Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00128

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
136,870	-		MIT1002_00127	0.41	-0.1
136,888	+		MIT1002_00127	0.42	+0.9
136,896	-		MIT1002_00127	0.43	+0.5
136,896	-		MIT1002_00127	0.43	+0.1
136,914	-		MIT1002_00127	0.44	-1.0
136,932	+		MIT1002_00127	0.46	-2.7
136,935	-		MIT1002_00127	0.46	+0.2
136,958	-		MIT1002_00127	0.48	-1.5
136,974	-		MIT1002_00127	0.49	-0.3
136,975	+		MIT1002_00127	0.49	+0.2
137,052	-		MIT1002_00127	0.56	-0.3
137,054	+		MIT1002_00127	0.56	-0.2
137,054	+		MIT1002_00127	0.56	+0.3
137,062	-		MIT1002_00127	0.57	+0.1
137,062	-		MIT1002_00127	0.57	-0.8
137,062	-		MIT1002_00127	0.57	-0.7
137,062	-		MIT1002_00127	0.57	-0.5
137,062	-		MIT1002_00127	0.57	-0.7
137,062	-		MIT1002_00127	0.57	+1.0
137,064	+		MIT1002_00127	0.57	+0.5
137,072	-		MIT1002_00127	0.58	+1.2
137,072	-		MIT1002_00127	0.58	-0.2
137,072	-		MIT1002_00127	0.58	+0.5
137,086	-		MIT1002_00127	0.59	+1.5
137,111	+		MIT1002_00127	0.61	+0.7
137,221	-		MIT1002_00127	0.70	-0.2
137,225	+		MIT1002_00127	0.71	+1.5
137,230	+		MIT1002_00127	0.71	+0.9
137,230	+		MIT1002_00127	0.71	+0.3
137,238	-		MIT1002_00127	0.72	+3.0
137,279	-		MIT1002_00127	0.75	+0.9
137,281	+		MIT1002_00127	0.75	-0.0
137,290	+		MIT1002_00127	0.76	+0.8
137,290	+		MIT1002_00127	0.76	+1.1
137,298	-		MIT1002_00127	0.77	+0.1
137,298	-		MIT1002_00127	0.77	+0.6
137,310	+		MIT1002_00127	0.78	-0.9
137,310	+		MIT1002_00127	0.78	-0.5
137,318	-		MIT1002_00127	0.78	+0.7
137,318	-		MIT1002_00127	0.78	+1.1
137,318	-		MIT1002_00127	0.78	+0.2
137,381	+		MIT1002_00127	0.84	-0.7
137,403	-		MIT1002_00127	0.86	+0.3
137,403	-		MIT1002_00127	0.86	-0.1
137,403	-		MIT1002_00127	0.86	+0.3
137,531	+				-1.3
137,656	-				+0.3
137,738	+				+2.3
137,778	+				+0.6
137,778	+				-0.0
137,955	+		MIT1002_00128	0.12	+0.4
138,043	-		MIT1002_00128	0.17	+0.5
138,056	+		MIT1002_00128	0.18	+0.5
138,064	-		MIT1002_00128	0.19	+1.3
138,116	-		MIT1002_00128	0.22	-0.2
138,184	-		MIT1002_00128	0.26	-0.1
138,197	-		MIT1002_00128	0.27	+1.1
138,197	-		MIT1002_00128	0.27	+0.1
138,197	-		MIT1002_00128	0.27	+0.6
138,197	-		MIT1002_00128	0.27	+0.3
138,218	+		MIT1002_00128	0.29	+1.8
138,218	+		MIT1002_00128	0.29	-0.3
138,221	-		MIT1002_00128	0.29	+1.5
138,226	-		MIT1002_00128	0.29	+0.7
138,226	-		MIT1002_00128	0.29	+1.0
138,227	-		MIT1002_00128	0.29	-0.7
138,232	-		MIT1002_00128	0.30	+0.6
138,254	-		MIT1002_00128	0.31	+0.1
138,300	-		MIT1002_00128	0.34	+0.8
138,326	+		MIT1002_00128	0.36	-0.4
138,335	-		MIT1002_00128	0.36	+0.0
138,337	-		MIT1002_00128	0.36	-0.6
138,369	+		MIT1002_00128	0.38	+1.7
