Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00657

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00655 and MIT1002_00656 are separated by 43 nucleotidesMIT1002_00656 and MIT1002_00657 are separated by 142 nucleotidesMIT1002_00657 and MIT1002_00658 are separated by 149 nucleotidesMIT1002_00658 and MIT1002_00659 are separated by 49 nucleotides MIT1002_00655: MIT1002_00655 - muropeptide transporter, at 711,960 to 713,306 _00655 MIT1002_00656: MIT1002_00656 - hypothetical protein, at 713,350 to 713,673 _00656 MIT1002_00657: MIT1002_00657 - hypothetical protein, at 713,816 to 714,703 _00657 MIT1002_00658: MIT1002_00658 - Ribosomal large subunit pseudouridine synthase A, at 714,853 to 715,569 _00658 MIT1002_00659: MIT1002_00659 - RNA polymerase-associated protein RapA, at 715,619 to 718,480 _00659 Position (kb) 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 712.817 kb on + strand, within MIT1002_00655at 712.859 kb on - strand, within MIT1002_00655at 712.896 kb on - strand, within MIT1002_00655at 712.944 kb on + strand, within MIT1002_00655at 712.967 kb on + strand, within MIT1002_00655at 712.976 kb on + strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 712.984 kb on - strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.001 kb on + strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.009 kb on - strand, within MIT1002_00655at 713.023 kb on + strand, within MIT1002_00655at 713.030 kb on - strand, within MIT1002_00655at 713.034 kb on + strand, within MIT1002_00655at 713.066 kb on + strand, within MIT1002_00655at 713.066 kb on + strand, within MIT1002_00655at 713.074 kb on - strand, within MIT1002_00655at 713.118 kb on + strand, within MIT1002_00655at 713.126 kb on - strand, within MIT1002_00655at 713.133 kb on + strand, within MIT1002_00655at 713.141 kb on - strand, within MIT1002_00655at 713.141 kb on - strand, within MIT1002_00655at 713.182 kb on + strandat 713.359 kb on + strandat 713.513 kb on + strand, within MIT1002_00656at 713.513 kb on + strand, within MIT1002_00656at 713.521 kb on - strand, within MIT1002_00656at 713.521 kb on - strand, within MIT1002_00656at 713.531 kb on - strand, within MIT1002_00656at 713.531 kb on - strand, within MIT1002_00656at 713.538 kb on - strand, within MIT1002_00656at 713.594 kb on - strand, within MIT1002_00656at 713.603 kb on - strand, within MIT1002_00656at 713.669 kb on + strandat 713.712 kb on - strandat 713.720 kb on - strandat 713.723 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.730 kb on + strandat 713.735 kb on + strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.738 kb on - strandat 713.742 kb on + strandat 713.742 kb on + strandat 713.993 kb on - strand, within MIT1002_00657at 713.996 kb on - strand, within MIT1002_00657at 713.999 kb on + strand, within MIT1002_00657at 714.046 kb on + strand, within MIT1002_00657at 714.122 kb on - strand, within MIT1002_00657at 714.125 kb on + strand, within MIT1002_00657at 714.159 kb on + strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.167 kb on - strand, within MIT1002_00657at 714.175 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.176 kb on - strand, within MIT1002_00657at 714.178 