Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00882 and MIT1002_00883 overlap by 1 nucleotides MIT1002_00883 and MIT1002_00884 are separated by 17 nucleotides MIT1002_00884 and MIT1002_00885 are separated by 100 nucleotides MIT1002_00885 and MIT1002_00886 are separated by 46 nucleotides
MIT1002_00882: MIT1002_00882 - Sigma-W factor, at 974,599 to 975,129
_00882
MIT1002_00883: MIT1002_00883 - putative transmembrane transcriptional regulator (anti-sigma factor), at 975,129 to 975,887
_00883
MIT1002_00884: MIT1002_00884 - hypothetical protein, at 975,905 to 976,846
_00884
MIT1002_00885: MIT1002_00885 - hypothetical protein, at 976,947 to 977,474
_00885
MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195
_00886
Position (kb) 975
976
977 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 974.909 kb on - strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.949 kb on + strand, within MIT1002_00882 at 974.952 kb on - strand, within MIT1002_00882 at 974.957 kb on + strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.957 kb on - strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.971 kb on + strand, within MIT1002_00882 at 974.978 kb on + strand, within MIT1002_00882 at 975.087 kb on + strand at 975.097 kb on + strand at 975.150 kb on + strand at 975.300 kb on + strand, within MIT1002_00883 at 975.462 kb on - strand, within MIT1002_00883 at 975.574 kb on + strand, within MIT1002_00883 at 975.631 kb on + strand, within MIT1002_00883 at 975.655 kb on - strand, within MIT1002_00883 at 975.670 kb on - strand, within MIT1002_00883 at 975.782 kb on + strand, within MIT1002_00883 at 975.862 kb on + strand at 975.934 kb on + strand at 975.961 kb on + strand at 976.097 kb on + strand, within MIT1002_00884 at 976.194 kb on + strand, within MIT1002_00884 at 976.429 kb on + strand, within MIT1002_00884 at 976.479 kb on + strand, within MIT1002_00884 at 976.672 kb on - strand, within MIT1002_00884 at 976.867 kb on + strand at 976.968 kb on + strand at 976.999 kb on + strand at 976.999 kb on + strand at 977.024 kb on + strand, within MIT1002_00885 at 977.039 kb on - strand, within MIT1002_00885 at 977.111 kb on + strand, within MIT1002_00885 at 977.119 kb on - strand, within MIT1002_00885 at 977.119 kb on - strand, within MIT1002_00885 at 977.139 kb on - strand, within MIT1002_00885 at 977.186 kb on - strand, within MIT1002_00885 at 977.255 kb on - strand, within MIT1002_00885 at 977.275 kb on + strand, within MIT1002_00885 at 977.299 kb on - strand, within MIT1002_00885 at 977.301 kb on + strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.319 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.390 kb on - strand, within MIT1002_00885 at 977.431 kb on + strand at 977.639 kb on - strand, within MIT1002_00886 at 977.676 kb on - strand, within MIT1002_00886 at 977.686 kb on - strand, within MIT1002_00886 at 977.702 kb on + strand, within MIT1002_00886 at 977.707 kb on + strand, within MIT1002_00886 at 977.708 kb on + strand, within MIT1002_00886 at 977.713 kb on + strand, within MIT1002_00886 at 977.714 kb on - strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.778 kb on - strand, within MIT1002_00886 at 977.840 kb on - strand, within MIT1002_00886
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1 remove 974,909 - MIT1002_00882 0.58 +0.6 974,949 + MIT1002_00882 0.66 +2.0 974,949 + MIT1002_00882 0.66 +0.2 974,952 - MIT1002_00882 0.66 +0.9 974,957 + MIT1002_00882 0.67 +0.7 974,957 - MIT1002_00882 0.67 -0.5 974,957 - MIT1002_00882 0.67 -1.4 974,957 - MIT1002_00882 0.67 +0.6 974,971 + MIT1002_00882 0.70 -0.3 974,971 + MIT1002_00882 0.70 -2.5 974,978 + MIT1002_00882 0.71 -0.8 975,087 + -1.4 975,097 + +0.1 975,150 + -2.3 975,300 + MIT1002_00883 0.23 -1.6 975,462 - MIT1002_00883 0.44 -0.2 975,574 + MIT1002_00883 0.59 -1.6 975,631 + MIT1002_00883 0.66 -1.6 975,655 - MIT1002_00883 0.69 -2.9 975,670 - MIT1002_00883 0.71 +1.9 975,782 + MIT1002_00883 0.86 -0.9 975,862 + -0.3 975,934 + -2.4 975,961 + -1.9 976,097 + MIT1002_00884 0.20 -4.0 976,194 + MIT1002_00884 0.31 -2.3 976,429 + MIT1002_00884 0.56 -1.8 976,479 + MIT1002_00884 0.61 -0.4 976,672 - MIT1002_00884 0.81 -1.8 976,867 + -1.0 976,968 + -0.5 976,999 + -0.2 976,999 + +1.4 977,024 + MIT1002_00885 0.15 +0.6 977,039 - MIT1002_00885 0.17 +0.8 977,111 + MIT1002_00885 0.31 +0.3 977,119 - MIT1002_00885 0.33 +0.3 977,119 - MIT1002_00885 0.33 -0.7 977,139 - MIT1002_00885 0.36 +0.0 977,186 - MIT1002_00885 0.45 -0.8 977,255 - MIT1002_00885 0.58 +0.2 977,275 + MIT1002_00885 0.62 +0.2 977,299 - MIT1002_00885 0.67 -1.6 977,301 + MIT1002_00885 0.67 -1.1 977,309 - MIT1002_00885 0.69 +0.0 977,309 - MIT1002_00885 0.69 -0.2 977,309 - MIT1002_00885 0.69 +1.7 977,309 - MIT1002_00885 0.69 +0.2 977,319 + MIT1002_00885 0.70 +0.3 977,321 + MIT1002_00885 0.71 +0.7 977,321 + MIT1002_00885 0.71 -1.6 977,335 + MIT1002_00885 0.73 +0.5 977,335 + MIT1002_00885 0.73 -0.1 977,343 - MIT1002_00885 0.75 -1.7 977,343 - MIT1002_00885 0.75 -1.6 977,343 - MIT1002_00885 0.75 -2.1 977,390 - MIT1002_00885 0.84 -0.5 977,431 + +0.2 977,639 - MIT1002_00886 0.17 +0.8 977,676 - MIT1002_00886 0.23 -3.5 977,686 - MIT1002_00886 0.24 -0.6 977,702 + MIT1002_00886 0.27 -0.2 977,707 + MIT1002_00886 0.28 -0.6 977,708 + MIT1002_00886 0.28 +0.5 977,713 + MIT1002_00886 0.28 -0.5 977,714 - MIT1002_00886 0.29 +0.1 977,770 + MIT1002_00886 0.37 +1.8 977,770 + MIT1002_00886 0.37 +0.3 977,770 + MIT1002_00886 0.37 +0.9 977,778 - MIT1002_00886 0.38 +2.1 977,840 - MIT1002_00886 0.47 +0.9
Or see this region's nucleotide sequence