Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS22170

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS22165 and QEN71_RS22170 are separated by 50 nucleotidesQEN71_RS22170 and QEN71_RS22175 are separated by 125 nucleotides QEN71_RS22165: QEN71_RS22165 - cystathionine beta-lyase, at 4,919,672 to 4,920,856 _RS22165 QEN71_RS22170: QEN71_RS22170 - hypothetical protein, at 4,920,907 to 4,921,536 _RS22170 QEN71_RS22175: QEN71_RS22175 - acetyl-CoA C-acyltransferase family protein, at 4,921,662 to 4,922,846 _RS22175 Position (kb) 4920 4921 4922Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4919.952 kb on + strand, within QEN71_RS22165at 4919.952 kb on + strand, within QEN71_RS22165at 4919.952 kb on + strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4919.953 kb on - strand, within QEN71_RS22165at 4920.222 kb on + strand, within QEN71_RS22165at 4920.352 kb on + strand, within QEN71_RS22165at 4920.353 kb on - strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.453 kb on + strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.454 kb on - strand, within QEN71_RS22165at 4920.456 kb on + strand, within QEN71_RS22165at 4920.456 kb on + strand, within QEN71_RS22165at 4920.457 kb on - strand, within QEN71_RS22165at 4920.516 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.567 kb on + strand, within QEN71_RS22165at 4920.568 kb on - strand, within QEN71_RS22165at 4920.885 kb on + strandat 4920.885 kb on + strandat 4920.886 kb on - strandat 4920.886 kb on - strandat 4920.898 kb on + strandat 4920.898 kb on + strandat 4920.908 kb on + strandat 4920.909 kb on - strandat 4920.909 kb on - strandat 4921.009 kb on + strand, within QEN71_RS22170at 4921.010 kb on - strand, within QEN71_RS22170at 4921.010 kb on - strand, within QEN71_RS22170at 4921.010 kb on - strand, within QEN71_RS22170at 4921.170 kb on + strand, within QEN71_RS22170at 4921.170 kb on + strand, within QEN71_RS22170at 4921.170 kb on + strand, within QEN71_RS22170at 4921.170 kb on + strand, within QEN71_RS22170at 4921.171 kb on - strand, within QEN71_RS22170at 4921.171 kb on - strand, within QEN71_RS22170at 4921.171 kb on - strand, within QEN71_RS22170at 4921.257 kb on - strand, within QEN71_RS22170at 4921.262 kb on + strand, within QEN71_RS22170at 4921.262 kb on + strand, within QEN71_RS22170at 4921.263 kb on - strand, within QEN71_RS22170at 4921.263 kb on - strand, within QEN71_RS22170at 4921.263 kb on - strand, within QEN71_RS22170at 4921.349 kb on + strand, within QEN71_RS22170at 4921.568 kb on + strandat 4921.568 kb on + strandat 4921.601 kb on + strandat 4921.602 kb on - strandat 4921.726 kb on + strandat 4921.726 kb on + strandat 4921.753 kb on + strandat 4921.753 kb on + strandat 4921.753 kb on + strandat 4921.753 kb on + strandat 4921.754 kb on - strandat 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.979 kb on + strand, within QEN71_RS22175at 4921.980 kb on - strand, within QEN71_RS22175at 4921.980 kb on - strand, within QEN71_RS22175at 4921.980 kb on - strand, within QEN71_RS22175at 4921.980 kb on - strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.981 kb on + strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4921.982 kb on - strand, within QEN71_RS22175at 4922.009 kb on - strand, within QEN71_RS22175at 4922.264 kb on - strand, within QEN71_RS22175at 4922.264 kb on - strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.473 kb on + strand, within QEN71_RS22175at 4922.474 kb on - strand, within QEN71_RS22175at 4922.474 kb on - strand, within QEN71_RS22175at 4922.474 kb on - strand, within QEN71_RS22175

