Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07365

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07360 and QEN71_RS07365 are separated by 244 nucleotidesQEN71_RS07365 and QEN71_RS07370 are separated by 377 nucleotides QEN71_RS07360: QEN71_RS07360 - ribokinase, at 1,634,529 to 1,635,458 _RS07360 QEN71_RS07365: QEN71_RS07365 - methyl-accepting chemotaxis protein, at 1,635,703 to 1,637,439 _RS07365 QEN71_RS07370: QEN71_RS07370 - hydratase, at 1,637,817 to 1,638,578 _RS07370 Position (kb) 1635 1636 1637 1638Strain fitness (log2 ratio) -2 -1 0 1 2at 1635.087 kb on + strand, within QEN71_RS07360at 1635.088 kb on - strand, within QEN71_RS07360at 1635.088 kb on - strand, within QEN71_RS07360at 1635.088 kb on - strand, within QEN71_RS07360at 1635.088 kb on - strand, within QEN71_RS07360at 1635.291 kb on - strand, within QEN71_RS07360at 1635.557 kb on + strandat 1635.557 kb on + strandat 1635.559 kb on + strandat 1635.559 kb on + strandat 1635.559 kb on + strandat 1635.559 kb on + strandat 1635.559 kb on + strandat 1635.560 kb on - strandat 1635.560 kb on - strandat 1635.617 kb on + strandat 1635.617 kb on + strandat 1635.647 kb on + strandat 1635.647 kb on + strandat 1635.648 kb on - strandat 1635.648 kb on - strandat 1635.685 kb on + strandat 1635.685 kb on + strandat 1635.685 kb on + strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.686 kb on - strandat 1635.880 kb on + strand, within QEN71_RS07365at 1635.880 kb on + strand, within QEN71_RS07365at 1635.880 kb on + strand, within QEN71_RS07365at 1635.881 kb on - strand, within QEN71_RS07365at 1635.881 kb on - strand, within QEN71_RS07365at 1635.881 kb on - strand, within QEN71_RS07365at 1636.003 kb on + strand, within QEN71_RS07365at 1636.003 kb on + strand, within QEN71_RS07365at 1636.004 kb on - strand, within QEN71_RS07365at 1636.004 kb on - strand, within QEN71_RS07365at 1636.096 kb on + strand, within QEN71_RS07365at 1636.097 kb on - strand, within QEN71_RS07365at 1636.097 kb on - strand, within QEN71_RS07365at 1636.097 kb on - strand, within QEN71_RS07365at 1636.097 kb on - strand, within QEN71_RS07365at 1636.097 kb on - strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.162 kb on + strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.163 kb on - strand, within QEN71_RS07365at 1636.295 kb on + strand, within QEN71_RS07365at 1636.296 kb on - strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.315 kb on + strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.316 kb on - strand, within QEN71_RS07365at 1636.524 kb on + strand, within QEN71_RS07365at 1636.525 kb on - strand, within QEN71_RS07365at 1636.525 kb on - strand, within QEN71_RS07365at 1636.548 kb on + strand, within QEN71_RS07365at 1636.548 kb on + strand, within QEN71_RS07365at 1636.549 kb on - strand, within QEN71_RS07365at 1637.212 kb on - strand, within QEN71_RS07365at 1637.212 kb on - strand, within QEN71_RS07365at 1637.212 kb on - strand, within QEN71_RS07365at 1637.512 kb on + strandat 1637.512 kb on + strandat 1637.512 kb on + strandat 1637.619 kb on - strandat 1637.619 kb on - strandat 1637.676 kb on + strandat 1637.677 kb on - strandat 1637.708 kb on + strandat 1637.708 kb on + strandat 1637.708 kb on + strandat 1637.708 kb on + strandat 1637.780 kb on + strandat 1637.780 kb on + strandat 1637.780 kb on + strandat 1637.781 kb on - strandat 1637.781 kb on - strandat 1637.922 kb on + strand, within QEN71_RS07370at 1637.922 kb on + strand, within QEN71_RS07370at 1637.922 kb on + strand, within QEN71_RS07370at 1637.922 kb on + strand, within QEN71_RS07370at 1637.922 kb on + strand, within QEN71_RS07370at 1637.923 kb on - strand, within QEN71_RS07370at 1637.923 kb on - strand, within QEN71_RS07370at 1637.923 kb on - strand, within QEN71_RS07370at 1638.144 kb on + strand, within QEN71_RS07370at 1638.144 kb on + strand, within QEN71_RS07370at 1638.144 kb on + strand, within QEN71_RS07370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,635,087 + QEN71_RS07360 0.60 +0.4
