Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00038

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00036 and MIT1002_00037 are separated by 140 nucleotidesMIT1002_00037 and MIT1002_00038 are separated by 136 nucleotidesMIT1002_00038 and MIT1002_00039 overlap by 20 nucleotidesMIT1002_00039 and MIT1002_00040 are separated by 142 nucleotides MIT1002_00036: MIT1002_00036 - Transposase, at 40,196 to 40,711 _00036 MIT1002_00037: MIT1002_00037 - Lipid A 3-O-deacylase (PagL), at 40,852 to 41,382 _00037 MIT1002_00038: MIT1002_00038 - hypothetical protein, at 41,519 to 42,349 _00038 MIT1002_00039: MIT1002_00039 - hypothetical protein, at 42,330 to 43,121 _00039 MIT1002_00040: MIT1002_00040 - Error-prone DNA polymerase, at 43,264 to 46,353 _00040 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 40.802 kb on + strandat 40.810 kb on - strandat 40.865 kb on + strandat 40.873 kb on - strandat 40.873 kb on - strandat 40.884 kb on + strandat 40.977 kb on + strand, within MIT1002_00037at 41.002 kb on + strand, within MIT1002_00037at 41.051 kb on + strand, within MIT1002_00037at 41.104 kb on - strand, within MIT1002_00037at 41.147 kb on - strand, within MIT1002_00037at 41.210 kb on - strand, within MIT1002_00037at 41.233 kb on - strand, within MIT1002_00037at 41.481 kb on + strandat 41.509 kb on + strandat 41.570 kb on - strandat 41.652 kb on - strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.680 kb on + strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.688 kb on - strand, within MIT1002_00038at 41.714 kb on + strand, within MIT1002_00038at 41.722 kb on + strand, within MIT1002_00038at 41.723 kb on + strand, within MIT1002_00038at 41.723 kb on + strand, within MIT1002_00038at 41.731 kb on - strand, within MIT1002_00038at 41.731 kb on - strand, within MIT1002_00038at 41.747 kb on + strand, within MIT1002_00038at 41.767 kb on - strand, within MIT1002_00038at 41.781 kb on + strand, within MIT1002_00038at 41.802 kb on - strand, within MIT1002_00038at 41.827 kb on + strand, within MIT1002_00038at 41.870 kb on - strand, within MIT1002_00038at 42.017 kb on - strand, within MIT1002_00038at 42.026 kb on - strand, within MIT1002_00038at 42.040 kb on + strand, within MIT1002_00038at 42.099 kb on + strand, within MIT1002_00038at 42.107 kb on + strand, within MIT1002_00038at 42.174 kb on + strand, within MIT1002_00038at 42.174 kb on + strand, within MIT1002_00038at 42.177 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.187 kb on - strand, within MIT1002_00038at 42.249 kb on - strand, within MIT1002_00038at 42.254 kb on + strand, within MIT1002_00038at 42.299 kb on + strandat 42.367 kb on + strandat 42.392 kb on + strandat 42.397 kb on - strandat 42.561 kb on + strand, within MIT1002_00039at 42.574 kb on - strand, within MIT1002_00039at 42.586 kb on + strand, within MIT1002_00039at 42.608 kb on + strand, within MIT1002_00039at 42.609 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.633 kb on + strand, within MIT1002_00039at 42.647 kb on - strand, within MIT1002_00039at 42.718 kb on - strand, within MIT1002_00039at 42.725 kb on - strand, within MIT1002_00039at 42.773 kb on - strand, within MIT1002_00039at 42.791 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.801 kb on + strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.809 kb on - strand, within MIT1002_00039at 42.846 kb on + strand, within MIT1002_00039at 42.889 kb on + strand, within MIT1002_00039at 42.943 kb on - strand, within MIT1002_00039at 43.103 kb on + strandat 43.103 kb on + strandat 43.103 kb on + strandat 43.111 kb on - strandat 43.111 kb on - strandat 43.120 kb on + strandat 43.128 kb on - strandat 43.128 kb on - strandat 43.222 kb on + strandat 43.230 kb on - strandat 43.255 kb on + strandat 43.308 kb on - strandat 43.309 kb on - strandat 43.316 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 1
