Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02054

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
2,311,822	-		MIT1002_02053	0.30	-0.6
2,311,895	-		MIT1002_02053	0.36	+0.5
2,311,936	-		MIT1002_02053	0.39	+1.1
2,311,947	-		MIT1002_02053	0.40	+0.2
2,311,970	+		MIT1002_02053	0.41	+0.9
2,311,970	+		MIT1002_02053	0.41	-0.8
2,311,978	-		MIT1002_02053	0.42	-0.2
2,311,978	-		MIT1002_02053	0.42	+0.4
2,311,978	-		MIT1002_02053	0.42	-0.4
2,311,980	+		MIT1002_02053	0.42	-0.1
2,311,990	-		MIT1002_02053	0.43	-1.1
2,312,013	-		MIT1002_02053	0.45	-0.8
2,312,050	+		MIT1002_02053	0.47	-0.2
2,312,102	-		MIT1002_02053	0.51	-0.1
2,312,102	-		MIT1002_02053	0.51	+0.8
2,312,107	+		MIT1002_02053	0.52	-0.4
2,312,139	-		MIT1002_02053	0.54	+1.3
2,312,164	+		MIT1002_02053	0.56	+0.1
2,312,164	+		MIT1002_02053	0.56	+1.0
2,312,172	-		MIT1002_02053	0.57	+1.1
2,312,172	-		MIT1002_02053	0.57	+0.5
2,312,172	-		MIT1002_02053	0.57	-0.1
2,312,172	-		MIT1002_02053	0.57	-0.2
2,312,191	+		MIT1002_02053	0.58	-0.6
2,312,252	-		MIT1002_02053	0.63	+1.8
2,312,252	-		MIT1002_02053	0.63	-0.1
2,312,263	+		MIT1002_02053	0.64	-0.3
2,312,273	+		MIT1002_02053	0.64	-0.0
2,312,273	+		MIT1002_02053	0.64	+0.0
2,312,273	+		MIT1002_02053	0.64	+1.8
2,312,279	+		MIT1002_02053	0.65	+0.4
2,312,299	-		MIT1002_02053	0.66	-1.9
2,312,306	+		MIT1002_02053	0.67	-0.1
2,312,306	+		MIT1002_02053	0.67	+0.3
2,312,391	+		MIT1002_02053	0.73	+0.2
2,312,399	-		MIT1002_02053	0.74	+0.8
2,312,411	+		MIT1002_02053	0.75	+0.2
2,312,411	+		MIT1002_02053	0.75	-0.1
2,312,419	-		MIT1002_02053	0.76	+0.5
2,312,419	-		MIT1002_02053	0.76	+0.9
2,312,455	-		MIT1002_02053	0.78	+0.4
2,312,460	-		MIT1002_02053	0.79	+0.3
2,312,517	+		MIT1002_02053	0.83	-0.5
2,312,524	+		MIT1002_02053	0.84	+0.5
2,312,525	-		MIT1002_02053	0.84	+0.1
2,312,586	-		MIT1002_02053	0.88	+0.7
2,312,586	-		MIT1002_02053	0.88	+1.3
2,312,586	-		MIT1002_02053	0.88	-0.2
2,312,716	+				+0.8
2,312,724	-				-0.2
2,312,724	-				+1.2
2,312,732	+				+0.7
2,312,739	+				-0.2
2,312,739	+				-0.1
2,312,739	+				-0.1
2,312,739	+				+0.7
2,312,739	+				+0.7
2,312,739	+				+0.0
2,312,747	-				+0.4
2,312,747	-				-0.7
2,312,747	-				+0.7
2,312,887	+				+1.3
2,312,943	+				-0.3
2,312,951	-				+0.2
2,312,951	-				-0.8
2,312,976	-				-1.8
2,313,045	-				-1.9
2,313,058	+				-1.2
2,313,094	+		MIT1002_02054	0.11	-0.5
2,313,134	-		MIT1002_02054	0.12	-1.0
2,313,155	+		MIT1002_02054	0.13	-0.8
2,313,163	-		MIT1002_02054	0.13	+0.3
2,313,215	+		MIT1002_02054	0.14	+0.3
2,313,226	-		MIT1002_02054	0.15	+0.6
2,313,231	-		MIT1002_02054	0.15	+0.2
2,313,231	-		MIT1002_02054	0.15	+2.2
