Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00119

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00118 and MIT1002_00119 are separated by 114 nucleotidesMIT1002_00119 and MIT1002_00120 are separated by 870 nucleotides MIT1002_00118: MIT1002_00118 - N-methyltryptophan oxidase, at 127,558 to 128,739 _00118 MIT1002_00119: MIT1002_00119 - Abortive infection bacteriophage resistance protein, at 128,854 to 129,882 _00119 MIT1002_00120: MIT1002_00120 - hypothetical protein, at 130,753 to 131,040 _00120 Position (kb) 128 129 130Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 127.855 kb on - strand, within MIT1002_00118at 127.937 kb on - strand, within MIT1002_00118at 127.947 kb on + strand, within MIT1002_00118at 128.004 kb on + strand, within MIT1002_00118at 128.048 kb on + strand, within MIT1002_00118at 128.055 kb on + strand, within MIT1002_00118at 128.131 kb on - strand, within MIT1002_00118at 128.131 kb on - strand, within MIT1002_00118at 128.155 kb on + strand, within MIT1002_00118at 128.175 kb on + strand, within MIT1002_00118at 128.183 kb on - strand, within MIT1002_00118at 128.183 kb on - strand, within MIT1002_00118at 128.262 kb on - strand, within MIT1002_00118at 128.264 kb on + strand, within MIT1002_00118at 128.272 kb on - strand, within MIT1002_00118at 128.272 kb on - strand, within MIT1002_00118at 128.299 kb on - strand, within MIT1002_00118at 128.423 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.428 kb on + strand, within MIT1002_00118at 128.435 kb on + strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.436 kb on - strand, within MIT1002_00118at 128.443 kb on - strand, within MIT1002_00118at 128.443 kb on - strand, within MIT1002_00118at 128.445 kb on + strand, within MIT1002_00118at 128.493 kb on + strand, within MIT1002_00118at 128.513 kb on + strand, within MIT1002_00118at 128.579 kb on - strand, within MIT1002_00118at 128.606 kb on - strand, within MIT1002_00118at 128.635 kb on + strandat 128.635 kb on + strandat 128.635 kb on + strandat 128.643 kb on - strandat 128.699 kb on - strandat 128.797 kb on + strandat 128.825 kb on + strandat 128.926 kb on + strandat 128.927 kb on + strandat 128.935 kb on - strandat 128.969 kb on + strand, within MIT1002_00119at 128.969 kb on + strand, within MIT1002_00119at 128.969 kb on + strand, within MIT1002_00119at 129.037 kb on - strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.045 kb on + strand, within MIT1002_00119at 129.053 kb on - strand, within MIT1002_00119at 129.053 kb on - strand, within MIT1002_00119at 129.058 kb on - strand, within MIT1002_00119at 129.099 kb on - strand, within MIT1002_00119at 129.132 kb on - strand, within MIT1002_00119at 129.172 kb on + strand, within MIT1002_00119at 129.191 kb on - strand, within MIT1002_00119at 129.260 kb on + strand, within MIT1002_00119at 129.479 kb on + strand, within MIT1002_00119at 129.479 kb on + strand, within MIT1002_00119at 129.497 kb on - strand, within MIT1002_00119at 129.528 kb on - strand, within MIT1002_00119at 129.572 kb on + strand, within MIT1002_00119at 129.577 kb on + strand, within MIT1002_00119at 129.580 kb on - strand, within MIT1002_00119at 129.660 kb on + strand, within MIT1002_00119at 129.661 kb on - strand, within MIT1002_00119at 129.756 kb on + strand, within MIT1002_00119at 129.819 kb on - strandat 129.880 kb on + strandat 130.093 kb on + strandat 130.148 kb on + strandat 130.148 kb on + strandat 130.156 kb on - strandat 130.161 kb on - strandat 130.163 kb on + strandat 130.214 kb on - strandat 130.219 kb on - strandat 130.305 kb on + strandat 130.307 kb on + strandat 130.419 kb on - strandat 130.432 kb on - strandat 130.476 kb on + strandat 130.481 kb on + strandat 130.484 kb on - strandat 130.518 kb on + strandat 130.518 kb on + strandat 130.531 kb on + strandat 130.533 kb on + strandat 130.540 kb on + strandat 130.540 kb on + strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.548 kb on - strandat 130.598 kb on + strandat 130.600 kb on + strandat 130.608 