Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00750

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00740 and QEN71_RS00745 are separated by 636 nucleotidesQEN71_RS00745 and QEN71_RS00750 overlap by 4 nucleotidesQEN71_RS00750 and QEN71_RS00755 are separated by 0 nucleotidesQEN71_RS00755 and QEN71_RS00760 are separated by 113 nucleotides QEN71_RS00740: QEN71_RS00740 - IS21 family transposase, at 167,594 to 169,117 _RS00740 QEN71_RS00745: QEN71_RS00745 - hypothetical protein, at 169,754 to 169,999 _RS00745 QEN71_RS00750: QEN71_RS00750 - hypothetical protein, at 169,996 to 170,217 _RS00750 QEN71_RS00755: QEN71_RS00755 - hypothetical protein, at 170,218 to 170,481 _RS00755 QEN71_RS00760: QEN71_RS00760 - hypothetical protein, at 170,595 to 171,218 _RS00760 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1 2at 169.366 kb on + strandat 169.366 kb on + strandat 169.425 kb on + strandat 169.425 kb on + strandat 169.425 kb on + strandat 169.426 kb on - strandat 169.426 kb on - strandat 169.432 kb on + strandat 169.432 kb on + strandat 169.433 kb on - strandat 169.433 kb on - strandat 169.504 kb on + strandat 169.504 kb on + strandat 169.504 kb on + strandat 169.505 kb on - strandat 169.505 kb on - strandat 169.505 kb on - strandat 169.505 kb on - strandat 169.528 kb on - strandat 169.528 kb on - strandat 169.584 kb on + strandat 169.598 kb on - strandat 169.598 kb on - strandat 169.695 kb on + strandat 169.695 kb on + strandat 169.695 kb on + strandat 169.698 kb on + strandat 169.698 kb on + strandat 169.698 kb on + strandat 169.699 kb on - strandat 169.699 kb on - strandat 169.776 kb on - strandat 169.778 kb on + strandat 169.778 kb on + strandat 169.778 kb on + strandat 169.779 kb on - strand, within QEN71_RS00745at 169.779 kb on - strand, within QEN71_RS00745at 169.779 kb on - strand, within QEN71_RS00745at 169.779 kb on - strand, within QEN71_RS00745at 169.779 kb on - strand, within QEN71_RS00745at 169.842 kb on + strand, within QEN71_RS00745at 169.842 kb on + strand, within QEN71_RS00745at 169.843 kb on - strand, within QEN71_RS00745at 169.843 kb on - strand, within QEN71_RS00745at 169.843 kb on - strand, within QEN71_RS00745at 169.843 kb on - strand, within QEN71_RS00745at 170.064 kb on + strand, within QEN71_RS00750at 170.064 kb on + strand, within QEN71_RS00750at 170.065 kb on - strand, within QEN71_RS00750at 170.065 kb on - strand, within QEN71_RS00750at 170.121 kb on + strand, within QEN71_RS00750at 170.121 kb on + strand, within QEN71_RS00750at 170.121 kb on + strand, within QEN71_RS00750at 170.122 kb on - strand, within QEN71_RS00750at 170.122 kb on - strand, within QEN71_RS00750at 170.215 kb on + strandat 170.215 kb on + strandat 170.215 kb on + strandat 170.215 kb on + strandat 170.216 kb on - strandat 170.216 kb on - strandat 170.219 kb on + strandat 170.220 kb on - strandat 170.292 kb on - strand, within QEN71_RS00755at 170.292 kb on - strand, within QEN71_RS00755at 170.292 kb on - strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.314 kb on + strand, within QEN71_RS00755at 170.315 kb on - strand, within QEN71_RS00755at 170.315 kb on - strand, within QEN71_RS00755at 170.315 kb on - strand, within QEN71_RS00755at 170.315 kb on - strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.347 kb on + strand, within QEN71_RS00755at 170.348 kb on - strand, within QEN71_RS00755at 170.348 kb on - strand, within QEN71_RS00755at 170.348 kb on - strand, within QEN71_RS00755at 170.348 