Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00732

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00731 and MIT1002_00732 are separated by 143 nucleotidesMIT1002_00732 and MIT1002_00733 are separated by 173 nucleotides MIT1002_00731: MIT1002_00731 - hypothetical protein, at 801,310 to 802,509 _00731 MIT1002_00732: MIT1002_00732 - Methyl-accepting chemotaxis protein 4, at 802,653 to 804,272 _00732 MIT1002_00733: MIT1002_00733 - Sigma-70, at 804,446 to 806,278 _00733 Position (kb) 802 803 804 805Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 801.686 kb on + strand, within MIT1002_00731at 801.704 kb on - strand, within MIT1002_00731at 801.737 kb on - strand, within MIT1002_00731at 801.737 kb on - strand, within MIT1002_00731at 801.759 kb on + strand, within MIT1002_00731at 801.767 kb on - strand, within MIT1002_00731at 801.769 kb on - strand, within MIT1002_00731at 801.787 kb on - strand, within MIT1002_00731at 801.789 kb on + strand, within MIT1002_00731at 801.789 kb on + strand, within MIT1002_00731at 801.789 kb on + strand, within MIT1002_00731at 801.810 kb on + strand, within MIT1002_00731at 801.968 kb on + strand, within MIT1002_00731at 802.020 kb on + strand, within MIT1002_00731at 802.094 kb on + strand, within MIT1002_00731at 802.147 kb on + strand, within MIT1002_00731at 802.147 kb on + strand, within MIT1002_00731at 802.182 kb on + strand, within MIT1002_00731at 802.361 kb on + strand, within MIT1002_00731at 802.376 kb on + strand, within MIT1002_00731at 802.432 kb on - strandat 802.469 kb on + strandat 802.477 kb on - strandat 802.479 kb on + strandat 802.479 kb on + strandat 802.511 kb on - strandat 802.768 kb on - strandat 802.848 kb on - strand, within MIT1002_00732at 802.892 kb on - strand, within MIT1002_00732at 802.960 kb on + strand, within MIT1002_00732at 803.022 kb on + strand, within MIT1002_00732at 803.029 kb on + strand, within MIT1002_00732at 803.038 kb on + strand, within MIT1002_00732at 803.039 kb on - strand, within MIT1002_00732at 803.084 kb on - strand, within MIT1002_00732at 803.102 kb on + strand, within MIT1002_00732at 803.112 kb on + strand, within MIT1002_00732at 803.153 kb on - strand, within MIT1002_00732at 803.156 kb on - strand, within MIT1002_00732at 803.197 kb on - strand, within MIT1002_00732at 803.429 kb on - strand, within MIT1002_00732at 803.473 kb on - strand, within MIT1002_00732at 803.499 kb on + strand, within MIT1002_00732at 803.499 kb on - strand, within MIT1002_00732at 803.515 kb on + strand, within MIT1002_00732at 803.526 kb on - strand, within MIT1002_00732at 803.587 kb on + strand, within MIT1002_00732at 803.587 kb on + strand, within MIT1002_00732at 803.589 kb on + strand, within MIT1002_00732at 803.595 kb on - strand, within MIT1002_00732at 803.633 kb on - strand, within MIT1002_00732at 803.681 kb on - strand, within MIT1002_00732at 803.777 kb on + strand, within MIT1002_00732at 803.785 kb on - strand, within MIT1002_00732at 803.788 kb on + strand, within MIT1002_00732at 803.793 kb on + strand, within MIT1002_00732at 803.852 kb on + strand, within MIT1002_00732at 803.852 kb on + strand, within MIT1002_00732at 803.852 kb on + strand, within