Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01452

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
1,598,071	+		MIT1002_01451	0.47	-1.4
1,598,071	+		MIT1002_01451	0.47	-1.6
1,598,079	-		MIT1002_01451	0.48	-0.5
1,598,079	-		MIT1002_01451	0.48	-0.4
1,598,079	-		MIT1002_01451	0.48	-0.7
1,598,081	-		MIT1002_01451	0.48	-1.7
1,598,089	-		MIT1002_01451	0.48	+0.0
1,598,091	+		MIT1002_01451	0.49	+0.5
1,598,091	+		MIT1002_01451	0.49	+0.2
1,598,091	+		MIT1002_01451	0.49	+0.2
1,598,091	+		MIT1002_01451	0.49	-0.3
1,598,099	-		MIT1002_01451	0.49	-0.2
1,598,099	-		MIT1002_01451	0.49	+1.0
1,598,099	-		MIT1002_01451	0.49	-0.1
1,598,099	-		MIT1002_01451	0.49	-0.3
1,598,099	-		MIT1002_01451	0.49	-1.1
1,598,099	-		MIT1002_01451	0.49	-0.1
1,598,099	-		MIT1002_01451	0.49	-0.2
1,598,099	-		MIT1002_01451	0.49	-0.7
1,598,111	+		MIT1002_01451	0.50	+2.7
1,598,351	+		MIT1002_01451	0.69	-0.8
1,598,417	-		MIT1002_01451	0.74	-0.1
1,598,419	+		MIT1002_01451	0.74	-3.4
1,598,427	-		MIT1002_01451	0.74	+0.3
1,598,427	-		MIT1002_01451	0.74	+0.9
1,598,427	-		MIT1002_01451	0.74	+0.5
1,598,427	-		MIT1002_01451	0.74	+0.5
1,598,427	-		MIT1002_01451	0.74	-0.3
1,598,434	+		MIT1002_01451	0.75	+0.5
1,598,434	+		MIT1002_01451	0.75	-0.1
1,598,442	-		MIT1002_01451	0.76	-0.2
1,598,446	+		MIT1002_01451	0.76	+1.6
1,598,507	+		MIT1002_01451	0.81	+0.4
1,598,510	+		MIT1002_01451	0.81	-1.3
1,598,599	+		MIT1002_01451	0.88	+0.1
1,598,599	+		MIT1002_01451	0.88	-0.2
1,598,611	+		MIT1002_01451	0.89	-0.6
1,598,967	+				+0.3
1,599,077	-				-0.7
1,599,085	+				+1.1
1,599,096	+				-0.1
1,599,147	-				+0.5
1,599,267	-		MIT1002_01452	0.10	+0.3
1,599,315	-		MIT1002_01452	0.12	+0.3
1,599,494	-		MIT1002_01452	0.20	+1.2
1,599,508	+		MIT1002_01452	0.20	+1.7
1,599,508	+		MIT1002_01452	0.20	+0.4
1,599,546	-		MIT1002_01452	0.22	-0.4
1,599,554	-		MIT1002_01452	0.22	+1.4
1,599,600	+		MIT1002_01452	0.24	+1.6
1,599,633	+		MIT1002_01452	0.26	-0.0
1,599,641	-		MIT1002_01452	0.26	+0.3
1,599,664	+		MIT1002_01452	0.27	+0.5
1,599,702	-		MIT1002_01452	0.29	+0.3
1,599,742	-		MIT1002_01452	0.30	-0.5
1,599,821	+		MIT1002_01452	0.34	-0.9
1,599,821	+		MIT1002_01452	0.34	+1.3
1,599,829	-		MIT1002_01452	0.34	+0.2
1,599,895	-		MIT1002_01452	0.37	-0.4
1,599,895	-		MIT1002_01452	0.37	-0.4
1,600,023	+		MIT1002_01452	0.42	+1.6
1,600,031	-		MIT1002_01452	0.42	+0.9
1,600,033	+		MIT1002_01452	0.43	+0.7
1,600,046	-		MIT1002_01452	0.43	-0.6
1,600,094	+		MIT1002_01452	0.45	-0.4
1,600,248	+		MIT1002_01452	0.52	+1.2
1,600,248	+		MIT1002_01452	0.52	+0.8
1,600,256	-		MIT1002_01452	0.52	-1.1
1,600,256	-		MIT1002_01452	0.52	-0.1
1,600,311	+		MIT1002_01452	0.54	-0.5
1,600,319	-		MIT1002_01452	0.55	+0.5
1,600,367	-		MIT1002_01452	0.57	-0.0
1,600,436	-		MIT1002_01452	0.59	+0.7
1,600,479	-		MIT1002_01452	0.61	-0.9