kb on - strand, within QEN71_RS00755at 170.400 kb on + strand, within QEN71_RS00755at 170.400 kb on + strand, within QEN71_RS00755at 170.401 kb on - strand, within QEN71_RS00755at 170.401 kb on - strand, within QEN71_RS00755at 170.438 kb on - strand, within QEN71_RS00755at 170.470 kb on + strandat 170.470 kb on + strandat 170.496 kb on - strandat 170.496 kb on - strandat 170.600 kb on + strandat 170.600 kb on + strandat 170.601 kb on - strandat 170.601 kb on - strandat 170.660 kb on + strand, within QEN71_RS00760at 170.678 kb on + strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.679 kb on - strand, within QEN71_RS00760at 170.687 kb on + strand, within QEN71_RS00760at 170.687 kb on + strand, within QEN71_RS00760at 170.688 kb on - strand, within QEN71_RS00760at 170.688 kb on - strand, within QEN71_RS00760at 170.688 kb on - strand, within QEN71_RS00760at 170.730 kb on + strand, within QEN71_RS00760at 170.731 kb on - strand, within QEN71_RS00760at 170.813 kb on + strand, within QEN71_RS00760at 170.813 kb on + strand, within QEN71_RS00760at 170.813 kb on + strand, within QEN71_RS00760at 170.813 kb on + strand, within QEN71_RS00760at 170.814 kb on - strand, within QEN71_RS00760at 170.814 kb on - strand, within QEN71_RS00760at 170.915 kb on - strand, within QEN71_RS00760at 170.920 kb on + strand, within QEN71_RS00760at 170.920 kb on + strand, within QEN71_RS00760at 170.920 kb on + strand, within QEN71_RS00760at 170.920 kb on + strand, within QEN71_RS00760at 170.921 kb on - strand, within QEN71_RS00760at 170.921 kb on - strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.969 kb on + strand, within QEN71_RS00760at 170.970 kb on - strand, within QEN71_RS00760at 170.970 kb on - strand, within QEN71_RS00760at 170.970 kb on - strand, within QEN71_RS00760at 170.970 kb on - strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.983 kb on + strand, within QEN71_RS00760at 170.984 kb on - strand, within QEN71_RS00760at 171.025 kb on + strand, within QEN71_RS00760at 171.025 kb on + strand, within QEN71_RS00760at 171.026 kb on - strand, within QEN71_RS00760at 171.026 kb on - strand, within QEN71_RS00760at 171.027 kb on + strand, within QEN71_RS00760at 171.028 kb on - strand, within QEN71_RS00760at 171.028 kb on - strand, within QEN71_RS00760at 171.028 kb on - strand, within QEN71_RS00760at 171.028 kb on - strand, within QEN71_RS00760at 171.028 kb on - strand, within QEN71_RS00760at 171.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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169,366 + -0.3
169,366 + -0.9
169,425 + +0.2
169,425 + -0.9
169,425 + -0.4
169,426 - +2.6
169,426 - -0.7
169,432 + +0.0
169,432 + +1.7
169,433 - +0.5
169,433 - -0.2
169,504 + +0.0
169,504 + -1.3
169,504 + +1.3
169,505 - -1.0
169,505 - -0.8
169,505 - +0.4
169,505 - +0.2
169,528 - -0.7
169,528 - -0.6
169,584 + +0.3
169,598 - -0.3
169,598 - +0.3
169,695 + +0.5
169,695 + -0.9
169,695 + -0.6
169,698 + -0.5
169,698 + -0.2
169,698 + +0.0
169,699 - -0.4
169,699 - -1.3
169,776 - -1.0
169,778 + +0.1
169,778 + +0.5
169,778 + -0.8
169,779 - QEN71_RS00745 0.10 +0.3
169,779 - QEN71_RS00745 0.10 -0.3
169,779 - QEN71_RS00745 0.10 +0.1
169,779 - QEN71_RS00745 0.10 -0.0
169,779 - QEN71_RS00745 0.10 -0.7
169,842 + QEN71_RS00745 0.36 -1.1
169,842 + QEN71_RS00745 0.36 +0.1
169,843 - QEN71_RS00745 0.36 +1.9
169,843 - QEN71_RS00745 0.36 -0.4
169,843 - QEN71_RS00745 0.36 -0.2
169,843 - QEN71_RS00745 0.36 +0.2
170,064 + QEN71_RS00750 0.31 -0.3
