Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30585 and QEN71_RS30590 are separated by 14 nucleotides QEN71_RS30590 and QEN71_RS30595 are separated by 135 nucleotides QEN71_RS30595 and QEN71_RS30600 overlap by 1 nucleotides
QEN71_RS30585: QEN71_RS30585 - class I poly(R)-hydroxyalkanoic acid synthase, at 199,479 to 201,185
_RS30585
QEN71_RS30590: QEN71_RS30590 - MaoC family dehydratase, at 201,200 to 201,670
_RS30590
QEN71_RS30595: QEN71_RS30595 - ligase-associated DNA damage response endonuclease PdeM, at 201,806 to 202,474
_RS30595
QEN71_RS30600: QEN71_RS30600 - ligase-associated DNA damage response DEXH box helicase, at 202,474 to 205,140
_RS30600
Position (kb) 201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.878 kb on + strand, within QEN71_RS30585 at 200.878 kb on + strand, within QEN71_RS30585 at 200.898 kb on - strand, within QEN71_RS30585 at 200.900 kb on - strand, within QEN71_RS30585 at 200.900 kb on - strand, within QEN71_RS30585 at 200.900 kb on - strand, within QEN71_RS30585 at 201.170 kb on + strand at 201.170 kb on + strand at 201.292 kb on + strand, within QEN71_RS30590 at 201.293 kb on - strand, within QEN71_RS30590 at 201.308 kb on + strand, within QEN71_RS30590 at 201.376 kb on + strand, within QEN71_RS30590 at 201.423 kb on + strand, within QEN71_RS30590 at 201.423 kb on + strand, within QEN71_RS30590 at 201.424 kb on - strand, within QEN71_RS30590 at 201.751 kb on - strand at 201.852 kb on + strand at 201.852 kb on + strand at 201.959 kb on + strand, within QEN71_RS30595 at 201.987 kb on + strand, within QEN71_RS30595 at 202.017 kb on + strand, within QEN71_RS30595 at 202.018 kb on - strand, within QEN71_RS30595 at 202.018 kb on - strand, within QEN71_RS30595 at 202.967 kb on + strand, within QEN71_RS30600 at 202.968 kb on - strand, within QEN71_RS30600 at 203.198 kb on + strand, within QEN71_RS30600 at 203.321 kb on + strand, within QEN71_RS30600 at 203.321 kb on + strand, within QEN71_RS30600 at 203.321 kb on + strand, within QEN71_RS30600 at 203.322 kb on - strand, within QEN71_RS30600
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 200,878 + QEN71_RS30585 0.82 -0.6 200,878 + QEN71_RS30585 0.82 +1.0 200,898 - QEN71_RS30585 0.83 +0.8 200,900 - QEN71_RS30585 0.83 -1.0 200,900 - QEN71_RS30585 0.83 -1.4 200,900 - QEN71_RS30585 0.83 +0.3 201,170 + -0.3 201,170 + +0.0 201,292 + QEN71_RS30590 0.20 +0.2 201,293 - QEN71_RS30590 0.20 +1.8 201,308 + QEN71_RS30590 0.23 -0.3 201,376 + QEN71_RS30590 0.37 -2.1 201,423 + QEN71_RS30590 0.47 -0.7 201,423 + QEN71_RS30590 0.47 +1.0 201,424 - QEN71_RS30590 0.48 +2.0 201,751 - +0.4 201,852 + -0.2 201,852 + +0.0 201,959 + QEN71_RS30595 0.23 -0.4 201,987 + QEN71_RS30595 0.27 -0.2 202,017 + QEN71_RS30595 0.32 +0.3 202,018 - QEN71_RS30595 0.32 +0.0 202,018 - QEN71_RS30595 0.32 -0.4 202,967 + QEN71_RS30600 0.18 -1.7 202,968 - QEN71_RS30600 0.19 +0.5 203,198 + QEN71_RS30600 0.27 -0.3 203,321 + QEN71_RS30600 0.32 +1.2 203,321 + QEN71_RS30600 0.32 +0.2 203,321 + QEN71_RS30600 0.32 -0.1 203,322 - QEN71_RS30600 0.32 +0.4
Or see this region's nucleotide sequence