Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41340

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41335 and QEN71_RS41340 are separated by 254 nucleotidesQEN71_RS41340 and QEN71_RS41345 are separated by 171 nucleotides QEN71_RS41335: QEN71_RS41335 - aspartate dehydrogenase, at 342,653 to 343,459 _RS41335 QEN71_RS41340: QEN71_RS41340 - porin, at 343,714 to 344,886 _RS41340 QEN71_RS41345: QEN71_RS41345 - branched-chain amino acid ABC transporter substrate-binding protein, at 345,058 to 346,209 _RS41345 Position (kb) 343 344 345Strain fitness (log2 ratio) -2 -1 0 1 2at 342.776 kb on + strand, within QEN71_RS41335at 342.901 kb on + strand, within QEN71_RS41335at 343.079 kb on + strand, within QEN71_RS41335at 343.079 kb on + strand, within QEN71_RS41335at 343.079 kb on + strand, within QEN71_RS41335at 343.080 kb on - strand, within QEN71_RS41335at 343.358 kb on - strand, within QEN71_RS41335at 343.487 kb on + strandat 343.488 kb on - strandat 343.501 kb on + strandat 343.501 kb on + strandat 343.501 kb on + strandat 343.647 kb on - strandat 343.760 kb on - strandat 343.898 kb on + strand, within QEN71_RS41340at 343.899 kb on - strand, within QEN71_RS41340at 343.899 kb on - strand, within QEN71_RS41340at 344.032 kb on - strand, within QEN71_RS41340at 344.056 kb on + strand, within QEN71_RS41340at 344.059 kb on + strand, within QEN71_RS41340at 344.060 kb on - strand, within QEN71_RS41340at 344.060 kb on - strand, within QEN71_RS41340at 344.080 kb on - strand, within QEN71_RS41340at 344.142 kb on + strand, within QEN71_RS41340at 344.149 kb on + strand, within QEN71_RS41340at 344.168 kb on + strand, within QEN71_RS41340at 344.174 kb on - strand, within QEN71_RS41340at 344.174 kb on - strand, within QEN71_RS41340at 344.191 kb on + strand, within QEN71_RS41340at 344.192 kb on - strand, within QEN71_RS41340at 344.215 kb on + strand, within QEN71_RS41340at 344.215 kb on + strand, within QEN71_RS41340at 344.463 kb on + strand, within QEN71_RS41340at 344.498 kb on - strand, within QEN71_RS41340at 344.512 kb on + strand, within QEN71_RS41340at 344.512 kb on + strand, within QEN71_RS41340at 344.513 kb on - strand, within QEN71_RS41340at 344.617 kb on + strand, within QEN71_RS41340at 344.618 kb on - strand, within QEN71_RS41340at 344.624 kb on - strand, within QEN71_RS41340at 344.669 kb on - strand, within QEN71_RS41340at 344.695 kb on + strand, within QEN71_RS41340at 344.696 kb on - strand, within QEN71_RS41340at 344.738 kb on - strand, within QEN71_RS41340at 344.858 kb on + strandat 344.859 kb on - strandat 344.884 kb on + strandat 344.885 kb on - strandat 344.953 kb on - strandat 344.995 kb on + strandat 344.995 kb on + strandat 344.996 kb on - strandat 344.996 kb on - strandat 344.996 kb on - strandat 345.052 kb on + strandat 345.053 kb on - strandat 345.108 kb on + strandat 345.144 kb on + strandat 345.145 kb on - strandat 345.145 kb on - strandat 345.155 kb on + strandat 345.185 kb on - strand, within QEN71_RS41345at 345.193 kb on + strand, within QEN71_RS41345at 345.194 kb on - strand, within QEN71_RS41345at 345.194 kb on - strand, within QEN71_RS41345at 345.256 kb on - strand, within QEN71_RS41345at 345.276 kb on - strand, within QEN71_RS41345at 345.345 kb on + strand, within QEN71_RS41345at 345.346 kb on - strand, within QEN71_RS41345at 345.367 kb on - strand, within QEN71_RS41345at 345.456 kb on + strand, within QEN71_RS41345at 345.631 kb on - strand, within QEN71_RS41345at 345.670 kb on + strand, within QEN71_RS41345at 345.671 kb on - strand, within QEN71_RS41345at 345.673 kb on - strand, within QEN71_RS41345at 345.716 kb on + strand, within QEN71_RS41345at 345.716 kb on + strand, within QEN71_RS41345at 345.716 kb on + strand, within QEN71_RS41345at 345.742 kb on + strand, within QEN71_RS41345at 345.742 kb on + strand, within QEN71_RS41345at 345.742 kb on + strand, within QEN71_RS41345at 345.814 kb on + strand, within QEN71_RS41345at 345.815 kb on - strand, within QEN71_RS41345at 345.884 kb on - strand, within QEN71_RS41345at 345.884 kb on - strand, within QEN71_RS41345

