Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00127

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00125 and MIT1002_00126 are separated by 224 nucleotidesMIT1002_00126 and MIT1002_00127 are separated by 150 nucleotidesMIT1002_00127 and MIT1002_00128 are separated by 196 nucleotides MIT1002_00125: MIT1002_00125 - hypothetical protein, at 135,236 to 135,703 _00125 MIT1002_00126: MIT1002_00126 - hypothetical protein, at 135,928 to 136,236 _00126 MIT1002_00127: MIT1002_00127 - Blue light- and temperature-regulated antirepressor YcgF, at 136,387 to 137,574 _00127 MIT1002_00128: MIT1002_00128 - Diguanylate cyclase DosC, at 137,771 to 139,330 _00128 Position (kb) 136 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 135.432 kb on + strand, within MIT1002_00125at 135.447 kb on - strand, within MIT1002_00125at 135.459 kb on - strand, within MIT1002_00125at 135.465 kb on + strand, within MIT1002_00125at 135.473 kb on - strand, within MIT1002_00125at 135.557 kb on - strand, within MIT1002_00125at 135.573 kb on + strand, within MIT1002_00125at 135.595 kb on - strand, within MIT1002_00125at 135.597 kb on + strand, within MIT1002_00125at 135.680 kb on + strandat 135.688 kb on - strandat 135.688 kb on - strandat 135.820 kb on + strandat 135.829 kb on - strandat 135.861 kb on - strandat 135.867 kb on - strandat 135.867 kb on - strandat 135.896 kb on + strandat 135.918 kb on + strandat 136.046 kb on + strand, within MIT1002_00126at 136.054 kb on - strand, within MIT1002_00126at 136.074 kb on - strand, within MIT1002_00126at 136.092 kb on + strand, within MIT1002_00126at 136.095 kb on - strand, within MIT1002_00126at 136.149 kb on - strand, within MIT1002_00126at 136.186 kb on - strand, within MIT1002_00126at 136.308 kb on - strandat 136.352 kb on - strandat 136.526 kb on + strand, within MIT1002_00127at 136.747 kb on + strand, within MIT1002_00127at 136.870 kb on - strand, within MIT1002_00127at 136.888 kb on + strand, within MIT1002_00127at 136.896 kb on - strand, within MIT1002_00127at 136.896 kb on - strand, within MIT1002_00127at 136.914 kb on - strand, within MIT1002_00127at 136.932 kb on + strand, within MIT1002_00127at 136.935 kb on - strand, within MIT1002_00127at 136.958 kb on - strand, within MIT1002_00127at 136.974 kb on - strand, within MIT1002_00127at 136.975 kb on + strand, within MIT1002_00127at 137.052 kb on - strand, within MIT1002_00127at 137.054 kb on + strand, within MIT1002_00127at 137.054 kb on + strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.062 kb on - strand, within MIT1002_00127at 137.064 kb on + strand, within MIT1002_00127at 137.072 kb on - strand, within MIT1002_00127at 137.072 kb on - strand, within MIT1002_00127at 137.072 kb on - strand, within MIT1002_00127at 137.086 kb on - strand, within MIT1002_00127at 137.111 kb on + strand, within MIT1002_00127at 137.221 kb on - strand, within MIT1002_00127at 137.225 kb on + strand, within MIT1002_00127at 137.230 kb on + strand, within MIT1002_00127at 137.230 kb on + strand, within MIT1002_00127at 137.238 kb on - strand, within MIT1002_00127at 137.279 kb on - strand, within MIT1002_00127at 137.281 kb on + strand, within MIT1002_00127at 137.290 kb on + strand, within MIT1002_00127at 137.290 kb on + strand, within MIT1002_00127at 137.298 kb on - strand, within MIT1002_00127at 137.298 kb on - strand, within MIT1002_00127at 137.310 kb on + strand, within MIT1002_00127at 137.310 kb on + strand, within MIT1002_00127at 137.318 kb on - strand, within MIT1002_00127at 137.318 kb on - strand, within MIT1002_00127at 137.318 kb on - strand, within MIT1002_00127at 137.381 kb on + strand, within MIT1002_00127at 137.403 kb on - strand, within MIT1002_00127at 137.403 kb on - strand, within MIT1002_00127at 137.403 kb on - strand, within MIT1002_00127at 137.531 kb on + strandat 137.656 kb on - strandat 137.738 kb on + strandat 137.778 kb on + strandat 137.778 kb on + strandat 137.955 kb on + strand, within MIT1002_00128at 138.043 kb on - strand, within MIT1002_00128at 138.056 kb on + strand, within MIT1002_00128at 138.064 kb on - strand, within MIT1002_00128at 138.116 kb on - strand, within MIT1002_00128at 138.184 kb on - strand, within MIT1002_00128at 138.197 kb on - strand, within MIT1002_00128at 138.197 kb on - strand, within MIT1002_00128at 138.197 kb on - strand, within MIT1002_00128at 138.197 kb on - strand, within MIT1002_00128at 138.218 kb on + strand, within MIT1002_00128at 138.218 kb on + strand, within MIT1002_00128at 138.221 kb on - strand, within MIT1002_00128at 138.226 kb on - strand, within MIT1002_00128at 138.226 kb on - strand, within MIT1002_00128at 138.227 kb on - strand, within MIT1002_00128at 138.232 kb on - strand, within MIT1002_00128at 138.254 kb on - strand, within MIT1002_00128at 138.300 kb on - strand, within MIT1002_00128at 138.326 kb on + strand, within MIT1002_00128at 138.335 kb on - strand, within MIT1002_00128at 138.337 kb on - strand, within MIT1002_00128at 138.369 kb on + strand, within MIT1002_00128at 138.388 kb on - strand, within MIT1002_00128at 138.532 kb on + strand, within MIT1002_00128at 138.545 kb on - strand, within MIT1002_00128

