Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08000

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07995 and QEN71_RS08000 are separated by 23 nucleotidesQEN71_RS08000 and QEN71_RS08005 are separated by 213 nucleotides QEN71_RS07995: QEN71_RS07995 - proline racemase family protein, at 1,772,107 to 1,773,114 _RS07995 QEN71_RS08000: QEN71_RS08000 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 1,773,138 to 1,774,055 _RS08000 QEN71_RS08005: QEN71_RS08005 - glucose-6-phosphate dehydrogenase, at 1,774,269 to 1,775,753 _RS08005 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1772.293 kb on + strand, within QEN71_RS07995at 1772.293 kb on + strand, within QEN71_RS07995at 1772.293 kb on + strand, within QEN71_RS07995at 1772.294 kb on - strand, within QEN71_RS07995at 1772.294 kb on - strand, within QEN71_RS07995at 1772.294 kb on - strand, within QEN71_RS07995at 1772.303 kb on - strand, within QEN71_RS07995at 1772.365 kb on + strand, within QEN71_RS07995at 1772.365 kb on + strand, within QEN71_RS07995at 1772.366 kb on - strand, within QEN71_RS07995at 1772.366 kb on - strand, within QEN71_RS07995at 1772.629 kb on + strand, within QEN71_RS07995at 1772.629 kb on + strand, within QEN71_RS07995at 1772.629 kb on + strand, within QEN71_RS07995at 1772.630 kb on - strand, within QEN71_RS07995at 1772.630 kb on - strand, within QEN71_RS07995at 1772.630 kb on - strand, within QEN71_RS07995at 1772.630 kb on - strand, within QEN71_RS07995at 1772.635 kb on + strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.636 kb on - strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.776 kb on + strand, within QEN71_RS07995at 1772.777 kb on - strand, within QEN71_RS07995at 1772.777 kb on - strand, within QEN71_RS07995at 1772.777 kb on - strand, within QEN71_RS07995at 1772.777 kb on - strand, within QEN71_RS07995at 1772.777 kb on - strand, within QEN71_RS07995at 1772.905 kb on + strand, within QEN71_RS07995at 1773.045 kb on + strandat 1773.045 kb on + strandat 1773.045 kb on + strandat 1773.046 kb on - strandat 1773.046 kb on - strandat 1773.094 kb on + strandat 1773.231 kb on + strand, within QEN71_RS08000at 1773.232 kb on - strand, within QEN71_RS08000at 1773.586 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.615 kb on - strand, within QEN71_RS08000at 1773.673 kb on + strand, within QEN71_RS08000at 1773.674 kb on - strand, within QEN71_RS08000at 1773.682 kb on + strand, within QEN71_RS08000at 1773.683 kb on - strand, within QEN71_RS08000at 1773.683 kb on - strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.852 kb on + strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1773.853 kb on - strand, within QEN71_RS08000at 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.171 kb on + strandat 1774.172 kb on - strandat 1774.172 kb on - strandat 1774.172 kb on - strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.198 kb on + strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.199 kb on - strandat 1774.268 kb on + strandat 1774.371 kb on + strandat 1774.371 kb on + strandat 1774.372 kb on - strandat 1774.372 kb on - strandat 1774.412 kb on + strandat 1774.487 kb on + strand, within QEN71_RS08005at 1774.545 kb on + strand, within QEN71_RS08005at 1774.545 kb on + strand, within QEN71_RS08005at 1774.546 kb on - strand, within QEN71_RS08005at 1774.578 kb on + strand, within QEN71_RS08005at 1774.578 kb on + strand, within QEN71_RS08005at 1774.627 kb on - strand, within QEN71_RS08005at 1774.627 kb on - strand, within QEN71_RS08005at 1774.797 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.893 kb on + strand, within QEN71_RS08005at 1774.894 kb on - strand, within QEN71_RS08005at 1774.894 kb on - strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.956 kb on + strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005at 1774.957 kb on - strand, within QEN71_RS08005

