2 4,379,032 + QEN71_RS19655 0.52 -0.3 4,379,032 + QEN71_RS19655 0.52 +0.4 4,379,172 + QEN71_RS19655 0.69 -1.0 4,379,172 + QEN71_RS19655 0.69 -0.1 4,379,233 + QEN71_RS19655 0.76 -1.5 4,379,234 - QEN71_RS19655 0.76 -0.7 4,379,237 + QEN71_RS19655 0.76 -0.1 4,379,237 + QEN71_RS19655 0.76 -0.2 4,379,237 + QEN71_RS19655 0.76 -0.9 4,379,238 - QEN71_RS19655 0.76 +0.1 4,379,512 - -1.3 4,379,901 + QEN71_RS19660 0.26 +0.2 4,380,055 + QEN71_RS19660 0.38 +0.9 4,380,130 + QEN71_RS19660 0.44 +0.1 4,380,131 - QEN71_RS19660 0.44 -0.0 4,380,320 + QEN71_RS19660 0.59 +1.4 4,380,412 + QEN71_RS19660 0.66 +1.1 4,380,727 + +0.1 4,380,727 + -0.2 4,380,729 + -0.2 4,380,729 + +0.6 4,380,729 + -0.9 4,380,819 + -1.5 4,380,820 - +0.4 4,380,917 - -0.1 4,381,158 - -0.1 4,381,158 - -0.8 4,381,158 - -0.9 4,381,160 - +0.2 4,381,170 + +0.1 4,381,170 + +0.6 4,381,171 - +2.3 4,381,171 - -0.2 4,381,351 + QEN71_RS19670 0.18 -1.0 4,381,352 - QEN71_RS19670 0.19 +0.0 4,381,765 + QEN71_RS19670 0.72 +1.7 4,381,795 + QEN71_RS19670 0.75 +0.1 4,381,796 - QEN71_RS19670 0.76 +0.2 4,381,796 - QEN71_RS19670 0.76 -0.2 4,381,796 - QEN71_RS19670 0.76 -0.7
Or see this region's nucleotide sequence