Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06130

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06125 and QEN71_RS06130 are separated by 246 nucleotidesQEN71_RS06130 and QEN71_RS06135 are separated by 47 nucleotides QEN71_RS06125: QEN71_RS06125 - tetratricopeptide repeat protein, at 1,360,639 to 1,361,439 _RS06125 QEN71_RS06130: QEN71_RS06130 - cysteine--tRNA ligase, at 1,361,686 to 1,363,083 _RS06130 QEN71_RS06135: QEN71_RS06135 - DNA-3-methyladenine glycosylase, at 1,363,131 to 1,364,192 _RS06135 Position (kb) 1361 1362 1363 1364Strain fitness (log2 ratio) -1 0 1at 1360.742 kb on + strand, within QEN71_RS06125at 1360.743 kb on - strand, within QEN71_RS06125at 1360.743 kb on - strand, within QEN71_RS06125at 1360.743 kb on - strand, within QEN71_RS06125at 1360.743 kb on - strand, within QEN71_RS06125at 1360.743 kb on - strand, within QEN71_RS06125at 1361.459 kb on - strandat 1361.475 kb on + strandat 1361.475 kb on + strandat 1361.475 kb on + strandat 1361.475 kb on + strandat 1361.475 kb on + strandat 1361.641 kb on + strandat 1361.641 kb on + strandat 1361.685 kb on + strandat 1361.685 kb on + strandat 1361.685 kb on + strandat 1361.685 kb on + strandat 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.094 kb on + strandat 1363.157 kb on + strandat 1363.195 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,360,742 + QEN71_RS06125 0.13 +0.3
1,360,743 - QEN71_RS06125 0.13 +0.6
1,360,743 - QEN71_RS06125 0.13 +0.4
1,360,743 - QEN71_RS06125 0.13 +1.3
1,360,743 - QEN71_RS06125 0.13 +0.5
1,360,743 - QEN71_RS06125 0.13 +0.1
1,361,459 - +0.4
1,361,475 + +0.4
1,361,475 + -0.3
1,361,475 + -1.6
1,361,475 + -0.1
1,361,475 + -0.0
1,361,641 + +0.3
1,361,641 + +0.3
1,361,685 + -0.2
1,361,685 + +0.6
1,361,685 + -0.4
1,361,685 + +0.1
1,363,094 + -1.1
1,363,094 + +0.9
1,363,094 + +1.6
1,363,094 + -0.3
1,363,157 + +1.3
1,363,195 + +0.8

Or see this region's nucleotide sequence