Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08405

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08400 and QEN71_RS08405 are separated by 51 nucleotidesQEN71_RS08405 and QEN71_RS08410 are separated by 87 nucleotidesQEN71_RS08410 and QEN71_RS08415 are separated by 23 nucleotides QEN71_RS08400: QEN71_RS08400 - 3-keto-5-aminohexanoate cleavage protein, at 1,872,651 to 1,873,580 _RS08400 QEN71_RS08405: QEN71_RS08405 - L-carnitine dehydrogenase, at 1,873,632 to 1,874,597 _RS08405 QEN71_RS08410: QEN71_RS08410 - thioesterase family protein, at 1,874,685 to 1,875,176 _RS08410 QEN71_RS08415: QEN71_RS08415 - alpha/beta hydrolase, at 1,875,200 to 1,876,135 _RS08415 Position (kb) 1873 1874 1875Strain fitness (log2 ratio) -2 -1 0 1 2at 1872.863 kb on + strand, within QEN71_RS08400at 1873.068 kb on + strand, within QEN71_RS08400at 1873.069 kb on - strand, within QEN71_RS08400at 1873.069 kb on - strand, within QEN71_RS08400at 1873.069 kb on - strand, within QEN71_RS08400at 1873.069 kb on - strand, within QEN71_RS08400at 1873.069 kb on - strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.074 kb on + strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.075 kb on - strand, within QEN71_RS08400at 1873.263 kb on - strand, within QEN71_RS08400at 1873.525 kb on + strandat 1874.043 kb on - strand, within QEN71_RS08405at 1874.043 kb on - strand, within QEN71_RS08405at 1874.043 kb on - strand, within QEN71_RS08405at 1874.043 kb on - strand, within QEN71_RS08405at 1874.070 kb on + strand, within QEN71_RS08405at 1874.070 kb on + strand, within QEN71_RS08405at 1874.070 kb on + strand, within QEN71_RS08405at 1874.071 kb on - strand, within QEN71_RS08405at 1874.071 kb on - strand, within QEN71_RS08405at 1874.071 kb on - strand, within QEN71_RS08405at 1874.145 kb on + strand, within QEN71_RS08405at 1874.145 kb on + strand, within QEN71_RS08405at 1874.145 kb on + strand, within QEN71_RS08405at 1874.145 kb on + strand, within QEN71_RS08405at 1874.145 kb on + strand, within QEN71_RS08405at 1874.146 kb on - strand, within QEN71_RS08405at 1874.146 kb on - strand, within QEN71_RS08405at 1874.146 kb on - strand, within QEN71_RS08405at 1874.146 kb on - strand, within QEN71_RS08405at 1874.146 kb on - strand, within QEN71_RS08405at 1874.199 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.341 kb on - strand, within QEN71_RS08405at 1874.595 kb on + strandat 1874.595 kb on + strandat 1874.596 kb on - strandat 1874.596 kb on - strandat 1874.596 kb on - strandat 1874.712 kb on + strandat 1874.746 kb on - strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.772 kb on + strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.773 kb on - strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.862 kb on + strand, within QEN71_RS08410at 1874.863 kb on - strand, within QEN71_RS08410at 1874.863 kb on - strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.886 kb on + strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.887 kb on - strand, within QEN71_RS08410at 1874.967 kb on + strand, within QEN71_RS08410at 1875.132 kb on + strandat 1875.132 kb on + strandat 1875.175 kb on - strandat 1875.175 kb on - strandat 1875.297 kb on - strand, within QEN71_RS08415at 1875.297 kb on - strand, within QEN71_RS08415at 1875.297 kb on - strand, within QEN71_RS08415at 1875.330 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.404 kb on + strand, within QEN71_RS08415at 1875.446 kb on + strand, within QEN71_RS08415at 1875.447 kb on - strand, within QEN71_RS08415at 1875.447 kb on - strand, within QEN71_RS08415at 1875.520 kb on + strand, within QEN71_RS08415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,872,863 + QEN71_RS08400 0.23 -0.5