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,772,293 + QEN71_RS07995 0.18 -0.6
1,772,293 + QEN71_RS07995 0.18 +0.7
1,772,293 + QEN71_RS07995 0.18 +0.0
1,772,294 - QEN71_RS07995 0.19 +0.6
1,772,294 - QEN71_RS07995 0.19 +0.7
1,772,294 - QEN71_RS07995 0.19 +1.5
1,772,303 - QEN71_RS07995 0.19 -1.8
1,772,365 + QEN71_RS07995 0.26 +2.0
1,772,365 + QEN71_RS07995 0.26 +0.0
1,772,366 - QEN71_RS07995 0.26 +1.2
1,772,366 - QEN71_RS07995 0.26 +0.0
1,772,629 + QEN71_RS07995 0.52 -1.7
1,772,629 + QEN71_RS07995 0.52 -0.4
1,772,629 + QEN71_RS07995 0.52 +0.2
1,772,630 - QEN71_RS07995 0.52 +0.1
1,772,630 - QEN71_RS07995 0.52 +0.1
1,772,630 - QEN71_RS07995 0.52 -0.0
1,772,630 - QEN71_RS07995 0.52 +0.4
1,772,635 + QEN71_RS07995 0.52 -0.2
1,772,636 - QEN71_RS07995 0.52 +1.6
1,772,636 - QEN71_RS07995 0.52 -0.2
1,772,636 - QEN71_RS07995 0.52 +0.4
1,772,636 - QEN71_RS07995 0.52 -0.6
1,772,636 - QEN71_RS07995 0.52 +1.4
1,772,636 - QEN71_RS07995 0.52 +0.6
1,772,776 + QEN71_RS07995 0.66 +0.4
1,772,776 + QEN71_RS07995 0.66 +0.3
1,772,776 + QEN71_RS07995 0.66 +0.1
1,772,776 + QEN71_RS07995 0.66 -0.5
1,772,776 + QEN71_RS07995 0.66 -0.9
1,772,776 + QEN71_RS07995 0.66 +0.3
1,772,776 + QEN71_RS07995 0.66 +1.0
1,772,776 + QEN71_RS07995 0.66 -0.9
1,772,777 - QEN71_RS07995 0.66 +0.1
1,772,777 - QEN71_RS07995 0.66 +0.6
1,772,777 - QEN71_RS07995 0.66 -0.9
1,772,777 - QEN71_RS07995 0.66 -0.4
1,772,777 - QEN71_RS07995 0.66 -0.4
1,772,905 + QEN71_RS07995 0.79 -0.6
1,773,045 + +0.0
1,773,045 + +0.4
1,773,045 + +0.2
1,773,046 - +0.3
1,773,046 - +0.2
1,773,094 + +0.1
1,773,231 + QEN71_RS08000 0.10 -0.6
1,773,232 - QEN71_RS08000 0.10 -0.1
1,773,586 - QEN71_RS08000 0.49 -1.2
1,773,615 - QEN71_RS08000 0.52 -3.0
1,773,615 - QEN71_RS08000 0.52 +0.1
1,773,615 - QEN71_RS08000 0.52 +0.4
1,773,673 + QEN71_RS08000 0.58 -0.9
1,773,674 - QEN71_RS08000 0.58 -0.6
1,773,682 + QEN71_RS08000 0.59 -0.2
1,773,683 - QEN71_RS08000 0.59 +0.1
1,773,683 - QEN71_RS08000 0.59 +1.6
1,773,852 + QEN71_RS08000 0.78 +0.1
1,773,852 + QEN71_RS08000 0.78 -0.6
1,773,852 + QEN71_RS08000 0.78 -0.9
1,773,853 - QEN71_RS08000 0.78 +0.1
1,773,853 - QEN71_RS08000 0.78 -0.8
1,773,853 - QEN71_RS08000 0.78 +0.4
1,773,853 - QEN71_RS08000 0.78 -0.5
1,773,853 - QEN71_RS08000 0.78 -0.1
1,773,853 - QEN71_RS08000 0.78 -1.2
1,774,171 + +1.0
1,774,171 + +1.4
1,774,171 + -1.5
1,774,171 + +1.1
1,774,172 - +0.3
1,774,172 - +0.1
1,774,172 - +0.1
1,774,198 + +0.4
1,774,198 + +0.4
1,774,198 + -0.2
1,774,198 + +1.4
1,774,198 + +0.5
1,774,198 + +0.4
1,774,198 + +0.1
1,774,198 + +1.0
1,774,198 + +0.3
1,774,198 + -0.9
1,774,198 + -0.7
1,774,199 - +0.0
1,774,199 - -1.2
1,774,199 - +0.6
1,774,199 - -0.4
1,774,199 - -0.4
1,774,268 + -0.8
1,774,371 + -1.2
1,774,371 + +0.2
1,774,372 - +1.4
1,774,372 - -0.4
1,774,412 + -3.0
1,774,487 + QEN71_RS08005 0.15 +0.6
1,774,545 + QEN71_RS08005 0.19 -0.4
1,774,545 + QEN71_RS08005 0.19 +0.9
1,774,546 - QEN71_RS08005 0.19 -0.9
1,774,578 + QEN71_RS08005 0.21 -1.4
1,774,578 + QEN71_RS08005 0.21 +0.1
1,774,627 - QEN71_RS08005 0.24 -0.6
1,774,627 - QEN71_RS08005 0.24 +0.4
1,774,797 + QEN71_RS08005 0.36 -0.0
1,774,893 + QEN71_RS08005 0.42 -0.4
1,774,893 + QEN71_RS08005 0.42 +0.3
1,774,893 + QEN71_RS08005 0.42 +2.8
1,774,894 - QEN71_RS08005 0.42 -0.0
1,774,894 - QEN71_RS08005 0.42 -1.5
1,774,956 + QEN71_RS08005 0.46 +2.6
1,774,956 + QEN71_RS08005 0.46 +1.0
1,774,956 + QEN71_RS08005 0.46 +1.0
1,774,956 + QEN71_RS08005 0.46 -0.1
1,774,956 + QEN71_RS08005 0.46 -0.4
1,774,957 - QEN71_RS08005 0.46 +0.4
1,774,957 - QEN71_RS08005 0.46 +0.2
1,774,957 - QEN71_RS08005 0.46 +0.6
1,774,957 - QEN71_RS08005 0.46 +0.8

Or see this region's nucleotide sequence