Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19610 and QEN71_RS19615 are separated by 120 nucleotides QEN71_RS19615 and QEN71_RS19620 are separated by 27 nucleotides
QEN71_RS19610: QEN71_RS19610 - UbiD family decarboxylase, at 4,368,863 to 4,370,320
_RS19610
QEN71_RS19615: QEN71_RS19615 - carbon monoxide dehydrogenase subunit G, at 4,370,441 to 4,371,076
_RS19615
QEN71_RS19620: QEN71_RS19620 - MFS transporter, at 4,371,104 to 4,372,519
_RS19620
Position (kb) 4370
4371
4372 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4369.514 kb on + strand, within QEN71_RS19610 at 4369.557 kb on - strand, within QEN71_RS19610 at 4369.557 kb on - strand, within QEN71_RS19610 at 4369.562 kb on + strand, within QEN71_RS19610 at 4369.562 kb on + strand, within QEN71_RS19610 at 4369.563 kb on - strand, within QEN71_RS19610 at 4369.658 kb on + strand, within QEN71_RS19610 at 4369.683 kb on + strand, within QEN71_RS19610 at 4369.764 kb on - strand, within QEN71_RS19610 at 4369.820 kb on + strand, within QEN71_RS19610 at 4369.826 kb on + strand, within QEN71_RS19610 at 4370.018 kb on + strand, within QEN71_RS19610 at 4370.018 kb on + strand, within QEN71_RS19610 at 4370.018 kb on + strand, within QEN71_RS19610 at 4370.018 kb on + strand, within QEN71_RS19610 at 4370.019 kb on - strand, within QEN71_RS19610 at 4370.019 kb on - strand, within QEN71_RS19610 at 4370.019 kb on - strand, within QEN71_RS19610 at 4370.019 kb on - strand, within QEN71_RS19610 at 4370.181 kb on - strand at 4370.360 kb on + strand at 4370.361 kb on - strand at 4370.361 kb on - strand at 4370.363 kb on - strand at 4370.660 kb on + strand, within QEN71_RS19615 at 4371.062 kb on + strand at 4371.377 kb on + strand, within QEN71_RS19620 at 4371.377 kb on + strand, within QEN71_RS19620 at 4371.379 kb on + strand, within QEN71_RS19620 at 4371.578 kb on + strand, within QEN71_RS19620 at 4371.579 kb on - strand, within QEN71_RS19620 at 4371.579 kb on - strand, within QEN71_RS19620 at 4371.630 kb on - strand, within QEN71_RS19620
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 4,369,514 + QEN71_RS19610 0.45 -1.0 4,369,557 - QEN71_RS19610 0.48 -1.5 4,369,557 - QEN71_RS19610 0.48 +0.9 4,369,562 + QEN71_RS19610 0.48 +0.0 4,369,562 + QEN71_RS19610 0.48 +0.3 4,369,563 - QEN71_RS19610 0.48 -0.2 4,369,658 + QEN71_RS19610 0.55 +0.8 4,369,683 + QEN71_RS19610 0.56 -0.5 4,369,764 - QEN71_RS19610 0.62 +0.3 4,369,820 + QEN71_RS19610 0.66 -0.3 4,369,826 + QEN71_RS19610 0.66 -0.4 4,370,018 + QEN71_RS19610 0.79 -0.4 4,370,018 + QEN71_RS19610 0.79 -0.4 4,370,018 + QEN71_RS19610 0.79 +0.5 4,370,018 + QEN71_RS19610 0.79 +0.4 4,370,019 - QEN71_RS19610 0.79 -0.2 4,370,019 - QEN71_RS19610 0.79 +0.1 4,370,019 - QEN71_RS19610 0.79 +0.6 4,370,019 - QEN71_RS19610 0.79 +0.6 4,370,181 - -0.3 4,370,360 + -1.1 4,370,361 - -0.1 4,370,361 - +0.1 4,370,363 - -0.5 4,370,660 + QEN71_RS19615 0.34 -0.1 4,371,062 + -0.1 4,371,377 + QEN71_RS19620 0.19 -0.5 4,371,377 + QEN71_RS19620 0.19 +0.1 4,371,379 + QEN71_RS19620 0.19 +0.4 4,371,578 + QEN71_RS19620 0.33 -3.0 4,371,579 - QEN71_RS19620 0.34 +0.4 4,371,579 - QEN71_RS19620 0.34 +0.6 4,371,630 - QEN71_RS19620 0.37 -0.1
Or see this region's nucleotide sequence