Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31730 and QEN71_RS31735 are separated by 18 nucleotides QEN71_RS31735 and QEN71_RS31740 are separated by 10 nucleotides QEN71_RS31740 and QEN71_RS31745 overlap by 4 nucleotides
QEN71_RS31730: QEN71_RS31730 - type VI secretion system protein TssA, at 467,254 to 468,384
_RS31730
QEN71_RS31735: QEN71_RS31735 - OmpA family protein, at 468,403 to 469,317
_RS31735
QEN71_RS31740: QEN71_RS31740 - type VI secretion system-associated protein TagF, at 469,328 to 470,317
_RS31740
QEN71_RS31745: QEN71_RS31745 - type VI secretion system membrane subunit TssM, at 470,314 to 474,171
_RS31745
Position (kb) 468
469
470 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 467.542 kb on + strand, within QEN71_RS31730 at 467.542 kb on + strand, within QEN71_RS31730 at 467.543 kb on - strand, within QEN71_RS31730 at 467.652 kb on + strand, within QEN71_RS31730 at 467.748 kb on + strand, within QEN71_RS31730 at 467.749 kb on - strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.846 kb on - strand, within QEN71_RS31730 at 467.846 kb on - strand, within QEN71_RS31730 at 467.962 kb on + strand, within QEN71_RS31730 at 467.974 kb on + strand, within QEN71_RS31730 at 467.974 kb on + strand, within QEN71_RS31730 at 467.975 kb on - strand, within QEN71_RS31730 at 468.016 kb on - strand, within QEN71_RS31730 at 468.016 kb on - strand, within QEN71_RS31730 at 468.024 kb on + strand, within QEN71_RS31730 at 468.025 kb on - strand, within QEN71_RS31730 at 468.025 kb on - strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.138 kb on + strand, within QEN71_RS31730 at 468.138 kb on + strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.228 kb on + strand, within QEN71_RS31730 at 468.229 kb on - strand, within QEN71_RS31730 at 468.254 kb on - strand, within QEN71_RS31730 at 468.254 kb on - strand, within QEN71_RS31730 at 468.286 kb on - strand at 468.382 kb on + strand at 468.382 kb on + strand at 468.382 kb on + strand at 468.382 kb on + strand at 468.382 kb on + strand at 468.427 kb on - strand at 468.536 kb on + strand, within QEN71_RS31735 at 468.536 kb on + strand, within QEN71_RS31735 at 468.585 kb on + strand, within QEN71_RS31735 at 468.585 kb on + strand, within QEN71_RS31735 at 468.586 kb on - strand, within QEN71_RS31735 at 468.600 kb on + strand, within QEN71_RS31735 at 468.601 kb on - strand, within QEN71_RS31735 at 468.645 kb on + strand, within QEN71_RS31735 at 468.645 kb on + strand, within QEN71_RS31735 at 468.794 kb on + strand, within QEN71_RS31735 at 468.794 kb on + strand, within QEN71_RS31735 at 468.794 kb on + strand, within QEN71_RS31735 at 468.795 kb on - strand, within QEN71_RS31735 at 468.795 kb on - strand, within QEN71_RS31735 at 468.943 kb on + strand, within QEN71_RS31735 at 468.943 kb on + strand, within QEN71_RS31735 at 468.944 kb on - strand, within QEN71_RS31735 at 468.944 kb on - strand, within QEN71_RS31735 at 468.944 kb on - strand, within QEN71_RS31735 at 468.944 kb on - strand, within QEN71_RS31735 at 468.973 kb on + strand, within