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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342,776 + QEN71_RS41335 0.15 +0.2
342,901 + QEN71_RS41335 0.31 -0.9
343,079 + QEN71_RS41335 0.53 -0.5
343,079 + QEN71_RS41335 0.53 +1.0
343,079 + QEN71_RS41335 0.53 -2.0
343,080 - QEN71_RS41335 0.53 -0.4
343,358 - QEN71_RS41335 0.87 -1.0
343,487 + +0.1
343,488 - -1.2
343,501 + +0.0
343,501 + -1.7
343,501 + -0.2
343,647 - +0.3
343,760 - -0.9
343,898 + QEN71_RS41340 0.16 +0.7
343,899 - QEN71_RS41340 0.16 +2.0
343,899 - QEN71_RS41340 0.16 +1.5
344,032 - QEN71_RS41340 0.27 -0.0
344,056 + QEN71_RS41340 0.29 +0.4
344,059 + QEN71_RS41340 0.29 -2.5
344,060 - QEN71_RS41340 0.29 +1.0
344,060 - QEN71_RS41340 0.29 +0.7
344,080 - QEN71_RS41340 0.31 +0.4
344,142 + QEN71_RS41340 0.36 -0.0
344,149 + QEN71_RS41340 0.37 +0.5
344,168 + QEN71_RS41340 0.39 -0.2
344,174 - QEN71_RS41340 0.39 -0.6
344,174 - QEN71_RS41340 0.39 +0.8
344,191 + QEN71_RS41340 0.41 -0.1
344,192 - QEN71_RS41340 0.41 -1.3
344,215 + QEN71_RS41340 0.43 +0.4
344,215 + QEN71_RS41340 0.43 -1.1
344,463 + QEN71_RS41340 0.64 +0.5
344,498 - QEN71_RS41340 0.67 -0.2
344,512 + QEN71_RS41340 0.68 +0.5
344,512 + QEN71_RS41340 0.68 -0.5
344,513 - QEN71_RS41340 0.68 +0.1
344,617 + QEN71_RS41340 0.77 -0.3
344,618 - QEN71_RS41340 0.77 -0.0
344,624 - QEN71_RS41340 0.78 -0.9
344,669 - QEN71_RS41340 0.81 +1.2
344,695 + QEN71_RS41340 0.84 +0.1
344,696 - QEN71_RS41340 0.84 -0.5
344,738 - QEN71_RS41340 0.87 +0.2
344,858 + -0.9
344,859 - -0.6
344,884 + -0.1
344,885 - +0.3
344,953 - -0.5
344,995 + -0.0
344,995 + -0.3
344,996 - +0.4
344,996 - -0.7
344,996 - -0.9
345,052 + -0.8
345,053 - -0.9
345,108 + -1.5
345,144 + +0.3
345,145 - -0.4
345,145 - +0.6
345,155 + +0.2
345,185 - QEN71_RS41345 0.11 -0.4
345,193 + QEN71_RS41345 0.12 +0.0
345,194 - QEN71_RS41345 0.12 +0.1
345,194 - QEN71_RS41345 0.12 -0.6
345,256 - QEN71_RS41345 0.17 -0.4
345,276 - QEN71_RS41345 0.19 +0.5
345,345 + QEN71_RS41345 0.25 +0.0
345,346 - QEN71_RS41345 0.25 -0.4
345,367 - QEN71_RS41345 0.27 -0.7
345,456 + QEN71_RS41345 0.35 -1.1
345,631 - QEN71_RS41345 0.50 +0.1
345,670 + QEN71_RS41345 0.53 +0.2
345,671 - QEN71_RS41345 0.53 -1.0
345,673 - QEN71_RS41345 0.53 -0.1
345,716 + QEN71_RS41345 0.57 -0.1
345,716 + QEN71_RS41345 0.57 +0.9
345,716 + QEN71_RS41345 0.57 -0.4
345,742 + QEN71_RS41345 0.59 +0.6
345,742 + QEN71_RS41345 0.59 -0.4
345,742 + QEN71_RS41345 0.59 +0.2
345,814 + QEN71_RS41345 0.66 -0.5
345,815 - QEN71_RS41345 0.66 -1.4
345,884 - QEN71_RS41345 0.72 +0.9
345,884 - QEN71_RS41345 0.72 -2.0

Or see this region's nucleotide sequence