Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00849 and MIT1002_00850 are separated by 161 nucleotides MIT1002_00850 and MIT1002_00851 overlap by 19 nucleotides MIT1002_00851 and MIT1002_00853 are separated by 10 nucleotides
MIT1002_00849: MIT1002_00849 - bifunctional preprotein translocase subunit SecD/SecF, at 928,954 to 931,521
_00849
MIT1002_00850: MIT1002_00850 - potassium/proton antiporter, at 931,683 to 933,146
_00850
MIT1002_00851: MIT1002_00851 - hypothetical protein, at 933,128 to 933,592
_00851
MIT1002_00853: MIT1002_00853 - hypothetical protein, at 933,603 to 936,077
_00853
Position (kb) 931
932
933
934 Strain fitness (log2 ratio) -2
-1
0
1
2 at 930.719 kb on + strand, within MIT1002_00849 at 930.719 kb on + strand, within MIT1002_00849 at 930.727 kb on - strand, within MIT1002_00849 at 930.727 kb on - strand, within MIT1002_00849 at 930.727 kb on - strand, within MIT1002_00849 at 930.775 kb on - strand, within MIT1002_00849 at 930.829 kb on + strand, within MIT1002_00849 at 930.829 kb on + strand, within MIT1002_00849 at 930.837 kb on - strand, within MIT1002_00849 at 930.837 kb on - strand, within MIT1002_00849 at 930.837 kb on - strand, within MIT1002_00849 at 930.912 kb on - strand, within MIT1002_00849 at 930.951 kb on + strand, within MIT1002_00849 at 930.969 kb on - strand, within MIT1002_00849 at 930.978 kb on - strand, within MIT1002_00849 at 931.181 kb on + strand, within MIT1002_00849 at 931.255 kb on - strand, within MIT1002_00849 at 931.258 kb on + strand, within MIT1002_00849 at 931.258 kb on + strand, within MIT1002_00849 at 931.258 kb on + strand, within MIT1002_00849 at 931.266 kb on - strand at 931.266 kb on - strand at 931.271 kb on + strand at 931.285 kb on + strand at 931.285 kb on + strand at 931.285 kb on + strand at 931.285 kb on - strand at 931.285 kb on - strand at 931.287 kb on + strand at 931.287 kb on + strand at 931.293 kb on - strand at 931.293 kb on - strand at 931.295 kb on - strand at 931.389 kb on - strand at 931.407 kb on + strand at 931.415 kb on + strand at 931.415 kb on + strand at 931.415 kb on + strand at 931.423 kb on - strand at 931.423 kb on - strand at 931.423 kb on - strand at 931.491 kb on + strand at 931.499 kb on - strand at 931.499 kb on - strand at 931.499 kb on - strand at 931.548 kb on - strand at 931.603 kb on + strand at 931.624 kb on - strand at 931.685 kb on - strand at 931.685 kb on - strand at 931.685 kb on - strand at 931.693 kb on - strand at 931.704 kb on + strand at 931.712 kb on - strand at 931.712 kb on - strand at 931.714 kb on + strand at 931.714 kb on + strand at 931.722 kb on - strand at 931.722 kb on - strand at 931.722 kb on - strand at 931.722 kb on - strand at 931.767 kb on + strand at 931.776 kb on + strand at 932.023 kb on + strand, within MIT1002_00850 at 932.053 kb on + strand, within MIT1002_00850 at 932.089 