kb on - strandat 130.639 kb on + strandat 130.707 kb on + strandat 130.712 kb on + strandat 130.737 kb on + strandat 130.745 kb on - strandat 130.749 kb on + strandat 130.749 kb on + strandat 130.757 kb on - strandat 130.767 kb on - strandat 130.800 kb on + strand, within MIT1002_00120at 130.800 kb on + strand, within MIT1002_00120at 130.805 kb on + strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.808 kb on - strand, within MIT1002_00120at 130.818 kb on - strand, within MIT1002_00120at 130.818 kb on - strand, within MIT1002_00120at 130.823 kb on - strand, within MIT1002_00120at 130.876 kb on - strand, within MIT1002_00120at 130.878 kb on - strand, within MIT1002_00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
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127,855 - MIT1002_00118 0.25 +0.3
127,937 - MIT1002_00118 0.32 -0.9
127,947 + MIT1002_00118 0.33 -1.3
128,004 + MIT1002_00118 0.38 -1.5
128,048 + MIT1002_00118 0.41 +0.4
128,055 + MIT1002_00118 0.42 +0.2
128,131 - MIT1002_00118 0.48 +0.6
128,131 - MIT1002_00118 0.48 +0.3
128,155 + MIT1002_00118 0.51 -0.6
128,175 + MIT1002_00118 0.52 -0.3
128,183 - MIT1002_00118 0.53 -0.5
128,183 - MIT1002_00118 0.53 +0.5
128,262 - MIT1002_00118 0.60 +0.5
128,264 + MIT1002_00118 0.60 +1.5
128,272 - MIT1002_00118 0.60 -1.0
128,272 - MIT1002_00118 0.60 -1.4
128,299 - MIT1002_00118 0.63 +1.5
128,423 + MIT1002_00118 0.73 +0.4
128,428 + MIT1002_00118 0.74 -2.6
128,428 + MIT1002_00118 0.74 -0.1
128,428 + MIT1002_00118 0.74 -0.5
128,435 + MIT1002_00118 0.74 -0.0
128,436 - MIT1002_00118 0.74 -0.1
128,436 - MIT1002_00118 0.74 -0.0
128,436 - MIT1002_00118 0.74 +0.3
128,443 - MIT1002_00118 0.75 +0.2
128,443 - MIT1002_00118 0.75 -1.3
128,445 + MIT1002_00118 0.75 -0.2
128,493 + MIT1002_00118 0.79 +0.7
128,513 + MIT1002_00118 0.81 +1.0
128,579 - MIT1002_00118 0.86 +0.6
128,606 - MIT1002_00118 0.89 -0.1
128,635 + +0.8
128,635 + +0.1
128,635 + -0.6
128,643 - -0.4
128,699 - +0.4
128,797 + -0.3
128,825 + +1.3
128,926 + -0.1
128,927 + -0.3
128,935 - +1.9
128,969 + MIT1002_00119 0.11 -0.3
128,969 + MIT1002_00119 0.11 +0.3
128,969 + MIT1002_00119 0.11 -0.7
129,037 - MIT1002_00119 0.18 -0.2
129,045 + MIT1002_00119 0.19 +0.6
129,045 + MIT1002_00119 0.19 +0.3
129,045 + MIT1002_00119 0.19 -1.7
129,045 + MIT1002_00119 0.19 +1.1
129,053 - MIT1002_00119 0.19 -0.8
129,053 - MIT1002_00119 0.19 -0.7
129,058 - MIT1002_00119 0.20 -2.4
129,099 - MIT1002_00119 0.24 -1.0
129,132 - MIT1002_00119 0.27 +0.1
129,172 + MIT1002_00119 0.31 +1.7
129,191 - MIT1002_00119 0.33 -0.1
129,260 + MIT1002_00119 0.39 -0.4
129,479 + MIT1002_00119 0.61 -0.7
129,479 + MIT1002_00119 0.61 -3.5
129,497 - MIT1002_00119 0.62 -4.0
129,528 - MIT1002_00119 0.66 -1.1
129,572 + MIT1002_00119 0.70 +0.9
129,577 + MIT1002_00119 0.70 -0.8
129,580 - MIT1002_00119 0.71 +0.1
129,660 + MIT1002_00119 0.78 -0.0
129,661 - MIT1002_00119 0.78 +0.1
129,756 + MIT1002_00119 0.88 +0.4
129,819 - -1.3
129,880 + +0.0
130,093 + +0.1
130,148 + -0.5
130,148 + +0.9
130,156 - -0.2
130,161 - +0.4
130,163 + +0.5
130,214 - -1.2
130,219 - +0.3
130,305 + -2.7
130,307 + -0.1
130,419 - +0.4
130,432 - -0.8
130,476 + +0.3
130,481 + -1.3
130,484 - +0.8
130,518 + +0.9
130,518 + -0.2
130,531 + +0.6
130,533 + -0.7
130,540 + -1.1
130,540 + -0.7
130,548 - +0.6
130,548 - -0.7
130,548 - +0.7
130,548 - +0.2
130,548 - +0.3
130,598 + -0.1
130,600 + -0.9
130,608 - -0.5
130,639 + -0.0
130,707 + +0.2
130,712 + +0.3
130,737 + -0.2
130,745 - +0.4
130,749 + -0.3
130,749 + +1.5
130,757 - -0.8
130,767 - +0.7
130,800 + MIT1002_00120 0.16 -1.4
130,800 + MIT1002_00120 0.16 +0.1
130,805 + MIT1002_00120 0.18 -0.3
130,808 - MIT1002_00120 0.19 +0.2
130,808 - MIT1002_00120 0.19 -0.7
130,808 - MIT1002_00120 0.19 -0.4
130,808 - MIT1002_00120 0.19 -0.4
130,808 - MIT1002_00120 0.19 -0.2
130,818 - MIT1002_00120 0.23 -0.3
130,818 - MIT1002_00120 0.23 +0.6
130,823 - MIT1002_00120 0.24 +0.5
130,876 - MIT1002_00120 0.43 +2.1
130,878 - MIT1002_00120 0.43 +0.3

Or see this region's nucleotide sequence