MIT1002_00732at 803.852 kb on + strand, within MIT1002_00732at 803.852 kb on + strand, within MIT1002_00732at 803.890 kb on + strand, within MIT1002_00732at 803.898 kb on - strand, within MIT1002_00732at 803.935 kb on + strand, within MIT1002_00732at 803.953 kb on - strand, within MIT1002_00732at 803.997 kb on - strand, within MIT1002_00732at 804.018 kb on - strand, within MIT1002_00732at 804.066 kb on - strand, within MIT1002_00732at 804.098 kb on + strand, within MIT1002_00732at 804.103 kb on + strand, within MIT1002_00732at 804.111 kb on + strandat 804.119 kb on - strandat 804.121 kb on + strandat 804.195 kb on + strandat 804.234 kb on - strandat 804.265 kb on + strandat 804.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
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801,686 + MIT1002_00731 0.31 -0.5
801,704 - MIT1002_00731 0.33 -1.1
801,737 - MIT1002_00731 0.36 +0.3
801,737 - MIT1002_00731 0.36 +0.6
801,759 + MIT1002_00731 0.37 -0.4
801,767 - MIT1002_00731 0.38 +1.1
801,769 - MIT1002_00731 0.38 -0.2
801,787 - MIT1002_00731 0.40 -1.0
801,789 + MIT1002_00731 0.40 +0.1
801,789 + MIT1002_00731 0.40 -0.1
801,789 + MIT1002_00731 0.40 -2.8
801,810 + MIT1002_00731 0.42 -1.5
801,968 + MIT1002_00731 0.55 -1.4
802,020 + MIT1002_00731 0.59 -1.0
802,094 + MIT1002_00731 0.65 -2.0
802,147 + MIT1002_00731 0.70 -0.7
802,147 + MIT1002_00731 0.70 +1.8
802,182 + MIT1002_00731 0.73 +0.6
802,361 + MIT1002_00731 0.88 +0.6
802,376 + MIT1002_00731 0.89 +0.9
802,432 - +0.6
802,469 + -0.1
802,477 - -0.3
802,479 + -0.3
802,479 + -2.8
802,511 - +0.2
802,768 - -0.6
802,848 - MIT1002_00732 0.12 -0.5
802,892 - MIT1002_00732 0.15 -1.5
802,960 + MIT1002_00732 0.19 +0.3
803,022 + MIT1002_00732 0.23 -0.4
803,029 + MIT1002_00732 0.23 +1.5
803,038 + MIT1002_00732 0.24 +0.6
803,039 - MIT1002_00732 0.24 -0.7
803,084 - MIT1002_00732 0.27 +0.1
803,102 + MIT1002_00732 0.28 +0.6
803,112 + MIT1002_00732 0.28 +0.6
803,153 - MIT1002_00732 0.31 +0.8
803,156 - MIT1002_00732 0.31 +0.4
803,197 - MIT1002_00732 0.34 -0.4
803,429 - MIT1002_00732 0.48 +0.2
803,473 - MIT1002_00732 0.51 +0.8
803,499 + MIT1002_00732 0.52 -0.4
803,499 - MIT1002_00732 0.52 -0.4
803,515 + MIT1002_00732 0.53 -0.4
803,526 - MIT1002_00732 0.54 +0.3
803,587 + MIT1002_00732 0.58 -1.6
803,587 + MIT1002_00732 0.58 +0.6
803,589 + MIT1002_00732 0.58 -0.3
803,595 - MIT1002_00732 0.58 +2.0
803,633 - MIT1002_00732 0.60 -1.4
803,681 - MIT1002_00732 0.63 +0.7
803,777 + MIT1002_00732 0.69 -0.4
803,785 - MIT1002_00732 0.70 +0.6
803,788 + MIT1002_00732 0.70 +0.8
803,793 + MIT1002_00732 0.70 -0.6
803,852 + MIT1002_00732 0.74 +0.0
803,852 + MIT1002_00732 0.74 -0.6
803,852 + MIT1002_00732 0.74 -1.1
803,852 + MIT1002_00732 0.74 +0.9
803,852 + MIT1002_00732 0.74 -0.2
803,890 + MIT1002_00732 0.76 -1.2
803,898 - MIT1002_00732 0.77 -0.4
803,935 + MIT1002_00732 0.79 -1.9
803,953 - MIT1002_00732 0.80 -0.3
803,997 - MIT1002_00732 0.83 -0.1
804,018 - MIT1002_00732 0.84 +0.2
804,066 - MIT1002_00732 0.87 +0.4
804,098 + MIT1002_00732 0.89 -0.8
804,103 + MIT1002_00732 0.90 -2.1
804,111 + -1.0
804,119 - +0.9
804,121 + -0.8
804,195 + +0.3
804,234 - +0.5
804,265 + +0.3
804,385 + +0.8

Or see this region's nucleotide sequence