kb on + strand, within MIT1002_00657at 714.180 kb on + strand, within MIT1002_00657at 714.187 kb on + strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.195 kb on - strand, within MIT1002_00657at 714.204 kb on - strand, within MIT1002_00657at 714.247 kb on + strand, within MIT1002_00657at 714.294 kb on + strand, within MIT1002_00657at 714.302 kb on - strand, within MIT1002_00657at 714.326 kb on - strand, within MIT1002_00657at 714.338 kb on - strand, within MIT1002_00657at 714.377 kb on - strand, within MIT1002_00657at 714.524 kb on + strand, within MIT1002_00657at 714.525 kb on + strand, within MIT1002_00657at 714.525 kb on - strand, within MIT1002_00657at 714.532 kb on - strand, within MIT1002_00657at 714.578 kb on + strand, within MIT1002_00657at 714.586 kb on - strand, within MIT1002_00657at 714.622 kb on - strandat 714.645 kb on + strandat 714.645 kb on + strandat 714.653 kb on - strandat 714.653 kb on - strandat 714.678 kb on + strandat 714.678 kb on + strandat 714.685 kb on + strandat 714.711 kb on + strandat 714.728 kb on + strandat 714.780 kb on + strandat 714.788 kb on - strandat 714.970 kb on - strand, within MIT1002_00658at 714.996 kb on - strand, within MIT1002_00658at 715.068 kb on - strand, within MIT1002_00658at 715.098 kb on + strand, within MIT1002_00658at 715.137 kb on + strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.199 kb on - strand, within MIT1002_00658at 715.226 kb on + strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.234 kb on - strand, within MIT1002_00658at 715.235 kb on - strand, within MIT1002_00658at 715.236 kb on - strand, within MIT1002_00658at 715.251 kb on - strand, within MIT1002_00658at 715.366 kb on + strand, within MIT1002_00658at 715.380 kb on - strand, within MIT1002_00658at 715.381 kb on + strand, within MIT1002_00658at 715.383 kb on + strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.389 kb on - strand, within MIT1002_00658at 715.391 kb on - strand, within MIT1002_00658at 715.440 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.441 kb on + strand, within MIT1002_00658at 715.448 kb on - strand, within MIT1002_00658at 715.479 kb on + strand, within MIT1002_00658at 715.486 kb on - strand, within MIT1002_00658at 715.498 kb on + strandat 715.506 kb on - strandat 715.529 kb on + strandat 715.591 kb on - strandat 715.609 kb on - strandat 715.618 kb on - strandat 715.662 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
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712,817 + MIT1002_00655 0.64 +0.2
712,859 - MIT1002_00655 0.67 -1.0
712,896 - MIT1002_00655 0.69 +0.9
712,944 + MIT1002_00655 0.73 -0.9
712,967 + MIT1002_00655 0.75 +1.0
712,976 + MIT1002_00655 0.75 +0.4
712,984 - MIT1002_00655 0.76 +0.9
712,984 - MIT1002_00655 0.76 -0.4
712,984 - MIT1002_00655 0.76 +0.1
713,001 + MIT1002_00655 0.77 +0.4
713,001 + MIT1002_00655 0.77 -0.4
713,001 + MIT1002_00655 0.77 +0.2
713,001 + MIT1002_00655 0.77 +0.1
713,009 - MIT1002_00655 0.78 +0.0
713,009 - MIT1002_00655 0.78 +0.2
713,009 - MIT1002_00655 0.78 +0.2
713,009 - MIT1002_00655 0.78 -1.0
713,009 - MIT1002_00655 0.78 +0.5
713,023 + MIT1002_00655 0.79 -0.6
713,030 - MIT1002_00655 0.79 -1.3
