Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30100 and QEN71_RS30105 are separated by 833 nucleotides QEN71_RS30105 and QEN71_RS30110 are separated by 87 nucleotides
QEN71_RS30100: QEN71_RS30100 - MipA/OmpV family protein, at 104,193 to 105,032
_RS30100
QEN71_RS30105: QEN71_RS30105 - replication initiation protein, at 105,866 to 107,398
_RS30105
QEN71_RS30110: QEN71_RS30110 - AAA family ATPase, at 107,486 to 108,637
_RS30110
Position (kb)
105
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 104.894 kb on + strand, within QEN71_RS30100 at 104.894 kb on + strand, within QEN71_RS30100 at 104.894 kb on + strand, within QEN71_RS30100 at 104.895 kb on - strand, within QEN71_RS30100 at 104.895 kb on - strand, within QEN71_RS30100 at 104.909 kb on + strand, within QEN71_RS30100 at 104.909 kb on + strand, within QEN71_RS30100 at 104.910 kb on - strand, within QEN71_RS30100 at 104.910 kb on - strand, within QEN71_RS30100 at 104.910 kb on - strand, within QEN71_RS30100 at 104.910 kb on - strand, within QEN71_RS30100 at 104.910 kb on - strand, within QEN71_RS30100 at 105.031 kb on - strand at 105.073 kb on - strand at 105.073 kb on - strand at 105.073 kb on - strand at 105.073 kb on - strand at 105.073 kb on - strand at 105.075 kb on - strand at 105.077 kb on + strand at 105.091 kb on + strand at 105.257 kb on + strand at 105.257 kb on + strand at 105.258 kb on - strand at 105.258 kb on - strand at 105.266 kb on + strand at 105.270 kb on + strand at 105.271 kb on - strand at 105.271 kb on - strand at 105.271 kb on - strand at 105.271 kb on - strand at 105.362 kb on + strand at 105.363 kb on - strand at 105.363 kb on - strand at 105.435 kb on + strand at 105.436 kb on - strand at 105.436 kb on - strand at 105.436 kb on - strand at 105.501 kb on + strand at 105.513 kb on - strand at 105.551 kb on + strand at 105.552 kb on - strand at 105.565 kb on + strand at 105.565 kb on + strand at 105.565 kb on + strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.566 kb on - strand at 105.569 kb on + strand at 105.570 kb on - strand at 105.574 kb on + strand at 105.574 kb on + strand at 105.574 kb on + strand at 105.575 kb on - strand at 105.578 kb on + strand at 105.578 kb on + strand at 105.578 kb on + strand at 105.578 kb on + strand at 105.579 kb on - strand at 105.579 kb on - strand at 105.579 kb on - strand at 105.627 kb on + strand at 105.627 kb on + strand at 105.628 kb on - strand at 105.635 kb on + strand at 105.635 kb on + strand at 105.636 kb on - strand at 105.636 kb on - strand at 105.636 kb on - strand at 105.636 kb on - strand at 105.642 kb on - strand at 105.642 kb on - strand at 105.657 kb on + strand at 105.657 kb on + strand at 105.658 kb on - strand at 105.676 kb on - strand at 105.720 kb on + strand at 105.721 kb on - strand at 105.770 kb on - strand at 105.770 kb on - strand at 105.993 kb on + strand at 105.993 kb on + strand at 105.994 kb on - strand at 106.080 kb on + strand, within QEN71_RS30105 at 106.080 kb on + strand, within QEN71_RS30105 at 106.122 kb on + strand, within QEN71_RS30105 at 106.122 kb on + strand, within QEN71_RS30105 at 106.122 kb on + strand, within QEN71_RS30105 at 106.122 kb on + strand, within QEN71_RS30105 at 106.122 kb on + strand, within QEN71_RS30105 at 107.452 kb on + strand at 107.452 kb on + strand at 107.452 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 104,894 + QEN71_RS30100 0.83 -0.7 104,894 + QEN71_RS30100 0.83 -0.2 104,894 + QEN71_RS30100 0.83 -0.1 104,895 - QEN71_RS30100 0.84 -1.9 104,895 - QEN71_RS30100 0.84 -2.2 104,909 + QEN71_RS30100 0.85 -0.3 104,909 + QEN71_RS30100 0.85 -0.3 104,910 - QEN71_RS30100 0.85 +0.6 104,910 - QEN71_RS30100 0.85 -0.0 104,910 - QEN71_RS30100 0.85 -0.8 104,910 - QEN71_RS30100 0.85 -1.2 104,910 - QEN71_RS30100 0.85 +0.5 105,031 - -0.7 105,073 - +0.3 105,073 - -0.6 105,073 - +0.0 105,073 - -1.2 105,073 - +1.7 105,075 - -1.7 105,077 + -1.7 105,091 + -0.3 105,257 + -0.4 105,257 + +1.6 105,258 - -0.3 105,258 - -0.7 105,266 + -1.2 105,270 + +0.7 105,271 - +0.4 105,271 - +0.8 105,271 - -0.4 105,271 - +0.2 105,362 + -0.9 105,363 - +0.0 105,363 - -1.5 105,435 + -0.6 105,436 - -1.6 105,436 - +2.0 105,436 - +0.0 105,501 + +0.2 105,513 - -0.7 105,551 + -1.6 105,552 - +1.0 105,565 + -2.9 105,565 + -0.3 105,565 + +0.2 105,566 - +1.3 105,566 - +1.0 105,566 - +0.8 105,566 - -1.0 105,566 - -0.7 105,566 - -0.5 105,566 - -1.6 105,569 + +1.7 105,570 - -0.2 105,574 + +0.1 105,574 + -0.3 105,574 + -0.7 105,575 - -0.7 105,578 + -0.7 105,578 + -0.2 105,578 + -0.0 105,578 + +1.0 105,579 - +0.8 105,579 - +0.3 105,579 - -0.5 105,627 + +0.0 105,627 + +0.9 105,628 - +0.1 105,635 + +0.6 105,635 + +0.2 105,636 - -0.6 105,636 - +0.7 105,636 - -0.3 105,636 - +0.3 105,642 - +2.6 105,642 - -1.8 105,657 + +1.7 105,657 + +0.2 105,658 - +0.9 105,676 - -0.3 105,720 + -0.5 105,721 - -0.7 105,770 - -0.7 105,770 - -0.2 105,993 + +0.4 105,993 + -0.7 105,994 - -1.7 106,080 + QEN71_RS30105 0.14 -0.1 106,080 + QEN71_RS30105 0.14 -1.0 106,122 + QEN71_RS30105 0.17 -2.0 106,122 + QEN71_RS30105 0.17 -0.2 106,122 + QEN71_RS30105 0.17 +0.0 106,122 + QEN71_RS30105 0.17 -0.4 106,122 + QEN71_RS30105 0.17 +0.7 107,452 + -0.9 107,452 + -0.6 107,452 + -0.1
Or see this region's nucleotide sequence