138,388	-		MIT1002_00128	0.40	-2.9
138,532	+		MIT1002_00128	0.49	+0.9
138,545	-		MIT1002_00128	0.50	-0.8
138,594	+		MIT1002_00128	0.53	-2.0
138,663	+		MIT1002_00128	0.57	+0.8
138,738	+		MIT1002_00128	0.62	+0.3
138,746	-		MIT1002_00128	0.62	+0.0
138,756	+		MIT1002_00128	0.63	+0.6
138,819	+		MIT1002_00128	0.67	-1.2
138,819	+		MIT1002_00128	0.67	-0.0
138,827	-		MIT1002_00128	0.68	-5.0
138,827	-		MIT1002_00128	0.68	+0.9
138,828	-		MIT1002_00128	0.68	+0.2
138,863	+		MIT1002_00128	0.70	+0.3
138,888	+		MIT1002_00128	0.72	-1.1
138,893	+		MIT1002_00128	0.72	-1.5
138,896	-		MIT1002_00128	0.72	-0.6
138,963	+		MIT1002_00128	0.76	+1.0
138,971	-		MIT1002_00128	0.77	-0.4
138,994	+		MIT1002_00128	0.78	+1.0
139,002	-		MIT1002_00128	0.79	+1.0
139,052	+		MIT1002_00128	0.82	+0.2
139,070	-		MIT1002_00128	0.83	-1.8
139,080	-		MIT1002_00128	0.84	-1.0
139,137	-		MIT1002_00128	0.88	-0.2
139,157	+		MIT1002_00128	0.89	+0.4
139,222	-				-0.6
139,244	+				+1.0
139,252	-				+0.7
139,287	+				+0.1
139,287	+				+0.1
139,287	+				-0.1
139,287	+				+0.2
139,287	+				-2.3
139,295	-				+0.3
139,295	-				+0.1
139,295	-				-0.2
139,295	-				-0.3
139,300	+				+1.5
139,335	+				-1.7
139,348	+				-0.0
139,361	+				-0.9
139,363	+				-1.2
139,363	+				-0.3
139,363	+				-0.3
139,371	-				+0.6
139,371	-				+0.0
139,371	-				+0.6
139,371	-				-1.0
139,371	-				-1.4
139,373	+				+0.4
139,373	+				-1.5
139,373	+				-1.4
139,373	+				-0.8
139,381	-				+1.2
139,406	+				-0.8
139,414	-				-0.5
139,414	-				+0.4
139,555	-		MIT1002_00129	0.21	-0.3
139,569	-		MIT1002_00129	0.22	+2.1
139,590	-		MIT1002_00129	0.25	+0.9
139,610	+		MIT1002_00129	0.27	-0.1
139,632	-		MIT1002_00129	0.29	+0.3
139,643	+		MIT1002_00129	0.31	+0.4
139,691	+		MIT1002_00129	0.36	-0.2
139,788	+		MIT1002_00129	0.47	+0.4
139,789	-		MIT1002_00129	0.47	-0.1
139,796	-		MIT1002_00129	0.48	+1.2
139,796	-		MIT1002_00129	0.48	+0.8
139,796	-		MIT1002_00129	0.48	+0.8
139,813	+		MIT1002_00129	0.50	+1.5
139,821	-		MIT1002_00129	0.51	+0.8
139,847	-		MIT1002_00129	0.54	-0.9
139,915	+		MIT1002_00129	0.61	-1.0
139,989	-		MIT1002_00129	0.70	+1.3
140,039	-		MIT1002_00129	0.75	-1.0
140,115	-		MIT1002_00129	0.84	-0.5
140,118	-		MIT1002_00129	0.84	+0.2
140,175	+				+0.1
140,175	+				-0.8
140,175	+				+1.7
140,175	+				+0.3
140,183	-				+0.3
140,183	-				+1.0
140,183	-				-1.2
140,183	-				-0.1
140,183	-				+0.2
140,212	+				-0.4
140,212	+				+0.1
140,212	+				-0.1
140,212	+				-0.0
140,220	-				+0.8
140,220	-				+0.8
140,220	-				-0.5
140,220	-				+0.5
140,220	-				-0.1
140,220	-				+0.5
140,220	-				-0.6
140,220	-				+1.2
140,277	-				-1.0