713,034 + MIT1002_00655 0.80 +1.4
713,066 + MIT1002_00655 0.82 +0.6
713,066 + MIT1002_00655 0.82 -0.4
713,074 - MIT1002_00655 0.83 -1.0
713,118 + MIT1002_00655 0.86 +1.7
713,126 - MIT1002_00655 0.87 -0.5
713,133 + MIT1002_00655 0.87 +0.6
713,141 - MIT1002_00655 0.88 -0.3
713,141 - MIT1002_00655 0.88 -1.5
713,182 + +0.0
713,359 + +0.1
713,513 + MIT1002_00656 0.50 -1.7
713,513 + MIT1002_00656 0.50 +1.0
713,521 - MIT1002_00656 0.53 -0.6
713,521 - MIT1002_00656 0.53 -1.0
713,531 - MIT1002_00656 0.56 +0.6
713,531 - MIT1002_00656 0.56 -1.4
713,538 - MIT1002_00656 0.58 -2.5
713,594 - MIT1002_00656 0.75 -1.5
713,603 - MIT1002_00656 0.78 +0.0
713,669 + +0.6
713,712 - -1.4
713,720 - -0.3
713,723 + +1.0
713,730 + -0.5
713,730 + +0.1
713,730 + -1.1
713,730 + -2.1
713,735 + -0.4
713,738 - -0.7
713,738 - +0.1
713,738 - -1.1
713,738 - +0.7
713,738 - +0.5
713,738 - +0.2
713,738 - +1.3
713,738 - +0.2
713,738 - +0.0
713,738 - -1.2
713,742 + +1.1
713,742 + +0.4
713,993 - MIT1002_00657 0.20 +3.3
713,996 - MIT1002_00657 0.20 -0.5
713,999 + MIT1002_00657 0.21 -0.5
714,046 + MIT1002_00657 0.26 -0.2
714,122 - MIT1002_00657 0.34 -0.6
714,125 + MIT1002_00657 0.35 +0.1
714,159 + MIT1002_00657 0.39 +0.0
714,167 - MIT1002_00657 0.40 +0.1
714,167 - MIT1002_00657 0.40 +0.9
714,175 - MIT1002_00657 0.40 +0.8
714,176 - MIT1002_00657 0.41 -0.7
714,176 - MIT1002_00657 0.41 -0.5
714,178 + MIT1002_00657 0.41 +0.6
714,180 + MIT1002_00657 0.41 -0.3
714,187 + MIT1002_00657 0.42 +0.7
714,195 - MIT1002_00657 0.43 +0.5
714,195 - MIT1002_00657 0.43 -0.2
714,204 - MIT1002_00657 0.44 +0.1
714,247 + MIT1002_00657 0.49 +0.6
714,294 + MIT1002_00657 0.54 +0.1
714,302 - MIT1002_00657 0.55 -0.6
714,326 - MIT1002_00657 0.57 -0.5
714,338 - MIT1002_00657 0.59 -0.5
714,377 - MIT1002_00657 0.63 +0.9
714,524 + MIT1002_00657 0.80 -0.5
714,525 + MIT1002_00657 0.80 -0.5
714,525 - MIT1002_00657 0.80 -0.7
714,532 - MIT1002_00657 0.81 +0.4
714,578 + MIT1002_00657 0.86 -0.5
714,586 - MIT1002_00657 0.87 -1.7
714,622 - +0.6
714,645 + +0.4
714,645 + -0.8
714,653 - +0.4
714,653 - +0.4
714,678 + -1.5
714,678 + -0.3
714,685 + -1.8
714,711 + +0.1
714,728 + -1.9
714,780 + -0.2
714,788 - +1.2
714,970 - MIT1002_00658 0.16 +1.1
714,996 - MIT1002_00658 0.20 +0.0
715,068 - MIT1002_00658 0.30 -0.7
715,098 + MIT1002_00658 0.34 +0.2
715,137 + MIT1002_00658 0.40 -1.2
715,199 - MIT1002_00658 0.48 -0.1
715,199 - MIT1002_00658 0.48 -2.4
715,226 + MIT1002_00658 0.52 +0.5
715,234 - MIT1002_00658 0.53 -1.1
715,234 - MIT1002_00658 0.53 -0.0
715,235 - MIT1002_00658 0.53 -0.8
715,236 - MIT1002_00658 0.53 -0.8
715,251 - MIT1002_00658 0.56 -0.8
715,366 + MIT1002_00658 0.72 -0.4
715,380 - MIT1002_00658 0.74 +1.3
715,381 + MIT1002_00658 0.74 -2.9
715,383 + MIT1002_00658 0.74 +0.3
715,389 - MIT1002_00658 0.75 +0.0
715,389 - MIT1002_00658 0.75 +1.7
715,391 - MIT1002_00658 0.75 -0.7
715,440 + MIT1002_00658 0.82 -1.6
715,441 + MIT1002_00658 0.82 -0.0
715,441 + MIT1002_00658 0.82 -0.0
715,448 - MIT1002_00658 0.83 -1.5
715,479 + MIT1002_00658 0.87 -0.5
715,486 - MIT1002_00658 0.88 -1.0
715,498 + +0.4
715,506 - +0.0
715,529 + -1.1
715,591 - +0.1
715,609 - +0.4
715,618 - +0.2
715,662 + -0.1

Or see this region's nucleotide sequence