2,313,233	+		MIT1002_02054	0.15	+1.8
2,313,233	+		MIT1002_02054	0.15	-0.3
2,313,270	+		MIT1002_02054	0.16	-1.1
2,313,346	-		MIT1002_02054	0.18	-1.0
2,313,377	-		MIT1002_02054	0.19	-1.7
2,313,377	-		MIT1002_02054	0.19	-1.2
2,313,385	+		MIT1002_02054	0.20	+0.3
2,313,404	-		MIT1002_02054	0.20	+0.4
2,313,427	-		MIT1002_02054	0.21	-1.6
2,313,488	+		MIT1002_02054	0.23	-2.0
2,313,488	+		MIT1002_02054	0.23	+0.8
2,313,493	+		MIT1002_02054	0.23	+0.2
2,313,496	-		MIT1002_02054	0.23	+0.9
2,313,605	-		MIT1002_02054	0.27	-0.1
2,313,704	+		MIT1002_02054	0.30	+0.6
2,313,756	+		MIT1002_02054	0.31	+1.0
2,313,883	+		MIT1002_02054	0.35	+0.0
2,313,897	-		MIT1002_02054	0.36	-0.7
2,313,920	+		MIT1002_02054	0.36	+0.2
2,313,928	-		MIT1002_02054	0.37	-1.6
2,313,933	-		MIT1002_02054	0.37	+2.6
2,313,934	+		MIT1002_02054	0.37	+0.4
2,313,969	-		MIT1002_02054	0.38	-2.3
2,313,980	+		MIT1002_02054	0.38	-0.2
2,313,988	-		MIT1002_02054	0.39	-1.9
2,313,988	-		MIT1002_02054	0.39	+1.2
2,313,988	-		MIT1002_02054	0.39	+0.4
2,314,011	-		MIT1002_02054	0.39	-0.2
2,314,013	+		MIT1002_02054	0.39	+0.2
2,314,013	+		MIT1002_02054	0.39	+0.4
2,314,021	-		MIT1002_02054	0.40	-0.2
2,314,026	-		MIT1002_02054	0.40	+0.7
2,314,053	-		MIT1002_02054	0.41	-0.3
2,314,053	-		MIT1002_02054	0.41	-1.1
2,314,093	+		MIT1002_02054	0.42	-0.3
2,314,103	+		MIT1002_02054	0.42	+0.2
2,314,165	+		MIT1002_02054	0.44	-1.0
2,314,243	-		MIT1002_02054	0.47	+0.7
2,314,260	+		MIT1002_02054	0.47	+0.7
2,314,280	+		MIT1002_02054	0.48	-0.0
2,314,280	+		MIT1002_02054	0.48	-2.3
2,314,297	-		MIT1002_02054	0.48	+0.6
2,314,297	-		MIT1002_02054	0.48	+2.3
2,314,333	+		MIT1002_02054	0.49	-0.1
2,314,369	-		MIT1002_02054	0.51	+1.4
2,314,407	-		MIT1002_02054	0.52	-1.4
2,314,416	+		MIT1002_02054	0.52	-0.2
2,314,440	+		MIT1002_02054	0.53	+0.7
2,314,440	+		MIT1002_02054	0.53	-2.5
2,314,446	+		MIT1002_02054	0.53	-3.1
2,314,448	-		MIT1002_02054	0.53	+0.4
2,314,448	-		MIT1002_02054	0.53	+0.2
2,314,457	+		MIT1002_02054	0.53	+0.1
2,314,494	-		MIT1002_02054	0.54	+0.9
2,314,494	-		MIT1002_02054	0.54	+1.0
2,314,498	-		MIT1002_02054	0.55	-0.6
2,314,501	+		MIT1002_02054	0.55	+0.2
2,314,559	+		MIT1002_02054	0.56	-0.2
2,314,579	-		MIT1002_02054	0.57	+0.6
2,314,579	-		MIT1002_02054	0.57	+1.3
2,314,613	+		MIT1002_02054	0.58	-0.8
2,314,659	+		MIT1002_02054	0.60	+0.6
2,314,659	+		MIT1002_02054	0.60	+1.9
2,314,659	+		MIT1002_02054	0.60	+0.2
2,314,692	-		MIT1002_02054	0.61	-0.2
2,314,692	-		MIT1002_02054	0.61	+0.5
2,314,746	-		MIT1002_02054	0.62	+0.7
2,314,844	+		MIT1002_02054	0.65	+0.7
2,315,010	-		MIT1002_02054	0.71	-2.6
2,315,054	+		MIT1002_02054	0.72	+0.1