170,064 + QEN71_RS00750 0.31 -2.5
170,065 - QEN71_RS00750 0.31 +0.3
170,065 - QEN71_RS00750 0.31 -1.1
170,121 + QEN71_RS00750 0.56 -2.5
170,121 + QEN71_RS00750 0.56 +0.1
170,121 + QEN71_RS00750 0.56 -0.3
170,122 - QEN71_RS00750 0.57 -0.9
170,122 - QEN71_RS00750 0.57 +0.9
170,215 + -0.7
170,215 + -0.1
170,215 + -0.4
170,215 + +0.6
170,216 - -0.8
170,216 - +1.4
170,219 + -2.4
170,220 - -0.4
170,292 - QEN71_RS00755 0.28 +0.9
170,292 - QEN71_RS00755 0.28 -0.3
170,292 - QEN71_RS00755 0.28 -1.3
170,314 + QEN71_RS00755 0.36 -0.6
170,314 + QEN71_RS00755 0.36 -0.0
170,314 + QEN71_RS00755 0.36 +0.1
170,314 + QEN71_RS00755 0.36 +0.3
170,314 + QEN71_RS00755 0.36 +0.0
170,314 + QEN71_RS00755 0.36 -1.3
170,314 + QEN71_RS00755 0.36 -0.6
170,315 - QEN71_RS00755 0.37 +0.0
170,315 - QEN71_RS00755 0.37 +0.5
170,315 - QEN71_RS00755 0.37 +1.3
170,315 - QEN71_RS00755 0.37 -0.0
170,347 + QEN71_RS00755 0.49 +0.1
170,347 + QEN71_RS00755 0.49 +0.8
170,347 + QEN71_RS00755 0.49 -0.2
170,347 + QEN71_RS00755 0.49 +0.6
170,347 + QEN71_RS00755 0.49 +0.2
170,347 + QEN71_RS00755 0.49 +0.1
170,347 + QEN71_RS00755 0.49 +1.0
170,348 - QEN71_RS00755 0.49 -1.1
170,348 - QEN71_RS00755 0.49 +2.2
170,348 - QEN71_RS00755 0.49 -1.1
170,348 - QEN71_RS00755 0.49 +0.9
170,400 + QEN71_RS00755 0.69 +0.3
170,400 + QEN71_RS00755 0.69 +1.7
170,401 - QEN71_RS00755 0.69 -0.1
170,401 - QEN71_RS00755 0.69 -0.4
170,438 - QEN71_RS00755 0.83 +0.2
170,470 + +2.2
170,470 + -0.4
170,496 - -0.5
170,496 - -0.3
170,600 + +0.4
170,600 + -0.4
170,601 - +1.5
170,601 - -1.9
170,660 + QEN71_RS00760 0.10 -0.1
170,678 + QEN71_RS00760 0.13 -1.5
170,679 - QEN71_RS00760 0.13 -0.3
170,679 - QEN71_RS00760 0.13 -1.2
170,679 - QEN71_RS00760 0.13 +0.4
170,679 - QEN71_RS00760 0.13 +0.2
170,679 - QEN71_RS00760 0.13 -0.4
170,679 - QEN71_RS00760 0.13 -0.9
170,687 + QEN71_RS00760 0.15 +0.3
170,687 + QEN71_RS00760 0.15 -0.4
170,688 - QEN71_RS00760 0.15 -0.9
170,688 - QEN71_RS00760 0.15 +0.4
170,688 - QEN71_RS00760 0.15 +0.7
170,730 + QEN71_RS00760 0.22 -0.1
170,731 - QEN71_RS00760 0.22 +0.5
170,813 + QEN71_RS00760 0.35 +0.0
170,813 + QEN71_RS00760 0.35 -0.1
170,813 + QEN71_RS00760 0.35 -1.3
170,813 + QEN71_RS00760 0.35 -1.1
170,814 - QEN71_RS00760 0.35 +0.9
170,814 - QEN71_RS00760 0.35 -0.9
170,915 - QEN71_RS00760 0.51 -0.4
170,920 + QEN71_RS00760 0.52 +0.1
170,920 + QEN71_RS00760 0.52 +0.8
170,920 + QEN71_RS00760 0.52 -0.1
170,920 + QEN71_RS00760 0.52 +2.1
170,921 - QEN71_RS00760 0.52 +0.5
170,921 - QEN71_RS00760 0.52 -0.4
170,969 + QEN71_RS00760 0.60 +0.6
170,969 + QEN71_RS00760 0.60 +0.6
170,969 + QEN71_RS00760 0.60 +0.4
170,969 + QEN71_RS00760 0.60 -0.2
170,969 + QEN71_RS00760 0.60 +0.8
170,969 + QEN71_RS00760 0.60 +0.8
170,970 - QEN71_RS00760 0.60 +0.1
170,970 - QEN71_RS00760 0.60 -2.1
170,970 - QEN71_RS00760 0.60 -0.2
170,970 - QEN71_RS00760 0.60 -0.7
170,983 + QEN71_RS00760 0.62 -0.0
170,983 + QEN71_RS00760 0.62 +1.1
170,983 + QEN71_RS00760 0.62 +0.2
170,983 + QEN71_RS00760 0.62 +0.4
170,983 + QEN71_RS00760 0.62 +0.9
170,983 + QEN71_RS00760 0.62 -1.0
170,984 - QEN71_RS00760 0.62 -0.7
171,025 + QEN71_RS00760 0.69 -0.9
171,025 + QEN71_RS00760 0.69 +1.1
171,026 - QEN71_RS00760 0.69 +0.0
171,026 - QEN71_RS00760 0.69 +0.5
171,027 + QEN71_RS00760 0.69 -0.1
171,028 - QEN71_RS00760 0.69 +0.3
171,028 - QEN71_RS00760 0.69 +0.9
171,028 - QEN71_RS00760 0.69 -0.5
171,028 - QEN71_RS00760 0.69 -0.1
171,028 - QEN71_RS00760 0.69 -0.2
171,208 - +0.6

Or see this region's nucleotide sequence