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
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135,432 + MIT1002_00125 0.42 -0.7
135,447 - MIT1002_00125 0.45 -0.2
135,459 - MIT1002_00125 0.48 +0.3
135,465 + MIT1002_00125 0.49 -0.5
135,473 - MIT1002_00125 0.51 +0.4
135,557 - MIT1002_00125 0.69 -2.5
135,573 + MIT1002_00125 0.72 -0.5
135,595 - MIT1002_00125 0.77 -2.4
135,597 + MIT1002_00125 0.77 -0.4
135,680 + -2.9
135,688 - +0.5
135,688 - -1.2
135,820 + -0.1
135,829 - -0.3
135,861 - -3.0
135,867 - -1.5
135,867 - -0.9
135,896 + -1.6
135,918 + +0.5
136,046 + MIT1002_00126 0.38 -1.3
136,054 - MIT1002_00126 0.41 +0.3
136,074 - MIT1002_00126 0.47 -0.1
136,092 + MIT1002_00126 0.53 -1.7
136,095 - MIT1002_00126 0.54 -0.8
136,149 - MIT1002_00126 0.72 -1.8
136,186 - MIT1002_00126 0.83 -1.4
136,308 - +0.6
136,352 - -0.5
136,526 + MIT1002_00127 0.12 -0.8
136,747 + MIT1002_00127 0.30 +1.7
136,870 - MIT1002_00127 0.41 -0.1
136,888 + MIT1002_00127 0.42 +0.9
136,896 - MIT1002_00127 0.43 +0.5
136,896 - MIT1002_00127 0.43 +0.1
136,914 - MIT1002_00127 0.44 -1.0
136,932 + MIT1002_00127 0.46 -2.7
136,935 - MIT1002_00127 0.46 +0.2
136,958 - MIT1002_00127 0.48 -1.5
136,974 - MIT1002_00127 0.49 -0.3
136,975 + MIT1002_00127 0.49 +0.2
137,052 - MIT1002_00127 0.56 -0.3
137,054 + MIT1002_00127 0.56 -0.2
137,054 + MIT1002_00127 0.56 +0.3
137,062 - MIT1002_00127 0.57 +0.1
137,062 - MIT1002_00127 0.57 -0.8
137,062 - MIT1002_00127 0.57 -0.7
137,062 - MIT1002_00127 0.57 -0.5
137,062 - MIT1002_00127 0.57 -0.7
137,062 - MIT1002_00127 0.57 +1.0
137,064 + MIT1002_00127 0.57 +0.5
137,072 - MIT1002_00127 0.58 +1.2
137,072 - MIT1002_00127 0.58 -0.2
137,072 - MIT1002_00127 0.58 +0.5
137,086 - MIT1002_00127 0.59 +1.5
137,111 + MIT1002_00127 0.61 +0.7
137,221 - MIT1002_00127 0.70 -0.2
137,225 + MIT1002_00127 0.71 +1.5
137,230 + MIT1002_00127 0.71 +0.9
137,230 + MIT1002_00127 0.71 +0.3
137,238 - MIT1002_00127 0.72 +3.0
137,279 - MIT1002_00127 0.75 +0.9
137,281 + MIT1002_00127 0.75 -0.0
137,290 + MIT1002_00127 0.76 +0.8
137,290 + MIT1002_00127 0.76 +1.1
137,298 - MIT1002_00127 0.77 +0.1
137,298 - MIT1002_00127 0.77 +0.6
137,310 + MIT1002_00127 0.78 -0.9
137,310 + MIT1002_00127 0.78 -0.5
137,318 - MIT1002_00127 0.78 +0.7
137,318 - MIT1002_00127 0.78 +1.1
137,318 - MIT1002_00127 0.78 +0.2
137,381 + MIT1002_00127 0.84 -0.7
137,403 - MIT1002_00127 0.86 +0.3
137,403 - MIT1002_00127 0.86 -0.1
137,403 - MIT1002_00127 0.86 +0.3
137,531 + -1.3
137,656 - +0.3
137,738 + +2.3
137,778 + +0.6
137,778 + -0.0
137,955 + MIT1002_00128 0.12 +0.4
138,043 - MIT1002_00128 0.17 +0.5
138,056 + MIT1002_00128 0.18 +0.5
138,064 - MIT1002_00128 0.19 +1.3
138,116 - MIT1002_00128 0.22 -0.2
138,184 - MIT1002_00128 0.26 -0.1
138,197 - MIT1002_00128 0.27 +1.1
138,197 - MIT1002_00128 0.27 +0.1
138,197 - MIT1002_00128 0.27 +0.6
138,197 - MIT1002_00128 0.27 +0.3
138,218 + MIT1002_00128 0.29 +1.8
138,218 + MIT1002_00128 0.29 -0.3
138,221 - MIT1002_00128 0.29 +1.5
138,226 - MIT1002_00128 0.29 +0.7
138,226 - MIT1002_00128 0.29 +1.0
138,227 - MIT1002_00128 0.29 -0.7
138,232 - MIT1002_00128 0.30 +0.6
138,254 - MIT1002_00128 0.31 +0.1
138,300 - MIT1002_00128 0.34 +0.8
138,326 + MIT1002_00128 0.36 -0.4
138,335 - MIT1002_00128 0.36 +0.0
138,337 - MIT1002_00128 0.36 -0.6
138,369 + MIT1002_00128 0.38 +1.7
138,388 - MIT1002_00128 0.40 -2.9
138,532 + MIT1002_00128 0.49 +0.9
138,545 - MIT1002_00128 0.50 -0.8

Or see this region's nucleotide sequence