kb on + strand, within MIT1002_00850 at 932.097 kb on - strand, within MIT1002_00850 at 932.221 kb on + strand, within MIT1002_00850 at 932.226 kb on - strand, within MIT1002_00850 at 932.230 kb on - strand, within MIT1002_00850 at 932.277 kb on + strand, within MIT1002_00850 at 932.329 kb on + strand, within MIT1002_00850 at 932.336 kb on - strand, within MIT1002_00850 at 932.343 kb on + strand, within MIT1002_00850 at 932.351 kb on - strand, within MIT1002_00850 at 932.366 kb on + strand, within MIT1002_00850 at 932.366 kb on - strand, within MIT1002_00850 at 932.383 kb on + strand, within MIT1002_00850 at 932.451 kb on + strand, within MIT1002_00850 at 932.469 kb on - strand, within MIT1002_00850 at 932.474 kb on + strand, within MIT1002_00850 at 932.474 kb on + strand, within MIT1002_00850 at 932.474 kb on + strand, within MIT1002_00850 at 932.482 kb on - strand, within MIT1002_00850 at 932.504 kb on + strand, within MIT1002_00850 at 932.715 kb on - strand, within MIT1002_00850 at 932.818 kb on + strand, within MIT1002_00850 at 932.828 kb on + strand, within MIT1002_00850 at 932.828 kb on + strand, within MIT1002_00850 at 932.912 kb on - strand, within MIT1002_00850 at 932.920 kb on - strand, within MIT1002_00850 at 932.931 kb on - strand, within MIT1002_00850 at 932.931 kb on - strand, within MIT1002_00850 at 932.940 kb on - strand, within MIT1002_00850 at 932.963 kb on + strand, within MIT1002_00850 at 932.971 kb on - strand, within MIT1002_00850 at 933.042 kb on - strand at 933.042 kb on - strand at 933.124 kb on + strand at 933.136 kb on + strand at 933.140 kb on + strand at 933.144 kb on - strand at 933.148 kb on + strand at 933.637 kb on + strand at 933.637 kb on + strand at 933.637 kb on + strand at 933.645 kb on - strand at 933.735 kb on + strand at 933.743 kb on - strand at 933.774 kb on + strand at 933.789 kb on + strand at 933.891 kb on + strand, within MIT1002_00853 at 933.896 kb on + strand, within MIT1002_00853 at 933.918 kb on - strand, within MIT1002_00853 at 933.918 kb on - strand, within MIT1002_00853 at 933.928 kb on - strand, within MIT1002_00853 at 933.954 kb on + strand, within MIT1002_00853 at 933.973 kb on - strand, within MIT1002_00853 at 934.041 kb on + strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.049 kb on - strand, within MIT1002_00853 at 934.111 kb on - strand, within MIT1002_00853 at 934.124 kb on + strand, within MIT1002_00853 at 934.145 kb on + strand, within MIT1002_00853
