Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01100

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
1,205,905	-		MIT1002_01098	0.50	-1.2
1,205,913	-		MIT1002_01098	0.50	+0.7
1,206,016	+		MIT1002_01098	0.60	+0.0
1,206,090	-		MIT1002_01098	0.66	-1.5
1,206,137	-		MIT1002_01098	0.70	+0.2
1,206,171	+		MIT1002_01098	0.73	+0.6
1,206,320	-		MIT1002_01098	0.87	+0.2
1,206,407	-				-0.2
1,206,411	-				-0.3
1,206,463	+				-1.1
1,206,468	+				+0.3
1,206,563	-		MIT1002_01099	0.64	-1.5
1,206,618	-		MIT1002_01099	0.84	-1.1
1,206,691	-				+0.2
1,206,697	-				-0.8
1,206,717	-				+0.4
1,206,727	-				+0.1
1,206,727	-				+0.1
1,206,757	+				-0.2
1,206,766	+				+0.9
1,206,897	-				-0.5
1,206,909	-				-0.7
1,206,909	-				+2.0
1,206,976	+				-0.9
1,206,994	+				+0.2
1,207,070	-				+1.3
1,207,072	+				-0.6
1,207,177	-		MIT1002_01100	0.13	-0.2
1,207,189	+		MIT1002_01100	0.14	-3.4
1,207,363	+		MIT1002_01100	0.22	-1.5
1,207,425	+		MIT1002_01100	0.25	-1.3
1,207,455	-		MIT1002_01100	0.26	+0.2
1,207,464	+		MIT1002_01100	0.27	+1.1
1,207,554	+		MIT1002_01100	0.31	-0.1
1,207,633	+		MIT1002_01100	0.35	-2.1
1,207,644	+		MIT1002_01100	0.35	-2.3
1,207,724	+		MIT1002_01100	0.39	-0.7
1,207,837	+		MIT1002_01100	0.44	+1.7
1,207,858	+		MIT1002_01100	0.45	+1.2
1,207,872	-		MIT1002_01100	0.46	-0.4
1,207,878	-		MIT1002_01100	0.46	-0.3
1,207,918	+		MIT1002_01100	0.48	+0.3
1,207,968	-		MIT1002_01100	0.51	-2.2
1,208,000	-		MIT1002_01100	0.52	-0.2
1,208,073	+		MIT1002_01100	0.56	-2.1
1,208,073	+		MIT1002_01100	0.56	+0.4
1,208,073	+		MIT1002_01100	0.56	+0.1
1,208,073	+		MIT1002_01100	0.56	+1.0
1,208,080	+		MIT1002_01100	0.56	+0.5
1,208,081	-		MIT1002_01100	0.56	+1.1
1,208,081	-		MIT1002_01100	0.56	+0.6
1,208,081	-		MIT1002_01100	0.56	+1.1
1,208,081	-		MIT1002_01100	0.56	-1.8
1,208,136	-		MIT1002_01100	0.59	+0.5
1,208,171	-		MIT1002_01100	0.60	+0.2
1,208,240	-		MIT1002_01100	0.64	+0.4
1,208,242	+		MIT1002_01100	0.64	-1.1
1,208,275	+		MIT1002_01100	0.65	-1.3
1,208,309	+		MIT1002_01100	0.67	-0.6
1,208,313	-		MIT1002_01100	0.67	+0.2
1,208,313	-		MIT1002_01100	0.67	-0.3
1,208,313	-		MIT1002_01100	0.67	+0.8
1,208,317	-		MIT1002_01100	0.67	-0.7
1,208,350	-		MIT1002_01100	0.69	+0.9
1,208,350	-		MIT1002_01100	0.69	+1.1
1,208,356	+		MIT1002_01100	0.69	+0.1
1,208,356	+		MIT1002_01100	0.69	+0.4
1,208,364	-		MIT1002_01100	0.70	-0.8
1,208,364	-		MIT1002_01100	0.70	-0.4
1,208,428	+		MIT1002_01100	0.73	+0.2
1,208,484	+		MIT1002_01100	0.75	+0.3
1,208,512	+		MIT1002_01100	0.77	+0.3
1,208,520	-		MIT1002_01100	0.77	-1.2
1,208,577	+		MIT1002_01100	0.80	+0.3
1,208,577	+		MIT1002_01100	0.80	-1.0
1,208,618	+		MIT1002_01100	0.82	+1.0
1,208,618	+		MIT1002_01100	0.82	+0.5
1,208,710	+		MIT1002_01100	0.86	-2.2
1,208,797	-				-1.1
1,208,855	-				-1.2
1,208,876	+				-0.4
1,208,894	-				-0.1
1,208,964	-				-0.2
1,209,093	+				-0.4
1,209,142	+				-1.2
1,209,150	-				-1.0
1,209,150	-				+0.4
1,209,167	-				-1.2
1,209,182	-		MIT1002_01101	0.11	-0.8
1,209,239	-		MIT1002_01101	0.15	-3.0
1,209,251	-		MIT1002_01101	0.15	-0.7
1,209,272	-		MIT1002_01101	0.17	-1.5
1,209,287	+		MIT1002_01101	0.18	-0.6
1,209,512	-		MIT1002_01101	0.34	+0.8
1,209,542	+		MIT1002_01101	0.36	-2.1
1,209,560	-		MIT1002_01101	0.37	-0.3
1,209,666	+		MIT1002_01101	0.45	+0.0
1,209,666	+		MIT1002_01101	0.45	-1.3
1,209,666	+		MIT1002_01101	0.45	-1.5
1,209,666	+		MIT1002_01101	0.45	-0.4
1,209,669	-		MIT1002_01101	0.45	-2.3
1,209,674	-		MIT1002_01101	0.45	-1.2
1,209,674	-		MIT1002_01101	0.45	-0.7
1,209,700	+		MIT1002_01101	0.47	-0.7
1,209,714	+		MIT1002_01101	0.48	+0.6
1,209,736	+		MIT1002_01101	0.50	-1.9
1,209,799	-		MIT1002_01101	0.54	-1.4
1,209,823	+		MIT1002_01101	0.56	+0.1
1,209,931	-		MIT1002_01101	0.64	-0.3
1,209,974	-		MIT1002_01101	0.67	-1.5