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,919,952 + QEN71_RS22165 0.24 +2.3
4,919,952 + QEN71_RS22165 0.24 -0.2
4,919,952 + QEN71_RS22165 0.24 +0.4
4,919,953 - QEN71_RS22165 0.24 -1.3
4,919,953 - QEN71_RS22165 0.24 -0.1
4,919,953 - QEN71_RS22165 0.24 -0.3
4,919,953 - QEN71_RS22165 0.24 +0.7
4,919,953 - QEN71_RS22165 0.24 -1.8
4,919,953 - QEN71_RS22165 0.24 +1.1
4,920,222 + QEN71_RS22165 0.46 +0.2
4,920,352 + QEN71_RS22165 0.57 -1.6
4,920,353 - QEN71_RS22165 0.57 -0.3
4,920,453 + QEN71_RS22165 0.66 +1.0
4,920,453 + QEN71_RS22165 0.66 -0.1
4,920,453 + QEN71_RS22165 0.66 -0.6
4,920,453 + QEN71_RS22165 0.66 -1.0
4,920,453 + QEN71_RS22165 0.66 +0.1
4,920,453 + QEN71_RS22165 0.66 +2.5
4,920,454 - QEN71_RS22165 0.66 +0.9
4,920,454 - QEN71_RS22165 0.66 -1.5
4,920,454 - QEN71_RS22165 0.66 +0.4
4,920,454 - QEN71_RS22165 0.66 -0.0
4,920,454 - QEN71_RS22165 0.66 -0.4
4,920,456 + QEN71_RS22165 0.66 -1.0
4,920,456 + QEN71_RS22165 0.66 +0.4
4,920,457 - QEN71_RS22165 0.66 -0.9
4,920,516 + QEN71_RS22165 0.71 +0.5
4,920,567 + QEN71_RS22165 0.76 -0.6
4,920,567 + QEN71_RS22165 0.76 +0.3
4,920,567 + QEN71_RS22165 0.76 -0.2
4,920,567 + QEN71_RS22165 0.76 -0.1
4,920,567 + QEN71_RS22165 0.76 -0.4
4,920,567 + QEN71_RS22165 0.76 +0.4
4,920,567 + QEN71_RS22165 0.76 +0.9
4,920,568 - QEN71_RS22165 0.76 -0.7
4,920,885 + -1.6
4,920,885 + -0.7
4,920,886 - +0.4
4,920,886 - -0.6
4,920,898 + -0.6
4,920,898 + -0.3
4,920,908 + +0.8
4,920,909 - -0.0
4,920,909 - +0.5
4,921,009 + QEN71_RS22170 0.16 -1.0
4,921,010 - QEN71_RS22170 0.16 +0.7
4,921,010 - QEN71_RS22170 0.16 +0.6
4,921,010 - QEN71_RS22170 0.16 -0.9
4,921,170 + QEN71_RS22170 0.42 -0.6
4,921,170 + QEN71_RS22170 0.42 -0.2
4,921,170 + QEN71_RS22170 0.42 -0.0
4,921,170 + QEN71_RS22170 0.42 +1.7
4,921,171 - QEN71_RS22170 0.42 +2.0
4,921,171 - QEN71_RS22170 0.42 +1.5
4,921,171 - QEN71_RS22170 0.42 -0.8
4,921,257 - QEN71_RS22170 0.56 -1.3
4,921,262 + QEN71_RS22170 0.56 -0.9
4,921,262 + QEN71_RS22170 0.56 +0.7
4,921,263 - QEN71_RS22170 0.57 -0.4
4,921,263 - QEN71_RS22170 0.57 +1.0
4,921,263 - QEN71_RS22170 0.57 -0.6
4,921,349 + QEN71_RS22170 0.70 -0.5
4,921,568 + -0.3
4,921,568 + +1.3
4,921,601 + +1.6
4,921,602 - -0.1
4,921,726 + -0.3
4,921,726 + +0.2
4,921,753 + -0.3
4,921,753 + -1.0
4,921,753 + +1.5
4,921,753 + -0.0
4,921,754 - -0.0
4,921,979 + QEN71_RS22175 0.27 -0.7
4,921,979 + QEN71_RS22175 0.27 -0.5
4,921,979 + QEN71_RS22175 0.27 +0.4
4,921,979 + QEN71_RS22175 0.27 +0.2
4,921,979 + QEN71_RS22175 0.27 -0.3
4,921,979 + QEN71_RS22175 0.27 -0.2
4,921,979 + QEN71_RS22175 0.27 +1.6
4,921,979 + QEN71_RS22175 0.27 -0.2
4,921,979 + QEN71_RS22175 0.27 +0.9
4,921,980 - QEN71_RS22175 0.27 -1.0
4,921,980 - QEN71_RS22175 0.27 -3.1
4,921,980 - QEN71_RS22175 0.27 -1.5
4,921,980 - QEN71_RS22175 0.27 +0.8
4,921,981 + QEN71_RS22175 0.27 -2.1
4,921,981 + QEN71_RS22175 0.27 -0.0
4,921,981 + QEN71_RS22175 0.27 +0.7
4,921,981 + QEN71_RS22175 0.27 +0.1
4,921,981 + QEN71_RS22175 0.27 -0.4
4,921,981 + QEN71_RS22175 0.27 -1.1
4,921,981 + QEN71_RS22175 0.27 +0.6
4,921,981 + QEN71_RS22175 0.27 +1.5
4,921,981 + QEN71_RS22175 0.27 -0.1
4,921,981 + QEN71_RS22175 0.27 +0.9
4,921,981 + QEN71_RS22175 0.27 -1.0
4,921,981 + QEN71_RS22175 0.27 +0.2
4,921,981 + QEN71_RS22175 0.27 -1.0
4,921,981 + QEN71_RS22175 0.27 +0.2
4,921,981 + QEN71_RS22175 0.27 -1.5
4,921,982 - QEN71_RS22175 0.27 +0.0
4,921,982 - QEN71_RS22175 0.27 -1.0
4,921,982 - QEN71_RS22175 0.27 +0.1
4,921,982 - QEN71_RS22175 0.27 -0.2
4,921,982 - QEN71_RS22175 0.27 -0.3
4,921,982 - QEN71_RS22175 0.27 +1.1
4,921,982 - QEN71_RS22175 0.27 -1.7
4,921,982 - QEN71_RS22175 0.27 -0.8
4,921,982 - QEN71_RS22175 0.27 -0.8
4,921,982 - QEN71_RS22175 0.27 -0.0
4,921,982 - QEN71_RS22175 0.27 +0.8
4,921,982 - QEN71_RS22175 0.27 +0.2
4,922,009 - QEN71_RS22175 0.29 +0.4
4,922,264 - QEN71_RS22175 0.51 -0.2
4,922,264 - QEN71_RS22175 0.51 +1.2
4,922,473 + QEN71_RS22175 0.68 -1.3
4,922,473 + QEN71_RS22175 0.68 +0.7
4,922,473 + QEN71_RS22175 0.68 -0.8
4,922,473 + QEN71_RS22175 0.68 -1.2
4,922,473 + QEN71_RS22175 0.68 +0.3
4,922,473 + QEN71_RS22175 0.68 +0.4
4,922,474 - QEN71_RS22175 0.69 +0.4
4,922,474 - QEN71_RS22175 0.69 +0.4
4,922,474 - QEN71_RS22175 0.69 +0.4

Or see this region's nucleotide sequence