Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03391

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
3,792,158	+		MIT1002_03389	0.87	-3.5
3,792,166	-		MIT1002_03389	0.87	-1.4
3,792,176	+		MIT1002_03389	0.88	+1.0
3,792,188	+		MIT1002_03389	0.89	+0.1
3,792,188	+		MIT1002_03389	0.89	-0.3
3,792,188	+		MIT1002_03389	0.89	-2.4
3,792,196	-				-1.1
3,792,200	+				+0.1
3,792,201	+				-0.1
3,792,201	+				-0.8
3,792,201	+				-0.3
3,792,210	+				+0.1
3,792,264	+				+1.4
3,792,301	+				+1.1
3,792,301	+				-0.5
3,792,301	+				-0.8
3,792,301	+				+0.1
3,792,301	+				+1.2
3,792,301	+				+1.3
3,792,301	+				-0.5
3,792,301	+				-0.8
3,792,301	+				+0.7
3,792,305	-				-1.3
3,792,309	-				+0.1
3,792,309	-				-0.3
3,792,309	-				+1.6
3,792,309	-				+1.3
3,792,309	-				-0.2
3,792,309	-				-0.2
3,792,309	-				-0.6
3,792,309	-				-0.0
3,792,309	-				+1.8
3,792,309	-				-1.5
3,792,309	-				-1.0
3,792,309	-				+0.7
3,792,309	-				-0.2
3,792,309	-				-1.0
3,792,309	-				-0.0
3,792,309	-				-0.6
3,792,345	-				-0.0
3,792,380	+				-1.0
3,792,388	-				+1.1
3,792,408	-		MIT1002_03390	0.12	+0.3
3,792,451	+		MIT1002_03390	0.18	+1.9
3,792,451	+		MIT1002_03390	0.18	-0.2
3,792,451	+		MIT1002_03390	0.18	+0.0
3,792,459	-		MIT1002_03390	0.19	+0.6
3,792,459	-		MIT1002_03390	0.19	-0.8
3,792,459	-		MIT1002_03390	0.19	+0.5
3,792,510	+		MIT1002_03390	0.27	+0.0
3,792,548	-		MIT1002_03390	0.32	-0.7
3,792,553	+		MIT1002_03390	0.33	+1.7
3,792,595	+		MIT1002_03390	0.39	+0.2
3,792,691	+		MIT1002_03390	0.54	+2.2
3,792,699	-		MIT1002_03390	0.55	+1.3
3,792,699	-		MIT1002_03390	0.55	+0.4
3,792,699	-		MIT1002_03390	0.55	-0.2
3,792,737	-		MIT1002_03390	0.61	-0.7
3,792,745	+		MIT1002_03390	0.62	+0.5
3,792,753	+		MIT1002_03390	0.63	+0.2
3,792,753	-		MIT1002_03390	0.63	-1.5
3,792,755	+		MIT1002_03390	0.63	+0.2
3,792,759	+		MIT1002_03390	0.64	+0.6
3,792,759	+		MIT1002_03390	0.64	-0.3
3,792,767	-		MIT1002_03390	0.65	+0.1
3,792,767	-		MIT1002_03390	0.65	-0.8
3,792,777	-		MIT1002_03390	0.67	+0.9
3,792,846	-		MIT1002_03390	0.77	-1.5
3,792,849	+		MIT1002_03390	0.77	-0.3
3,792,905	-		MIT1002_03390	0.86	-0.3
3,792,906	+		MIT1002_03390	0.86	-0.1
3,793,201	+				-0.6
3,793,210	-				-0.1
3,793,212	+				-0.1
3,793,220	-				-1.4
3,793,223	-				+0.6
3,793,223	-				-2.3
3,793,269	-		MIT1002_03391	0.15	+2.5
3,793,285	+		MIT1002_03391	0.17	-0.3
3,793,292	+		MIT1002_03391	0.17	+0.5
3,793,292	+		MIT1002_03391	0.17	-1.2
3,793,292	+		MIT1002_03391	0.17	+0.4
3,793,292	+		MIT1002_03391	0.17	+1.1
3,793,292	+		MIT1002_03391	0.17	-0.3
3,793,292	+		MIT1002_03391	0.17	+0.5
3,793,292	+		MIT1002_03391	0.17	-0.0
3,793,294	+		MIT1002_03391	0.18	-0.5
3,793,294	+		MIT1002_03391	0.18	-0.2
3,793,300	-		MIT1002_03391	0.18	+2.1
3,793,300	-		MIT1002_03391	0.18	+0.2
3,793,300	-		MIT1002_03391	0.18	-0.1
3,793,300	-		MIT1002_03391	0.18	+0.5
3,793,300	-		MIT1002_03391	0.18	-1.1
3,793,300	-		MIT1002_03391	0.18	+1.3
3,793,302	-		MIT1002_03391	0.18	-0.2
3,793,518	-		MIT1002_03391	0.43	+1.4
3,793,520	+		MIT1002_03391	0.43	+0.3
3,793,530	-		MIT1002_03391	0.45	+0.3
3,793,533	+		MIT1002_03391	0.45	+0.4
3,793,572	-		MIT1002_03391	0.49	-0.3
3,793,573	-		MIT1002_03391	0.49	+0.3
3,793,753	+		MIT1002_03391	0.70	-1.3
3,793,761	-		MIT1002_03391	0.71	+0.3
3,793,761	-		MIT1002_03391	0.71	+0.3
3,793,786	-		MIT1002_03391	0.74	-0.3
3,794,020	-				-0.3
3,794,179	-		MIT1002_03392	0.18	+0.3
3,794,207	-		MIT1002_03392	0.22	+0.5
3,794,207	-		MIT1002_03392	0.22	-0.2
3,794,287	-		MIT1002_03392	0.31	+0.1
3,794,297	+		MIT1002_03392	0.32	-0.4
3,794,299	+		MIT1002_03392	0.32	-0.0
3,794,338	+		MIT1002_03392	0.36	-0.2
3,794,433	+		MIT1002_03392	0.47	+1.2
3,794,433	+		MIT1002_03392	0.47	+1.0
3,794,433	+		MIT1002_03392	0.47	+0.0
3,794,544	+		MIT1002_03392	0.59	-0.4
3,794,555	+		MIT1002_03392	0.61	+0.1
3,794,632	-		MIT1002_03392	0.69	+0.6
3,794,655	+		MIT1002_03392	0.72	+0.5
3,794,663	-		MIT1002_03392	0.73	-0.7
3,794,669	-		MIT1002_03392	0.73	+0.5
3,794,686	+		MIT1002_03392	0.75	+1.8
3,794,687	-		MIT1002_03392	0.75	+0.4
3,794,693	-		MIT1002_03392	0.76	+0.3
3,794,694	-		MIT1002_03392	0.76	+1.0
3,794,722	+		MIT1002_03392	0.79	+0.2
3,794,826	-				+0.4
3,794,826	-				+0.9
3,794,828	+				+1.7
3,794,836	-				-1.4
3,794,879	-				+0.2
3,794,909	-				+0.8
3,794,971	+				+0.5
3,794,972	-				+1.9
3,794,998	-				+0.1
3,795,007	-				-0.3
3,795,012	-				+2.1