1,600,500	-		MIT1002_01452	0.62	-1.1
1,600,538	+		MIT1002_01452	0.64	-1.5
1,600,546	-		MIT1002_01452	0.64	+1.2
1,600,566	+		MIT1002_01452	0.65	-0.7
1,600,583	+		MIT1002_01452	0.66	+0.6
1,600,592	-		MIT1002_01452	0.66	-0.3
1,600,617	+		MIT1002_01452	0.67	-0.7
1,600,625	-		MIT1002_01452	0.67	-0.4
1,600,652	-		MIT1002_01452	0.69	-0.6
1,600,663	+		MIT1002_01452	0.69	-0.6
1,600,687	+		MIT1002_01452	0.70	+0.2
1,600,687	+		MIT1002_01452	0.70	-2.8
1,600,687	+		MIT1002_01452	0.70	-2.8
1,600,687	+		MIT1002_01452	0.70	-0.1
1,600,695	-		MIT1002_01452	0.70	+0.5
1,600,695	-		MIT1002_01452	0.70	+1.9
1,600,695	-		MIT1002_01452	0.70	-0.7
1,600,695	-		MIT1002_01452	0.70	-0.7
1,600,695	-		MIT1002_01452	0.70	+0.0
1,600,695	-		MIT1002_01452	0.70	+0.3
1,600,706	+		MIT1002_01452	0.71	-1.3
1,600,728	-		MIT1002_01452	0.72	-1.1
1,600,752	-		MIT1002_01452	0.73	+1.0
1,600,752	-		MIT1002_01452	0.73	+0.2
1,600,752	-		MIT1002_01452	0.73	-0.7
1,600,763	-		MIT1002_01452	0.73	+0.1
1,600,810	-		MIT1002_01452	0.75	-3.5
1,600,867	+		MIT1002_01452	0.78	-0.7
1,600,875	-		MIT1002_01452	0.78	+0.1
1,600,875	-		MIT1002_01452	0.78	+0.2
1,600,891	-		MIT1002_01452	0.79	+0.2
1,600,923	+		MIT1002_01452	0.80	-2.4
1,600,934	+		MIT1002_01452	0.80	+0.1
1,601,002	+		MIT1002_01452	0.83	+0.3
1,601,027	+		MIT1002_01452	0.84	-0.8
1,601,030	-		MIT1002_01452	0.84	-2.1
1,601,047	+		MIT1002_01452	0.85	+0.2
1,601,274	+				+0.1
1,601,274	+				-0.2
1,601,368	-				+0.7
1,601,376	-				+0.6
1,601,451	+				+0.5
1,601,452	-				+0.5
1,601,474	-				+0.8
1,601,523	-				+0.8
1,601,534	+				+0.4
1,601,534	+				+0.2
1,601,535	-				+1.1
1,601,542	-				-0.8
1,601,677	+				+0.4
1,601,678	-				-0.1
1,601,682	+				-0.4
1,601,682	+				-1.1
1,601,682	+				+1.2
1,601,682	+				-0.1
1,601,682	+				+0.3
1,601,682	+				-0.8
1,601,682	+				-0.5
1,601,682	+				+2.0
1,601,682	+				-0.7
1,601,685	-				-2.4
1,601,690	-				+0.0
1,601,690	-				+0.2
1,601,690	-				+0.3
1,601,690	-				-0.2
1,601,692	+				-0.7
1,601,704	+				+0.3
1,601,714	+		MIT1002_01453	0.10	+0.3
1,601,858	-		MIT1002_01453	0.32	-0.9
1,601,864	+		MIT1002_01453	0.33	+1.1
1,601,872	-		MIT1002_01453	0.34	+0.4
1,601,998	+		MIT1002_01453	0.53	-1.7
1,601,998	+		MIT1002_01453	0.53	-0.1
1,602,006	-		MIT1002_01453	0.54	-1.2
1,602,006	-		MIT1002_01453	0.54	-0.6
1,602,006	-		MIT1002_01453	0.54	+0.9
1,602,006	-		MIT1002_01453	0.54	+0.4
1,602,006	-		MIT1002_01453	0.54	-0.3
1,602,130	-		MIT1002_01453	0.73	+0.9
1,602,164	-		MIT1002_01453	0.78	+0.7
1,602,165	-		MIT1002_01453	0.78	+1.1
1,602,165	-		MIT1002_01453	0.78	+0.2
1,602,223	-		MIT1002_01453	0.87	+0.1
1,602,223	-		MIT1002_01453	0.87	+1.6
1,602,225	+		MIT1002_01453	0.87	+0.5
1,602,248	+				-1.9
1,602,249	+				+0.9
1,602,308	+				-1.4
1,602,314	-				+0.5
1,602,335	+				-0.8