1,635,088 - QEN71_RS07360 0.60 +0.9
1,635,088 - QEN71_RS07360 0.60 +0.2
1,635,088 - QEN71_RS07360 0.60 +0.2
1,635,088 - QEN71_RS07360 0.60 -0.3
1,635,291 - QEN71_RS07360 0.82 +0.6
1,635,557 + +0.1
1,635,557 + +0.4
1,635,559 + -0.2
1,635,559 + +0.6
1,635,559 + +0.0
1,635,559 + -0.5
1,635,559 + +0.3
1,635,560 - +0.5
1,635,560 - +2.3
1,635,617 + -1.1
1,635,617 + +0.2
1,635,647 + -0.2
1,635,647 + -0.3
1,635,648 - -0.4
1,635,648 - +0.4
1,635,685 + -0.9
1,635,685 + -0.9
1,635,685 + +0.2
1,635,686 - +0.2
1,635,686 - +0.3
1,635,686 - -1.6
1,635,686 - +0.9
1,635,686 - +0.2
1,635,686 - -0.3
1,635,686 - +0.1
1,635,880 + QEN71_RS07365 0.10 -1.5
1,635,880 + QEN71_RS07365 0.10 -1.0
1,635,880 + QEN71_RS07365 0.10 -0.0
1,635,881 - QEN71_RS07365 0.10 -1.3
1,635,881 - QEN71_RS07365 0.10 -0.6
1,635,881 - QEN71_RS07365 0.10 -0.2
1,636,003 + QEN71_RS07365 0.17 +0.8
1,636,003 + QEN71_RS07365 0.17 +0.7
1,636,004 - QEN71_RS07365 0.17 -0.1
1,636,004 - QEN71_RS07365 0.17 +0.2
1,636,096 + QEN71_RS07365 0.23 +2.0
1,636,097 - QEN71_RS07365 0.23 +0.5
1,636,097 - QEN71_RS07365 0.23 +0.7
1,636,097 - QEN71_RS07365 0.23 -0.4
1,636,097 - QEN71_RS07365 0.23 +2.1
1,636,097 - QEN71_RS07365 0.23 -0.0
1,636,162 + QEN71_RS07365 0.26 -0.6
1,636,162 + QEN71_RS07365 0.26 +0.5
1,636,162 + QEN71_RS07365 0.26 -0.1
1,636,162 + QEN71_RS07365 0.26 +1.4
1,636,162 + QEN71_RS07365 0.26 +0.5
1,636,162 + QEN71_RS07365 0.26 +0.1
1,636,162 + QEN71_RS07365 0.26 +0.5
1,636,162 + QEN71_RS07365 0.26 -0.3
1,636,162 + QEN71_RS07365 0.26 -0.2
1,636,163 - QEN71_RS07365 0.26 +0.4
1,636,163 - QEN71_RS07365 0.26 +0.2
1,636,163 - QEN71_RS07365 0.26 +2.5
1,636,163 - QEN71_RS07365 0.26 -0.5
1,636,163 - QEN71_RS07365 0.26 +0.4
1,636,163 - QEN71_RS07365 0.26 +0.3
1,636,163 - QEN71_RS07365 0.26 -0.1
1,636,295 + QEN71_RS07365 0.34 -0.7
1,636,296 - QEN71_RS07365 0.34 -0.7
1,636,315 + QEN71_RS07365 0.35 -0.2
1,636,315 + QEN71_RS07365 0.35 +0.2
1,636,315 + QEN71_RS07365 0.35 -0.3
1,636,315 + QEN71_RS07365 0.35 -0.6
1,636,315 + QEN71_RS07365 0.35 +0.1
1,636,315 + QEN71_RS07365 0.35 -1.9
1,636,315 + QEN71_RS07365 0.35 -0.0
1,636,316 - QEN71_RS07365 0.35 -0.1
1,636,316 - QEN71_RS07365 0.35 -0.2
1,636,316 - QEN71_RS07365 0.35 +0.6
1,636,316 - QEN71_RS07365 0.35 -0.6
1,636,316 - QEN71_RS07365 0.35 +0.5
1,636,316 - QEN71_RS07365 0.35 -1.1
1,636,316 - QEN71_RS07365 0.35 -0.4
1,636,316 - QEN71_RS07365 0.35 -0.4
1,636,316 - QEN71_RS07365 0.35 -0.5
1,636,524 + QEN71_RS07365 0.47 +0.1
1,636,525 - QEN71_RS07365 0.47 -0.6
1,636,525 - QEN71_RS07365 0.47 -0.2
1,636,548 + QEN71_RS07365 0.49 -0.4
1,636,548 + QEN71_RS07365 0.49 +0.3
1,636,549 - QEN71_RS07365 0.49 -1.2
1,637,212 - QEN71_RS07365 0.87 -0.2
1,637,212 - QEN71_RS07365 0.87 -0.1
1,637,212 - QEN71_RS07365 0.87 +0.8
1,637,512 + +0.4
1,637,512 + -0.4
1,637,512 + +0.8
1,637,619 - +0.2
1,637,619 - -0.1
1,637,676 + -0.5
1,637,677 - +0.0
1,637,708 + -1.8
1,637,708 + -1.1
1,637,708 + -0.0
1,637,708 + +1.1
1,637,780 + -0.4
1,637,780 + +0.6
1,637,780 + -0.1
1,637,781 - -0.6
1,637,781 - +0.2
1,637,922 + QEN71_RS07370 0.14 +0.2
1,637,922 + QEN71_RS07370 0.14 +0.0
1,637,922 + QEN71_RS07370 0.14 +1.7
1,637,922 + QEN71_RS07370 0.14 +0.3
1,637,922 + QEN71_RS07370 0.14 -1.1
1,637,923 - QEN71_RS07370 0.14 -0.1
1,637,923 - QEN71_RS07370 0.14 +0.5
1,637,923 - QEN71_RS07370 0.14 -0.2
1,638,144 + QEN71_RS07370 0.43 +1.3
1,638,144 + QEN71_RS07370 0.43 -0.2
1,638,144 + QEN71_RS07370 0.43 -2.7

Or see this region's nucleotide sequence