Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01689

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
1,877,143	-		MIT1002_01688	0.53	-0.3
1,877,170	+		MIT1002_01688	0.55	+1.2
1,877,174	+		MIT1002_01688	0.55	+0.4
1,877,190	+		MIT1002_01688	0.56	+0.5
1,877,196	-		MIT1002_01688	0.57	-1.8
1,877,206	+		MIT1002_01688	0.58	-0.9
1,877,229	+		MIT1002_01688	0.60	-0.0
1,877,229	+		MIT1002_01688	0.60	+0.3
1,877,237	-		MIT1002_01688	0.60	+0.2
1,877,299	-		MIT1002_01688	0.66	+0.5
1,877,355	+		MIT1002_01688	0.70	+1.5
1,877,355	+		MIT1002_01688	0.70	+0.2
1,877,355	+		MIT1002_01688	0.70	+0.1
1,877,355	+		MIT1002_01688	0.70	+0.9
1,877,355	+		MIT1002_01688	0.70	+1.2
1,877,355	+		MIT1002_01688	0.70	+0.1
1,877,360	+		MIT1002_01688	0.71	+0.6
1,877,363	-		MIT1002_01688	0.71	-3.9
1,877,363	-		MIT1002_01688	0.71	+0.1
1,877,363	-		MIT1002_01688	0.71	+0.6
1,877,363	-		MIT1002_01688	0.71	-0.7
1,877,363	-		MIT1002_01688	0.71	-0.1
1,877,363	-		MIT1002_01688	0.71	+0.8
1,877,363	-		MIT1002_01688	0.71	+0.3
1,877,384	-		MIT1002_01688	0.73	+1.4
1,877,448	+		MIT1002_01688	0.78	+1.3
1,877,454	-		MIT1002_01688	0.79	+0.1
1,877,551	+		MIT1002_01688	0.87	-0.4
1,877,556	+		MIT1002_01688	0.87	+0.8
1,877,556	+		MIT1002_01688	0.87	+0.5
1,877,556	+		MIT1002_01688	0.87	+0.8
1,877,564	-		MIT1002_01688	0.88	+0.2
1,877,564	-		MIT1002_01688	0.88	+0.7
1,877,564	-		MIT1002_01688	0.88	+0.7
1,877,614	+				+0.7
1,877,616	+				+0.1
1,877,635	-				-1.1
1,877,682	-				+1.3
1,877,690	+				+0.6
1,877,703	-				-0.5
1,877,707	+				-0.3
1,877,713	-				+1.4
1,877,715	-				+1.0
1,877,831	+				-2.3
1,877,851	-				+1.1
1,877,861	+				+0.2
1,877,874	-				+0.9
1,877,875	+				-0.0
1,877,875	+				-0.5
1,877,883	-				+1.0
1,877,883	-				+0.7
1,877,956	+				+1.1
1,878,005	-				+1.3
1,878,019	-				-0.3
1,878,032	-				+1.0
1,878,120	-		MIT1002_01689	0.16	+1.8
1,878,158	-		MIT1002_01689	0.20	-0.4
1,878,171	+		MIT1002_01689	0.21	-2.0
1,878,183	+		MIT1002_01689	0.22	+1.8
1,878,255	+		MIT1002_01689	0.30	-1.0
1,878,262	+		MIT1002_01689	0.30	+0.2
1,878,270	-		MIT1002_01689	0.31	-0.5
1,878,288	+		MIT1002_01689	0.33	-0.7
1,878,289	+		MIT1002_01689	0.33	-2.1
1,878,297	-		MIT1002_01689	0.34	+0.9
1,878,297	-		MIT1002_01689	0.34	+0.9
1,878,326	+		MIT1002_01689	0.37	+0.9
1,878,417	+		MIT1002_01689	0.46	+1.9
1,878,417	+		MIT1002_01689	0.46	+0.3
1,878,417	+		MIT1002_01689	0.46	-0.4
1,878,417	+		MIT1002_01689	0.46	-0.4
1,878,417	+		MIT1002_01689	0.46	-0.2
1,878,417	+		MIT1002_01689	0.46	+0.7
1,878,417	+		MIT1002_01689	0.46	+2.2
1,878,417	+		MIT1002_01689	0.46	+0.2
1,878,417	+		MIT1002_01689	0.46	-0.3
1,878,425	-		MIT1002_01689	0.47	+0.3
1,878,425	-		MIT1002_01689	0.47	+1.1
1,878,425	-		MIT1002_01689	0.47	+0.4
1,878,455	+		MIT1002_01689	0.50	+0.7
1,878,455	+		MIT1002_01689	0.50	+2.2
1,878,455	+		MIT1002_01689	0.50	-0.4
1,878,455	+		MIT1002_01689	0.50	-0.8
1,878,463	-		MIT1002_01689	0.51	-0.4
1,878,463	-		MIT1002_01689	0.51	-0.7
1,878,612	+		MIT1002_01689	0.66	+0.3
1,878,630	-		MIT1002_01689	0.68	+0.7
1,878,690	+		MIT1002_01689	0.74	-0.3
1,878,743	+		MIT1002_01689	0.79	+0.9
1,878,806	+		MIT1002_01689	0.86	+1.0
1,878,821	+		MIT1002_01689	0.87	+3.3
1,878,845	-		MIT1002_01689	0.90	+0.9
1,878,862	+				+0.9
1,878,867	+				+1.7
1,878,867	+				+1.1
1,878,887	+				+0.2
1,878,909	+				-0.5
1,878,927	-				-0.5
1,878,932	-				-0.4
1,879,137	+		MIT1002_01690	0.36	-0.5
1,879,162	+		MIT1002_01690	0.42	-0.4
1,879,182	+		MIT1002_01690	0.46	+0.5
1,879,240	+		MIT1002_01690	0.58	-0.5
1,879,261	-		MIT1002_01690	0.63	+1.4
1,879,307	-		MIT1002_01690	0.72	+1.4
1,879,307	-		MIT1002_01690	0.72	+0.9
1,879,326	+		MIT1002_01690	0.76	+2.6
1,879,328	-		MIT1002_01690	0.77	+1.7
1,879,358	+		MIT1002_01690	0.83	+0.4
1,879,363	+		MIT1002_01690	0.84	-3.4
1,879,372	-		MIT1002_01690	0.86	+0.6
1,879,379	+		MIT1002_01690	0.88	+0.4
1,879,379	+		MIT1002_01690	0.88	-0.6
1,879,379	+		MIT1002_01690	0.88	+0.3
1,879,379	+		MIT1002_01690	0.88	+1.1
1,879,379	+		MIT1002_01690	0.88	+3.2
1,879,387	-		MIT1002_01690	0.89	-1.0
1,879,498	+				-0.3