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1 remove 930,719 + MIT1002_00849 0.69 -0.0 930,719 + MIT1002_00849 0.69 +0.2 930,727 - MIT1002_00849 0.69 -0.1 930,727 - MIT1002_00849 0.69 -1.5 930,727 - MIT1002_00849 0.69 +0.5 930,775 - MIT1002_00849 0.71 -1.3 930,829 + MIT1002_00849 0.73 +0.6 930,829 + MIT1002_00849 0.73 -0.4 930,837 - MIT1002_00849 0.73 -0.2 930,837 - MIT1002_00849 0.73 +0.7 930,837 - MIT1002_00849 0.73 -0.5 930,912 - MIT1002_00849 0.76 +1.0 930,951 + MIT1002_00849 0.78 +1.3 930,969 - MIT1002_00849 0.78 +1.2 930,978 - MIT1002_00849 0.79 -1.4 931,181 + MIT1002_00849 0.87 -2.0 931,255 - MIT1002_00849 0.90 +0.8 931,258 + MIT1002_00849 0.90 -0.7 931,258 + MIT1002_00849 0.90 +0.9 931,258 + MIT1002_00849 0.90 +0.0 931,266 - -1.0 931,266 - -0.9 931,271 + +0.4 931,285 + +0.2 931,285 + +0.8 931,285 + -1.8 931,285 - +0.3 931,285 - -0.0 931,287 + -0.5 931,287 + +0.8 931,293 - +0.4 931,293 - -0.6 931,295 - +1.3 931,389 - -2.5 931,407 + -1.3 931,415 + +0.2 931,415 + -2.2 931,415 + -0.1 931,423 - -0.2 931,423 - -0.9 931,423 - -1.2 931,491 + -1.2 931,499 - +1.2 931,499 - -0.3 931,499 - +1.1 931,548 - -1.0 931,603 + -1.7 931,624 - +0.1 931,685 - +1.8 931,685 - -1.2 931,685 - +0.4 931,693 - +0.8 931,704 + +0.8 931,712 - +1.1 931,712 - -0.6 931,714 + +1.0 931,714 + -0.5 931,722 - +0.1 931,722 - +0.2 931,722 - +0.3 931,722 - +0.9 931,767 + +0.2 931,776 + +0.1 932,023 + MIT1002_00850 0.23 +0.4 932,053 + MIT1002_00850 0.25 -1.2 932,089 + MIT1002_00850 0.28 -0.1 932,097 - MIT1002_00850 0.28 +0.1 932,221 + MIT1002_00850 0.37 +0.2 932,226 - MIT1002_00850 0.37 -0.4 932,230 - MIT1002_00850 0.37 -0.8 932,277 + MIT1002_00850 0.41 +0.2 932,329 + MIT1002_00850 0.44 -2.0 932,336 - MIT1002_00850 0.45 +0.8 932,343 + MIT1002_00850 0.45 +1.2 932,351 - MIT1002_00850 0.46 +0.9 932,366 + MIT1002_00850 0.47 +0.6 932,366 - MIT1002_00850 0.47 -0.1 932,383 + MIT1002_00850 0.48 -1.2 932,451 + MIT1002_00850 0.52 +0.5 932,469 - MIT1002_00850 0.54 +0.9 932,474 + MIT1002_00850 0.54 -2.0 932,474 + MIT1002_00850 0.54 +1.0 932,474 + MIT1002_00850 0.54 +1.3 932,482 - MIT1002_00850 0.55 -1.1 932,504 + MIT1002_00850 0.56 -0.7 932,715 - MIT1002_00850 0.70 +0.9 932,818 + MIT1002_00850 0.78 +0.7 932,828 + MIT1002_00850 0.78 -0.7 932,828 + MIT1002_00850 0.78 +0.2 932,912 - MIT1002_00850 0.84 +0.7 932,920 - MIT1002_00850 0.84 +2.1 932,931 - MIT1002_00850 0.85 +0.1 932,931 - MIT1002_00850 0.85 +0.5 932,940 - MIT1002_00850 0.86 +0.8 932,963 + MIT1002_00850 0.87 +1.3 932,971 - MIT1002_00850 0.88 +1.9 933,042 - -0.4 933,042 - -0.1 933,124 + -0.4 933,136 + +0.6 933,140 + -0.2 933,144 - -0.3 933,148 + +0.2 933,637 + -0.0 933,637 + +0.4 933,637 + +0.2 933,645 - -0.2 933,735 + -1.2 933,743 - +0.7 933,774 + -0.5 933,789 + -0.5 933,891 + MIT1002_00853 0.12 -0.2 933,896 + MIT1002_00853 0.12 +0.6 933,918 - MIT1002_00853 0.13 +1.2 933,918 - MIT1002_00853 0.13 +0.1 933,928 - MIT1002_00853 0.13 +1.4 933,954 + MIT1002_00853 0.14 +0.3 933,973 - MIT1002_00853 0.15 +1.7 934,041 + MIT1002_00853 0.18 +1.6 934,049 - MIT1002_00853 0.18 +1.0 934,049 - MIT1002_00853 0.18 +0.5 934,049 - MIT1002_00853 0.18 -0.2 934,111 - MIT1002_00853 0.21 -0.1 934,124 + MIT1002_00853 0.21 -0.6 934,145 + MIT1002_00853 0.22 -0.5
Or see this region's nucleotide sequence