1,873,068 + QEN71_RS08400 0.45 +0.7
1,873,069 - QEN71_RS08400 0.45 +0.3
1,873,069 - QEN71_RS08400 0.45 -0.4
1,873,069 - QEN71_RS08400 0.45 -0.7
1,873,069 - QEN71_RS08400 0.45 -1.0
1,873,069 - QEN71_RS08400 0.45 -0.3
1,873,074 + QEN71_RS08400 0.45 -0.0
1,873,074 + QEN71_RS08400 0.45 +0.9
1,873,074 + QEN71_RS08400 0.45 +0.0
1,873,074 + QEN71_RS08400 0.45 -1.0
1,873,074 + QEN71_RS08400 0.45 -1.2
1,873,074 + QEN71_RS08400 0.45 -0.2
1,873,074 + QEN71_RS08400 0.45 +1.1
1,873,074 + QEN71_RS08400 0.45 +0.4
1,873,074 + QEN71_RS08400 0.45 +0.5
1,873,075 - QEN71_RS08400 0.46 -0.7
1,873,075 - QEN71_RS08400 0.46 -0.7
1,873,075 - QEN71_RS08400 0.46 +0.6
1,873,075 - QEN71_RS08400 0.46 +0.6
1,873,075 - QEN71_RS08400 0.46 -0.3
1,873,075 - QEN71_RS08400 0.46 -0.3
1,873,075 - QEN71_RS08400 0.46 +1.6
1,873,263 - QEN71_RS08400 0.66 +0.6
1,873,525 + +0.4
1,874,043 - QEN71_RS08405 0.43 -1.0
1,874,043 - QEN71_RS08405 0.43 +0.6
1,874,043 - QEN71_RS08405 0.43 -1.1
1,874,043 - QEN71_RS08405 0.43 +0.0
1,874,070 + QEN71_RS08405 0.45 -0.4
1,874,070 + QEN71_RS08405 0.45 -0.1
1,874,070 + QEN71_RS08405 0.45 +0.2
1,874,071 - QEN71_RS08405 0.45 +0.1
1,874,071 - QEN71_RS08405 0.45 +0.0
1,874,071 - QEN71_RS08405 0.45 -0.3
1,874,145 + QEN71_RS08405 0.53 -1.5
1,874,145 + QEN71_RS08405 0.53 -0.2
1,874,145 + QEN71_RS08405 0.53 -1.1
1,874,145 + QEN71_RS08405 0.53 +0.7
1,874,145 + QEN71_RS08405 0.53 +1.1
1,874,146 - QEN71_RS08405 0.53 -0.4
1,874,146 - QEN71_RS08405 0.53 -0.7
1,874,146 - QEN71_RS08405 0.53 +0.4
1,874,146 - QEN71_RS08405 0.53 -0.6
1,874,146 - QEN71_RS08405 0.53 +0.0
1,874,199 - QEN71_RS08405 0.59 +1.2
1,874,341 - QEN71_RS08405 0.73 +0.9
1,874,341 - QEN71_RS08405 0.73 +0.4
1,874,341 - QEN71_RS08405 0.73 -0.0
1,874,341 - QEN71_RS08405 0.73 -1.2
1,874,595 + +0.0
1,874,595 + +0.2
1,874,596 - +0.7
1,874,596 - -1.0
1,874,596 - -1.2
1,874,712 + +0.3
1,874,746 - QEN71_RS08410 0.12 -0.7
1,874,772 + QEN71_RS08410 0.18 -1.6
1,874,772 + QEN71_RS08410 0.18 -0.3
1,874,772 + QEN71_RS08410 0.18 +0.1
1,874,772 + QEN71_RS08410 0.18 +0.2
1,874,772 + QEN71_RS08410 0.18 -0.0
1,874,772 + QEN71_RS08410 0.18 +0.8
1,874,772 + QEN71_RS08410 0.18 -0.6
1,874,772 + QEN71_RS08410 0.18 +0.6
1,874,773 - QEN71_RS08410 0.18 +1.3
1,874,773 - QEN71_RS08410 0.18 -1.2
1,874,773 - QEN71_RS08410 0.18 -0.7
1,874,862 + QEN71_RS08410 0.36 +0.1
1,874,862 + QEN71_RS08410 0.36 -1.2
1,874,862 + QEN71_RS08410 0.36 +0.1
1,874,862 + QEN71_RS08410 0.36 -0.1
1,874,862 + QEN71_RS08410 0.36 -0.4
1,874,862 + QEN71_RS08410 0.36 +0.3
1,874,863 - QEN71_RS08410 0.36 -0.5
1,874,863 - QEN71_RS08410 0.36 -1.8
1,874,886 + QEN71_RS08410 0.41 -0.7
1,874,886 + QEN71_RS08410 0.41 -0.1
1,874,886 + QEN71_RS08410 0.41 +0.3
1,874,886 + QEN71_RS08410 0.41 -0.1
1,874,886 + QEN71_RS08410 0.41 -1.6
1,874,886 + QEN71_RS08410 0.41 +0.3
1,874,887 - QEN71_RS08410 0.41 +1.3
1,874,887 - QEN71_RS08410 0.41 -1.4
1,874,887 - QEN71_RS08410 0.41 +0.0
1,874,967 + QEN71_RS08410 0.57 +0.4
1,875,132 + -0.3
1,875,132 + -1.0
1,875,175 - -0.5
1,875,175 - -0.8
1,875,297 - QEN71_RS08415 0.10 +0.6
1,875,297 - QEN71_RS08415 0.10 +0.3
1,875,297 - QEN71_RS08415 0.10 +0.0
1,875,330 + QEN71_RS08415 0.14 -0.4
1,875,404 + QEN71_RS08415 0.22 +2.0
1,875,404 + QEN71_RS08415 0.22 -1.0
1,875,404 + QEN71_RS08415 0.22 +0.7
1,875,446 + QEN71_RS08415 0.26 -0.2
1,875,447 - QEN71_RS08415 0.26 -0.3
1,875,447 - QEN71_RS08415 0.26 -0.2
1,875,520 + QEN71_RS08415 0.34 +0.4

Or see this region's nucleotide sequence