Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS30105

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS30100 and QEN71_RS30105 are separated by 833 nucleotidesQEN71_RS30105 and QEN71_RS30110 are separated by 87 nucleotides QEN71_RS30100: QEN71_RS30100 - MipA/OmpV family protein, at 104,193 to 105,032 _RS30100 QEN71_RS30105: QEN71_RS30105 - replication initiation protein, at 105,866 to 107,398 _RS30105 QEN71_RS30110: QEN71_RS30110 - AAA family ATPase, at 107,486 to 108,637 _RS30110 Position (kb) 105 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 104.894 kb on + strand, within QEN71_RS30100at 104.894 kb on + strand, within QEN71_RS30100at 104.894 kb on + strand, within QEN71_RS30100at 104.895 kb on - strand, within QEN71_RS30100at 104.895 kb on - strand, within QEN71_RS30100at 104.909 kb on + strand, within QEN71_RS30100at 104.909 kb on + strand, within QEN71_RS30100at 104.910 kb on - strand, within QEN71_RS30100at 104.910 kb on - strand, within QEN71_RS30100at 104.910 kb on - strand, within QEN71_RS30100at 104.910 kb on - strand, within QEN71_RS30100at 104.910 kb on - strand, within QEN71_RS30100at 105.031 kb on - strandat 105.073 kb on - strandat 105.073 kb on - strandat 105.073 kb on - strandat 105.073 kb on - strandat 105.073 kb on - strandat 105.075 kb on - strandat 105.077 kb on + strandat 105.091 kb on + strandat 105.257 kb on + strandat 105.257 kb on + strandat 105.258 kb on - strandat 105.258 kb on - strandat 105.266 kb on + strandat 105.270 kb on + strandat 105.271 kb on - strandat 105.271 kb on - strandat 105.271 kb on - strandat 105.271 kb on - strandat 105.362 kb on + strandat 105.363 kb on - strandat 105.363 kb on - strandat 105.435 kb on + strandat 105.436 kb on - strandat 105.436 kb on - strandat 105.436 kb on - strandat 105.501 kb on + strandat 105.513 kb on - strandat 105.551 kb on + strandat 105.552 kb on - strandat 105.565 kb on + strandat 105.565 kb on + strandat 105.565 kb on + strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.566 kb on - strandat 105.569 kb on + strandat 105.570 kb on - strandat 105.574 kb on + strandat 105.574 kb on + strandat 105.574 kb on + strandat 105.575 kb on - strandat 105.578 kb on + strandat 105.578 kb on + strandat 105.578 kb on + strandat 105.578 kb on + strandat 105.579 kb on - strandat 105.579 kb on - strandat 105.579 kb on - strandat 105.627 kb on + strandat 105.627 kb on + strandat 105.628 kb on - strandat 105.635 kb on + strandat 105.635 kb on + strandat 105.636 kb on - strandat 105.636 kb on - strandat 105.636 kb on - strandat 105.636 kb on - strandat 105.642 kb on - strandat 105.642 kb on - strandat 105.657 kb on + strandat 105.657 kb on + strandat 105.658 kb on - strandat 105.676 kb on - strandat 105.720 kb on + strandat 105.721 kb on - strandat 105.770 kb on - strandat 105.770 kb on - strandat 105.993 kb on + strandat 105.993 kb on + strandat 105.994 kb on - strandat 106.080 kb on + strand, within QEN71_RS30105at 106.080 kb on + strand, within QEN71_RS30105at 106.122 kb on + strand, within QEN71_RS30105at 106.122 kb on + strand, within QEN71_RS30105at 106.122 kb on + strand, within QEN71_RS30105at 106.122 kb on + strand, within QEN71_RS30105at 106.122 kb on + strand, within QEN71_RS30105at 107.452 kb on + strandat 107.452 kb on + strandat 107.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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104,894 + QEN71_RS30100 0.83 -0.7
104,894 + QEN71_RS30100 0.83 -0.2
104,894 + QEN71_RS30100 0.83 -0.1
104,895 - QEN71_RS30100 0.84 -1.9
104,895 - QEN71_RS30100 0.84 -2.2
104,909 + QEN71_RS30100 0.85 -0.3
104,909 + QEN71_RS30100 0.85 -0.3
104,910 - QEN71_RS30100 0.85 +0.6
104,910 - QEN71_RS30100 0.85 -0.0
104,910 - QEN71_RS30100 0.85 -0.8
104,910 - QEN71_RS30100 0.85 -1.2
104,910 - QEN71_RS30100 0.85 +0.5
105,031 - -0.7
105,073 - +0.3
105,073 - -0.6
105,073 - +0.0
105,073 - -1.2
105,073 - +1.7
105,075 - -1.7
105,077 + -1.7
105,091 + -0.3
105,257 + -0.4
105,257 + +1.6
105,258 - -0.3
105,258 - -0.7
105,266 + -1.2
105,270 + +0.7
105,271 - +0.4
105,271 - +0.8
105,271 - -0.4
105,271 - +0.2
105,362 + -0.9
105,363 - +0.0
105,363 - -1.5
105,435 + -0.6
105,436 - -1.6
105,436 - +2.0
105,436 - +0.0
105,501 + +0.2
105,513 - -0.7
105,551 + -1.6
105,552 - +1.0
105,565 + -2.9
105,565 + -0.3
105,565 + +0.2
105,566 - +1.3
105,566 - +1.0
105,566 - +0.8
105,566 - -1.0
105,566 - -0.7
105,566 - -0.5
105,566 - -1.6
105,569 + +1.7
105,570 - -0.2
105,574 + +0.1
105,574 + -0.3
105,574 + -0.7
105,575 - -0.7
105,578 + -0.7
105,578 + -0.2
105,578 + -0.0
105,578 + +1.0
105,579 - +0.8
105,579 - +0.3
105,579 - -0.5
105,627 + +0.0
105,627 + +0.9
105,628 - +0.1
105,635 + +0.6
105,635 + +0.2
105,636 - -0.6
105,636 - +0.7
105,636 - -0.3
105,636 - +0.3
105,642 - +2.6
105,642 - -1.8
105,657 + +1.7
105,657 + +0.2
105,658 - +0.9
105,676 - -0.3
105,720 + -0.5
105,721 - -0.7
105,770 - -0.7
105,770 - -0.2
105,993 + +0.4
105,993 + -0.7
105,994 - -1.7
106,080 + QEN71_RS30105 0.14 -0.1
106,080 + QEN71_RS30105 0.14 -1.0
106,122 + QEN71_RS30105 0.17 -2.0
106,122 + QEN71_RS30105 0.17 -0.2
106,122 + QEN71_RS30105 0.17 +0.0
106,122 + QEN71_RS30105 0.17 -0.4
106,122 + QEN71_RS30105 0.17 +0.7
107,452 + -0.9
107,452 + -0.6
107,452 + -0.1

Or see this region's nucleotide sequence