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40,802 + -0.5
40,810 - +0.3
40,865 + +0.3
40,873 - +0.3
40,873 - -0.5
40,884 + +0.6
40,977 + MIT1002_00037 0.24 +0.7
41,002 + MIT1002_00037 0.28 -0.1
41,051 + MIT1002_00037 0.37 -0.9
41,104 - MIT1002_00037 0.47 +0.5
41,147 - MIT1002_00037 0.56 -0.2
41,210 - MIT1002_00037 0.67 -0.5
41,233 - MIT1002_00037 0.72 -0.1
41,481 + +0.5
41,509 + +0.3
41,570 - +0.3
41,652 - MIT1002_00038 0.16 +0.4
41,680 + MIT1002_00038 0.19 +0.3
41,680 + MIT1002_00038 0.19 +1.1
41,680 + MIT1002_00038 0.19 -1.3
41,680 + MIT1002_00038 0.19 +0.3
41,680 + MIT1002_00038 0.19 +0.8
41,680 + MIT1002_00038 0.19 +0.4
41,680 + MIT1002_00038 0.19 -0.5
41,680 + MIT1002_00038 0.19 -0.0
41,680 + MIT1002_00038 0.19 -0.7
41,680 + MIT1002_00038 0.19 -1.9
41,688 - MIT1002_00038 0.20 -1.4
41,688 - MIT1002_00038 0.20 +0.2
41,688 - MIT1002_00038 0.20 +0.4
41,688 - MIT1002_00038 0.20 -1.1
41,688 - MIT1002_00038 0.20 -0.3
41,688 - MIT1002_00038 0.20 -0.1
41,714 + MIT1002_00038 0.23 +0.3
41,722 + MIT1002_00038 0.24 -0.2
41,723 + MIT1002_00038 0.25 +0.1
41,723 + MIT1002_00038 0.25 -2.0
41,731 - MIT1002_00038 0.26 +1.1
41,731 - MIT1002_00038 0.26 +0.0
41,747 + MIT1002_00038 0.27 -1.9
41,767 - MIT1002_00038 0.30 -0.6
41,781 + MIT1002_00038 0.32 -0.6
41,802 - MIT1002_00038 0.34 -2.0
41,827 + MIT1002_00038 0.37 -0.1
41,870 - MIT1002_00038 0.42 +0.1
42,017 - MIT1002_00038 0.60 +0.5
42,026 - MIT1002_00038 0.61 +1.8
42,040 + MIT1002_00038 0.63 +0.3
42,099 + MIT1002_00038 0.70 +0.8
42,107 + MIT1002_00038 0.71 +0.4
42,174 + MIT1002_00038 0.79 -1.0
42,174 + MIT1002_00038 0.79 +1.6
42,177 - MIT1002_00038 0.79 +0.1
42,187 - MIT1002_00038 0.80 +0.3
42,187 - MIT1002_00038 0.80 -0.1
42,187 - MIT1002_00038 0.80 +0.1
42,249 - MIT1002_00038 0.88 +0.2
42,254 + MIT1002_00038 0.88 -1.9
42,299 + +0.0
42,367 + -0.7
42,392 + -0.1
42,397 - +0.3
42,561 + MIT1002_00039 0.29 -0.1
42,574 - MIT1002_00039 0.31 -0.4
42,586 + MIT1002_00039 0.32 -0.2
42,608 + MIT1002_00039 0.35 -0.4
42,609 + MIT1002_00039 0.35 +0.5
42,633 + MIT1002_00039 0.38 +0.3
42,633 + MIT1002_00039 0.38 +0.6
42,633 + MIT1002_00039 0.38 +0.6
42,647 - MIT1002_00039 0.40 -0.4
42,718 - MIT1002_00039 0.49 +1.4
42,725 - MIT1002_00039 0.50 +0.0
42,773 - MIT1002_00039 0.56 +0.4
42,791 + MIT1002_00039 0.58 -1.2
42,801 + MIT1002_00039 0.59 -1.0
42,801 + MIT1002_00039 0.59 +0.1
42,801 + MIT1002_00039 0.59 +0.4
42,801 + MIT1002_00039 0.59 -0.8
42,801 + MIT1002_00039 0.59 +0.4
42,809 - MIT1002_00039 0.60 +0.2
42,809 - MIT1002_00039 0.60 -0.6
42,809 - MIT1002_00039 0.60 +0.3
42,809 - MIT1002_00039 0.60 +1.1
42,809 - MIT1002_00039 0.60 -0.6
42,809 - MIT1002_00039 0.60 -0.0
42,809 - MIT1002_00039 0.60 -0.7
42,846 + MIT1002_00039 0.65 -0.1
42,889 + MIT1002_00039 0.71 -1.7
42,943 - MIT1002_00039 0.77 +1.7
43,103 + -0.5
43,103 + -0.0
43,103 + -0.6
43,111 - -0.7
43,111 - +0.0
43,120 + +0.5
43,128 - -1.0
43,128 - +0.2
43,222 + +0.4
43,230 - +0.5
43,255 + +0.9
43,308 - -0.1
43,309 - +0.4
43,316 + -0.4

Or see this region's nucleotide sequence