Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01692 and MIT1002_01693 are separated by 215 nucleotides MIT1002_01693 and MIT1002_01694 are separated by 30 nucleotides MIT1002_01694 and MIT1002_01695 are separated by 30 nucleotides MIT1002_01695 and MIT1002_01696 are separated by 31 nucleotides MIT1002_01696 and MIT1002_01697 are separated by 318 nucleotides
MIT1002_01692: MIT1002_01692 - hypothetical protein, at 1,880,322 to 1,881,812
_01692
MIT1002_01693: MIT1002_01693 - tRNA-Asp, at 1,882,028 to 1,882,104
_01693
MIT1002_01694: MIT1002_01694 - tRNA-Asp, at 1,882,135 to 1,882,211
_01694
MIT1002_01695: MIT1002_01695 - tRNA-Asp, at 1,882,242 to 1,882,318
_01695
MIT1002_01696: MIT1002_01696 - tRNA-Asp, at 1,882,350 to 1,882,426
_01696
MIT1002_01697: MIT1002_01697 - putative membrane protein YjcC, at 1,882,745 to 1,884,298
_01697
Position (kb) 1882
1883 Strain fitness (log2 ratio) -2
-1
0
1 at 1881.093 kb on + strand, within MIT1002_01692 at 1881.101 kb on - strand, within MIT1002_01692 at 1881.260 kb on - strand, within MIT1002_01692 at 1881.301 kb on + strand, within MIT1002_01692 at 1881.318 kb on - strand, within MIT1002_01692 at 1881.331 kb on - strand, within MIT1002_01692 at 1881.352 kb on + strand, within MIT1002_01692 at 1881.359 kb on + strand, within MIT1002_01692 at 1881.359 kb on + strand, within MIT1002_01692 at 1881.359 kb on + strand, within MIT1002_01692 at 1881.374 kb on - strand, within MIT1002_01692 at 1881.462 kb on + strand, within MIT1002_01692 at 1881.489 kb on + strand, within MIT1002_01692 at 1881.504 kb on - strand, within MIT1002_01692 at 1881.508 kb on + strand, within MIT1002_01692 at 1881.536 kb on - strand, within MIT1002_01692 at 1881.579 kb on + strand, within MIT1002_01692 at 1881.594 kb on - strand, within MIT1002_01692 at 1881.610 kb on + strand, within MIT1002_01692 at 1881.610 kb on + strand, within MIT1002_01692 at 1881.618 kb on - strand, within MIT1002_01692 at 1881.618 kb on - strand, within MIT1002_01692 at 1881.623 kb on + strand, within MIT1002_01692 at 1881.623 kb on + strand, within MIT1002_01692 at 1881.683 kb on - strand at 1881.689 kb on + strand at 1881.758 kb on - strand at 1881.835 kb on - strand at 1881.847 kb on + strand at 1882.214 kb on + strand at 1882.224 kb on + strand at 1882.375 kb on - strand, within MIT1002_01696 at 1882.487 kb on + strand at 1882.617 kb on - strand at 1882.623 kb on + strand at 1882.815 kb on + strand at 1882.823 kb on - strand at 1882.850 kb on - strand at 1882.879 kb on - strand at 1882.879 kb on - strand at 1882.898 kb on - strand at 1883.070 kb on - strand, within MIT1002_01697 at 1883.085 kb on + strand, within MIT1002_01697 at 1883.093 kb on - strand, within MIT1002_01697
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1 remove 1,881,093 + MIT1002_01692 0.52 -1.3 1,881,101 - MIT1002_01692 0.52 +0.1 1,881,260 - MIT1002_01692 0.63 -0.6 1,881,301 + MIT1002_01692 0.66 +1.5 1,881,318 - MIT1002_01692 0.67 -0.1 1,881,331 - MIT1002_01692 0.68 +0.1 1,881,352 + MIT1002_01692 0.69 +0.5 1,881,359 + MIT1002_01692 0.70 -0.9 1,881,359 + MIT1002_01692 0.70 +1.3 1,881,359 + MIT1002_01692 0.70 +0.3 1,881,374 - MIT1002_01692 0.71 +0.9 1,881,462 + MIT1002_01692 0.76 +0.0 1,881,489 + MIT1002_01692 0.78 -0.1 1,881,504 - MIT1002_01692 0.79 -2.0 1,881,508 + MIT1002_01692 0.80 +0.6 1,881,536 - MIT1002_01692 0.81 -0.1 1,881,579 + MIT1002_01692 0.84 +0.8 1,881,594 - MIT1002_01692 0.85 -0.3 1,881,610 + MIT1002_01692 0.86 +0.3 1,881,610 + MIT1002_01692 0.86 +0.6 1,881,618 - MIT1002_01692 0.87 -0.3 1,881,618 - MIT1002_01692 0.87 +1.4 1,881,623 + MIT1002_01692 0.87 +0.3 1,881,623 + MIT1002_01692 0.87 +1.4 1,881,683 - +0.9 1,881,689 + +0.1 1,881,758 - +0.2 1,881,835 - -1.5 1,881,847 + +0.6 1,882,214 + -1.3 1,882,224 + +0.5 1,882,375 - MIT1002_01696 0.32 -1.0 1,882,487 + +0.0 1,882,617 - +0.6 1,882,623 + -0.2 1,882,815 + +0.8 1,882,823 - +0.3 1,882,850 - +0.6 1,882,879 - -0.5 1,882,879 - -0.6 1,882,898 - +1.1 1,883,070 - MIT1002_01697 0.21 -0.3 1,883,085 + MIT1002_01697 0.22 -0.3 1,883,093 - MIT1002_01697 0.22 +1.3
Or see this region's nucleotide sequence