Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01276

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
1,405,817	+		MIT1002_01275	0.44	-1.3
1,405,852	+		MIT1002_01275	0.46	+1.3
1,405,855	-		MIT1002_01275	0.46	+1.0
1,405,860	-		MIT1002_01275	0.47	+0.8
1,405,860	-		MIT1002_01275	0.47	+1.0
1,405,904	+		MIT1002_01275	0.49	-0.8
1,405,949	-		MIT1002_01275	0.52	+0.2
1,406,015	-		MIT1002_01275	0.57	-0.4
1,406,090	+		MIT1002_01275	0.62	+1.9
1,406,095	+		MIT1002_01275	0.62	-1.9
1,406,098	-		MIT1002_01275	0.62	+1.4
1,406,098	-		MIT1002_01275	0.62	+0.0
1,406,100	+		MIT1002_01275	0.62	+2.8
1,406,124	-		MIT1002_01275	0.64	+0.4
1,406,143	+		MIT1002_01275	0.65	+0.3
1,406,151	-		MIT1002_01275	0.66	-1.0
1,406,151	-		MIT1002_01275	0.66	-0.9
1,406,172	+		MIT1002_01275	0.67	+0.4
1,406,172	+		MIT1002_01275	0.67	+1.4
1,406,237	-		MIT1002_01275	0.72	+0.5
1,406,245	+		MIT1002_01275	0.72	-2.0
1,406,245	+		MIT1002_01275	0.72	-0.6
1,406,275	-		MIT1002_01275	0.74	-1.0
1,406,281	+		MIT1002_01275	0.75	+0.3
1,406,282	-		MIT1002_01275	0.75	-1.3
1,406,464	-		MIT1002_01275	0.87	-2.2
1,406,481	-		MIT1002_01275	0.88	+1.2
1,406,481	-		MIT1002_01275	0.88	-1.9
1,406,481	-		MIT1002_01275	0.88	+0.3
1,406,487	-		MIT1002_01275	0.88	-1.0
1,406,559	+				+1.4
1,406,568	-				+0.4
1,406,568	-				-0.0
1,406,699	-				+0.5
1,406,716	+				+0.1
1,406,894	-				+1.8
1,406,934	+				-0.4
1,406,994	+		MIT1002_01276	0.11	-0.1
1,407,002	-		MIT1002_01276	0.11	+1.6
1,407,086	+		MIT1002_01276	0.15	+1.3
1,407,175	-		MIT1002_01276	0.20	-1.9
1,407,180	-		MIT1002_01276	0.20	+0.4
1,407,213	+		MIT1002_01276	0.22	+0.1
1,407,213	+		MIT1002_01276	0.22	+1.0
1,407,213	+		MIT1002_01276	0.22	-0.1
1,407,221	-		MIT1002_01276	0.22	-1.0
1,407,224	+		MIT1002_01276	0.23	+0.8
1,407,252	+		MIT1002_01276	0.24	-0.9
1,407,322	+		MIT1002_01276	0.27	-0.0
1,407,388	+		MIT1002_01276	0.31	+0.5
1,407,388	+		MIT1002_01276	0.31	+1.4
1,407,390	+		MIT1002_01276	0.31	+0.6
1,407,447	+		MIT1002_01276	0.34	+0.1
1,407,510	+		MIT1002_01276	0.37	+0.4
1,407,558	+		MIT1002_01276	0.39	-0.2
1,407,566	+		MIT1002_01276	0.40	+0.1
1,407,574	-		MIT1002_01276	0.40	-1.4
1,407,586	+		MIT1002_01276	0.41	-0.5
1,407,626	-		MIT1002_01276	0.43	-0.2
1,407,704	+		MIT1002_01276	0.47	-1.0
1,407,710	-		MIT1002_01276	0.47	-0.7
1,407,726	-		MIT1002_01276	0.48	+0.3
1,407,734	-		MIT1002_01276	0.48	+0.7
1,407,745	+		MIT1002_01276	0.49	+0.2
1,407,754	+		MIT1002_01276	0.49	-0.2
1,407,762	-		MIT1002_01276	0.50	-0.1
1,407,762	-		MIT1002_01276	0.50	-3.2
1,407,797	+		MIT1002_01276	0.52	+0.5
1,407,893	+		MIT1002_01276	0.57	+0.2
1,407,920	-		MIT1002_01276	0.58	+1.4
1,407,921	-		MIT1002_01276	0.58	+0.2
1,408,072	+		MIT1002_01276	0.66	+0.6
1,408,137	-		MIT1002_01276	0.69	-1.0
1,408,190	+		MIT1002_01276	0.72	+1.9
1,408,197	+		MIT1002_01276	0.72	-0.3
1,408,197	+		MIT1002_01276	0.72	+0.2
1,408,232	-		MIT1002_01276	0.74	-1.3
1,408,234	-		MIT1002_01276	0.74	+0.3
1,408,292	-		MIT1002_01276	0.77	-0.1
1,408,389	-		MIT1002_01276	0.82	+0.1
1,408,390	+		MIT1002_01276	0.82	-0.7
1,408,443	+		MIT1002_01276	0.84	+2.9
1,408,449	+		MIT1002_01276	0.85	-1.2
1,408,477	-		MIT1002_01276	0.86	-0.1
1,408,479	-		MIT1002_01276	0.86	+0.3
1,408,497	-		MIT1002_01276	0.87	+0.1
1,408,545	-		MIT1002_01276	0.90	+0.4
1,408,545	-		MIT1002_01276	0.90	-0.2
1,408,586	-				+1.0
1,408,666	-				+0.1
1,408,722	-				+0.9
1,408,744	-				-0.3
1,408,760	+				-1.7
1,408,770	-				+1.6
1,408,846	-				-0.4
1,408,860	-				-0.7
1,408,938	+				+0.9
1,408,947	+				+0.8
1,408,955	-				-0.3
1,408,969	+				-0.1
1,409,074	+		MIT1002_01277	0.16	-0.7
1,409,074	+		MIT1002_01277	0.16	-0.4
1,409,082	-		MIT1002_01277	0.17	+0.0
1,409,082	-		MIT1002_01277	0.17	-0.6
1,409,082	-		MIT1002_01277	0.17	-0.8
1,409,082	-		MIT1002_01277	0.17	-0.8
1,409,082	-		MIT1002_01277	0.17	-1.0
1,409,082	-		MIT1002_01277	0.17	-1.0
1,409,102	-		MIT1002_01277	0.20	+0.0
1,409,112	-		MIT1002_01277	0.22	-0.1
1,409,184	-		MIT1002_01277	0.32	-3.2
1,409,184	-		MIT1002_01277	0.32	-2.0
1,409,184	-		MIT1002_01277	0.32	-2.5
1,409,275	+		MIT1002_01277	0.45	+0.8
1,409,363	+		MIT1002_01277	0.57	-0.7
1,409,726	+		MIT1002_01278	0.12	+1.1