2,315,162	-		MIT1002_02054	0.75	-1.3
2,315,208	+		MIT1002_02054	0.77	+0.4
2,315,218	+		MIT1002_02054	0.77	+0.6
2,315,226	-		MIT1002_02054	0.77	-1.5
2,315,230	-		MIT1002_02054	0.77	-0.5
2,315,230	-		MIT1002_02054	0.77	-3.0
2,315,244	-		MIT1002_02054	0.78	+0.6
2,315,295	+		MIT1002_02054	0.79	+0.2
2,315,298	-		MIT1002_02054	0.80	+0.2
2,315,298	-		MIT1002_02054	0.80	+2.7
2,315,316	-		MIT1002_02054	0.80	+0.4
2,315,327	+		MIT1002_02054	0.81	+0.2
2,315,332	+		MIT1002_02054	0.81	-0.2
2,315,394	+		MIT1002_02054	0.83	-1.2
2,315,454	+		MIT1002_02054	0.84	+1.3
2,315,538	-		MIT1002_02054	0.87	+0.6
2,315,548	-		MIT1002_02054	0.87	-0.1
2,315,559	-		MIT1002_02054	0.88	+0.1
2,315,593	+		MIT1002_02054	0.89	+0.0
2,315,593	+		MIT1002_02054	0.89	+0.6
2,315,606	-		MIT1002_02054	0.89	+1.0
2,315,606	-		MIT1002_02054	0.89	+0.1
2,315,606	-		MIT1002_02054	0.89	-0.5
2,315,606	-		MIT1002_02054	0.89	+0.6
2,315,606	-		MIT1002_02054	0.89	+0.0
2,315,645	-				+1.0
2,315,652	+				+0.3
2,315,658	-				-0.7
2,315,660	+				-0.4
2,315,660	-				-0.7
2,315,660	-				-0.2
2,315,678	+				+0.6
2,315,702	+				+0.7
2,315,710	-				-0.4
2,315,755	+				-0.3
2,315,763	-				-0.0
2,315,786	-				-0.1
2,315,969	+				-1.4
2,315,977	-				+0.6
2,316,059	-				+0.6
2,316,078	-				+1.8
2,316,083	-				-1.4
2,316,157	-				+0.3
2,316,211	+				+1.7
2,316,219	-		MIT1002_02055	0.10	-3.1
2,316,226	+		MIT1002_02055	0.11	+1.0
2,316,287	-		MIT1002_02055	0.18	-1.2
2,316,289	+		MIT1002_02055	0.18	+0.3
2,316,289	+		MIT1002_02055	0.18	-1.2
2,316,289	+		MIT1002_02055	0.18	-0.3
2,316,289	+		MIT1002_02055	0.18	-0.2
2,316,297	-		MIT1002_02055	0.19	+0.4
2,316,297	-		MIT1002_02055	0.19	-1.4
2,316,297	-		MIT1002_02055	0.19	+1.4
2,316,297	-		MIT1002_02055	0.19	+1.0
2,316,297	-		MIT1002_02055	0.19	+0.2
2,316,301	+		MIT1002_02055	0.19	+1.0
2,316,399	-		MIT1002_02055	0.30	-0.2
2,316,419	+		MIT1002_02055	0.32	+0.6
2,316,615	+		MIT1002_02055	0.54	+0.5
2,316,623	-		MIT1002_02055	0.55	-0.2
2,316,627	+		MIT1002_02055	0.55	-0.1
2,316,645	-		MIT1002_02055	0.57	-0.4
2,316,682	-		MIT1002_02055	0.62	+0.4
2,316,687	-		MIT1002_02055	0.62	-0.4
2,316,726	+		MIT1002_02055	0.66	+0.2
2,316,749	+		MIT1002_02055	0.69	+0.6
2,316,749	-		MIT1002_02055	0.69	+0.5
2,316,749	-		MIT1002_02055	0.69	+0.5
2,316,749	-		MIT1002_02055	0.69	+0.1
2,316,757	-		MIT1002_02055	0.70	+0.5
2,316,806	+		MIT1002_02055	0.75	-0.1
2,316,849	+		MIT1002_02055	0.80	-1.3
2,316,854	+		MIT1002_02055	0.81	-0.7
2,316,854	+		MIT1002_02055	0.81	-2.1
2,316,854	+		MIT1002_02055	0.81	-0.9
2,316,862	-		MIT1002_02055	0.82	-0.4
2,316,911	-		MIT1002_02055	0.87	-0.3
2,316,930	+		MIT1002_02055	0.89	+0.3