Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01125

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
1,235,908	+				+1.7
1,235,953	-				-0.6
1,235,993	+				+0.5
1,236,001	-				+0.0
1,236,008	+				+0.0
1,236,016	-				+1.0
1,236,016	-				-1.0
1,236,105	-				+0.1
1,236,112	-				+1.0
1,236,183	+		MIT1002_01124	0.15	-0.1
1,236,216	-		MIT1002_01124	0.21	+1.0
1,236,235	-		MIT1002_01124	0.24	-1.4
1,236,415	-		MIT1002_01124	0.55	+0.8
1,236,435	+		MIT1002_01124	0.59	-0.3
1,236,452	+		MIT1002_01124	0.62	-1.6
1,236,454	+		MIT1002_01124	0.62	+1.8
1,236,454	+		MIT1002_01124	0.62	-0.3
1,236,454	+		MIT1002_01124	0.62	+0.9
1,236,454	+		MIT1002_01124	0.62	+2.1
1,236,462	-		MIT1002_01124	0.64	+1.2
1,236,468	+		MIT1002_01124	0.65	+2.0
1,236,506	+		MIT1002_01124	0.71	+0.2
1,236,506	+		MIT1002_01124	0.71	+1.5
1,236,506	+		MIT1002_01124	0.71	+1.4
1,236,506	+		MIT1002_01124	0.71	-0.6
1,236,506	+		MIT1002_01124	0.71	-1.2
1,236,506	+		MIT1002_01124	0.71	+0.9
1,236,511	+		MIT1002_01124	0.72	-0.9
1,236,519	-		MIT1002_01124	0.73	-0.1
1,236,519	-		MIT1002_01124	0.73	+1.2
1,236,519	-		MIT1002_01124	0.73	-1.2
1,236,521	+		MIT1002_01124	0.74	-1.5
1,236,545	-		MIT1002_01124	0.78	-0.8
1,236,549	+		MIT1002_01124	0.79	-2.2
1,236,725	+				+0.2
1,236,725	+				-0.4
1,236,757	+				-1.5
1,236,828	-				-1.0
1,236,829	-				+0.6
1,236,845	+				-2.3
1,236,883	+				-0.5
1,236,891	-				-0.2
1,236,928	-				+1.1
1,236,938	+				-0.4
1,236,946	-				-0.5
1,237,003	+				-1.5
1,237,019	+				-3.3
1,237,019	+				-0.9
1,237,020	+				+1.3
1,237,157	+		MIT1002_01125	0.12	-0.9
1,237,157	+		MIT1002_01125	0.12	+0.5
1,237,182	-		MIT1002_01125	0.14	-0.6
1,237,186	-		MIT1002_01125	0.14	+0.2
1,237,216	-		MIT1002_01125	0.15	+0.4
1,237,247	-		MIT1002_01125	0.17	+0.4
1,237,318	+		MIT1002_01125	0.20	-1.8
1,237,326	-		MIT1002_01125	0.21	-1.2
1,237,326	-		MIT1002_01125	0.21	+1.3
1,237,416	+		MIT1002_01125	0.25	-0.3
1,237,498	+		MIT1002_01125	0.29	-2.3
1,237,511	-		MIT1002_01125	0.29	-0.8
1,237,528	+		MIT1002_01125	0.30	+1.3
1,237,534	-		MIT1002_01125	0.31	-2.5
1,237,536	-		MIT1002_01125	0.31	-2.8
1,237,536	-		MIT1002_01125	0.31	+0.7
1,237,536	-		MIT1002_01125	0.31	-0.4
1,237,536	-		MIT1002_01125	0.31	-1.9
1,237,536	-		MIT1002_01125	0.31	-0.7
1,237,637	+		MIT1002_01125	0.36	+0.2
1,237,787	-		MIT1002_01125	0.43	+1.5
1,237,805	+		MIT1002_01125	0.44	+2.9
1,237,832	-		MIT1002_01125	0.45	+0.1
1,237,832	-		MIT1002_01125	0.45	+1.1
1,237,870	+		MIT1002_01125	0.47	+0.2
1,237,878	-		MIT1002_01125	0.47	+0.4
1,237,897	-		MIT1002_01125	0.48	-0.5
1,237,970	-		MIT1002_01125	0.52	-0.1
1,238,036	+		MIT1002_01125	0.55	+0.3
1,238,074	+		MIT1002_01125	0.57	+0.6
1,238,074	+		MIT1002_01125	0.57	+1.4
1,238,074	+		MIT1002_01125	0.57	-0.6
1,238,082	-		MIT1002_01125	0.57	+0.2
1,238,082	-		MIT1002_01125	0.57	+1.6
1,238,092	-		MIT1002_01125	0.57	-0.2
1,238,092	-		MIT1002_01125	0.57	+0.5
1,238,105	+		MIT1002_01125	0.58	+1.7
1,238,113	-		MIT1002_01125	0.58	-0.8
1,238,114	-		MIT1002_01125	0.58	+0.0
1,238,139	+		MIT1002_01125	0.60	+0.9
1,238,182	-		MIT1002_01125	0.62	-0.7
1,238,191	-		MIT1002_01125	0.62	-2.3
1,238,197	-		MIT1002_01125	0.62	+2.4
1,238,320	-		MIT1002_01125	0.68	-1.0
1,238,334	-		MIT1002_01125	0.69	+0.8
1,238,391	+		MIT1002_01125	0.72	-0.6
1,238,398	-		MIT1002_01125	0.72	-2.8
1,238,413	-		MIT1002_01125	0.73	+0.0
1,238,445	-		MIT1002_01125	0.74	-0.6
1,238,448	-		MIT1002_01125	0.75	+0.0
1,238,485	+		MIT1002_01125	0.76	+1.4
1,238,593	+		MIT1002_01125	0.82	+1.2
1,238,617	-		MIT1002_01125	0.83	+0.8
1,238,633	+		MIT1002_01125	0.83	+0.4
1,238,652	+		MIT1002_01125	0.84	-0.1
1,238,652	-		MIT1002_01125	0.84	-1.0
1,238,762	+		MIT1002_01125	0.90	-0.1
1,238,770	-				+0.0
1,238,823	+				-0.5
1,238,849	+				+0.8
1,238,876	+				-0.4
1,238,938	-				+2.3
1,239,009	-				+1.4
1,239,063	+				+0.4
1,239,320	+		MIT1002_01126	0.27	+0.1
1,239,334	+		MIT1002_01126	0.28	+0.1
1,239,342	-		MIT1002_01126	0.28	+0.1
1,239,370	+		MIT1002_01126	0.31	+0.5
1,239,402	+		MIT1002_01126	0.33	-0.2
1,239,412	-		MIT1002_01126	0.34	-0.6
1,239,497	+		MIT1002_01126	0.40	+0.4
1,239,497	+		MIT1002_01126	0.40	+1.2
1,239,621	+		MIT1002_01126	0.49	+0.9
1,239,634	+		MIT1002_01126	0.50	+1.1
1,239,676	+		MIT1002_01126	0.54	+0.8
1,239,699	+		MIT1002_01126	0.55	+0.0
1,239,706	-		MIT1002_01126	0.56	-0.0
1,239,768	+		MIT1002_01126	0.61	-0.9
1,239,785	-		MIT1002_01126	0.62	+0.1
1,239,842	+		MIT1002_01126	0.66	+0.7
1,239,844	-		MIT1002_01126	0.66	-0.2
1,239,927	-		MIT1002_01126	0.73	-0.5