QEN71_RS31735 at 468.974 kb on - strand, within QEN71_RS31735 at 468.974 kb on - strand, within QEN71_RS31735 at 468.974 kb on - strand, within QEN71_RS31735 at 468.974 kb on - strand, within QEN71_RS31735 at 468.974 kb on - strand, within QEN71_RS31735 at 469.016 kb on + strand, within QEN71_RS31735 at 469.016 kb on + strand, within QEN71_RS31735 at 469.016 kb on + strand, within QEN71_RS31735 at 469.016 kb on + strand, within QEN71_RS31735 at 469.016 kb on + strand, within QEN71_RS31735 at 469.017 kb on - strand, within QEN71_RS31735 at 469.017 kb on - strand, within QEN71_RS31735 at 469.017 kb on - strand, within QEN71_RS31735 at 469.017 kb on - strand, within QEN71_RS31735 at 469.017 kb on - strand, within QEN71_RS31735 at 469.079 kb on - strand, within QEN71_RS31735 at 469.084 kb on + strand, within QEN71_RS31735 at 469.084 kb on + strand, within QEN71_RS31735 at 469.084 kb on + strand, within QEN71_RS31735 at 469.085 kb on - strand, within QEN71_RS31735 at 469.085 kb on - strand, within QEN71_RS31735 at 469.085 kb on - strand, within QEN71_RS31735 at 469.085 kb on - strand, within QEN71_RS31735 at 469.192 kb on - strand, within QEN71_RS31735 at 469.192 kb on - strand, within QEN71_RS31735 at 469.329 kb on + strand at 469.329 kb on + strand at 469.329 kb on + strand at 469.330 kb on - strand at 469.330 kb on - strand at 469.330 kb on - strand at 469.330 kb on - strand at 469.330 kb on - strand at 469.374 kb on - strand at 469.398 kb on + strand at 469.399 kb on - strand at 469.399 kb on - strand at 469.399 kb on - strand at 469.399 kb on - strand at 469.399 kb on - strand at 469.485 kb on + strand, within QEN71_RS31740 at 469.486 kb on - strand, within QEN71_RS31740 at 469.486 kb on - strand, within QEN71_RS31740 at 469.486 kb on - strand, within QEN71_RS31740 at 469.656 kb on + strand, within QEN71_RS31740 at 469.657 kb on - strand, within QEN71_RS31740 at 470.086 kb on + strand, within QEN71_RS31740 at 470.086 kb on + strand, within QEN71_RS31740 at 470.086 kb on + strand, within QEN71_RS31740 at 470.087 kb on - strand, within QEN71_RS31740 at 470.087 kb on - strand, within QEN71_RS31740 at 470.087 kb on - strand, within QEN71_RS31740 at 470.087 kb on - strand, within QEN71_RS31740 at 470.286 kb on + strand at 470.286 kb on + strand at 470.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 467,542 + QEN71_RS31730 0.25 +0.3 467,542 + QEN71_RS31730 0.25 -2.5 467,543 - QEN71_RS31730 0.26 +1.3 467,652 + QEN71_RS31730 0.35 +0.0 467,748 + QEN71_RS31730 0.44 -0.2 467,749 - QEN71_RS31730 0.44 -0.5 467,845 + QEN71_RS31730 0.52 -0.6 467,845 + QEN71_RS31730 0.52 +0.3 467,845 + QEN71_RS31730 0.52 -1.6 467,846 - QEN71_RS31730 0.52 +0.2 467,846 - QEN71_RS31730 0.52 -0.5 467,962 + QEN71_RS31730 0.63 -0.7 467,974 + QEN71_RS31730 0.64 +1.0 467,974 + QEN71_RS31730 0.64 -0.3 467,975 - QEN71_RS31730 0.64 +0.2 468,016 - QEN71_RS31730 0.67 +0.1 468,016 - QEN71_RS31730 0.67 +0.4 468,024 + QEN71_RS31730 0.68 -1.6 468,025 - QEN71_RS31730 0.68 +0.6 468,025 - QEN71_RS31730 0.68 +0.8 468,129 + QEN71_RS31730 0.77 -0.8 468,129 + QEN71_RS31730 0.77 +2.3 468,129 + QEN71_RS31730 0.77 +0.0 468,129 + QEN71_RS31730 0.77 +1.6 468,129 + QEN71_RS31730 0.77 +0.4 468,129 + QEN71_RS31730 0.77 +0.7 468,129 + QEN71_RS31730 0.77 -0.3 468,130 - QEN71_RS31730 0.77 +0.2 468,130 - QEN71_RS31730 0.77 +1.8 468,130 - QEN71_RS31730 0.77 +0.3 468,130 - QEN71_RS31730 0.77 +0.3 468,138 + QEN71_RS31730 0.78 +0.1 468,138 + QEN71_RS31730 0.78 -0.2 468,139 - QEN71_RS31730 0.78 -0.1 468,139 - QEN71_RS31730 0.78 -1.2 468,139 - QEN71_RS31730 0.78 -0.1 468,228 + QEN71_RS31730 0.86 +0.7 468,229 - QEN71_RS31730 0.86 +1.0 468,254 - QEN71_RS31730 0.88 +0.0 468,254 - QEN71_RS31730 0.88 +1.2 468,286 - -0.9 468,382 + -0.3 468,382 + -0.4 468,382 + +0.0 468,382 + +0.2 468,382 + -0.5 468,427 - +0.1 468,536 + QEN71_RS31735 0.15 -1.3 468,536 + QEN71_RS31735 0.15 -1.5 468,585 + QEN71_RS31735 0.20 +0.0 468,585 + QEN71_RS31735 0.20 +0.7 468,586 - QEN71_RS31735 0.20 +0.4 468,600 + QEN71_RS31735 0.22 -0.1 468,601 - QEN71_RS31735 0.22 +0.7 468,645 + QEN71_RS31735 0.26 +0.4 468,645 + QEN71_RS31735 0.26 -1.0 468,794 + QEN71_RS31735 0.43 +0.1 468,794 + QEN71_RS31735 0.43 +0.9 468,794 + QEN71_RS31735 0.43 -0.6 468,795 - QEN71_RS31735 0.43 +0.5 468,795 - QEN71_RS31735 0.43 +0.4 468,943 + QEN71_RS31735 0.59 +1.0 468,943 + QEN71_RS31735 0.59 +0.4 468,944 - QEN71_RS31735 0.59 +0.3 468,944 - QEN71_RS31735 0.59 -0.2 468,944 - QEN71_RS31735 0.59 -0.7 468,944 - QEN71_RS31735 0.59 -0.0 468,973 + QEN71_RS31735 0.62 -0.1 468,974 - QEN71_RS31735 0.62 -0.7 468,974 - QEN71_RS31735 0.62 +0.1 468,974 - QEN71_RS31735 0.62 +0.5 468,974 - QEN71_RS31735 0.62 -0.3 468,974 - QEN71_RS31735 0.62 -1.6 469,016 + QEN71_RS31735 0.67 +0.0 469,016 + QEN71_RS31735 0.67 -2.2 469,016 + QEN71_RS31735 0.67 +0.5 469,016 + QEN71_RS31735 0.67 +0.0 469,016 + QEN71_RS31735 0.67 -0.6 469,017 - QEN71_RS31735 0.67 -0.6 469,017 - QEN71_RS31735 0.67 -0.3 469,017 - QEN71_RS31735 0.67 -0.5 469,017 - QEN71_RS31735 0.67 -0.6 469,017 - QEN71_RS31735 0.67 -0.2 469,079 - QEN71_RS31735 0.74 -1.3 469,084 + QEN71_RS31735 0.74 -2.2 469,084 + QEN71_RS31735 0.74 -0.9 469,084 + QEN71_RS31735 0.74 +1.6 469,085 - QEN71_RS31735 0.75 -0.3 469,085 - QEN71_RS31735 0.75 -0.1 469,085 - QEN71_RS31735 0.75 -0.4 469,085 - QEN71_RS31735 0.75 +1.0 469,192 - QEN71_RS31735 0.86 +1.2 469,192 - QEN71_RS31735 0.86 -1.0 469,329 + -0.1 469,329 + -0.4 469,329 + +0.2 469,330 - -0.8 469,330 - +0.0 469,330 - -0.4 469,330 - -0.5 469,330 - -0.8 469,374 - -1.4 469,398 + +0.7 469,399 - -2.1 469,399 - +1.4 469,399 - -0.0 469,399 - -2.3 469,399 - -1.7 469,485 + QEN71_RS31740 0.16 -2.1 469,486 - QEN71_RS31740 0.16 -0.4 469,486 - QEN71_RS31740 0.16 -1.3 469,486 - QEN71_RS31740 0.16 -0.6 469,656 + QEN71_RS31740 0.33 -1.5 469,657 - QEN71_RS31740 0.33 -1.4 470,086 + QEN71_RS31740 0.77 -2.4 470,086 + QEN71_RS31740 0.77 -1.4 470,086 + QEN71_RS31740 0.77 -3.2 470,087 - QEN71_RS31740 0.77 +0.1 470,087 - QEN71_RS31740 0.77 -0.9 470,087 - QEN71_RS31740 0.77 +2.3 470,087 - QEN71_RS31740 0.77 +1.0 470,286 + -2.5 470,286 + -3.8 470,287 - +0.0
Or see this region's nucleotide sequence