Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18615

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18615 and QEN71_RS18620 are separated by 154 nucleotides QEN71_RS18615: QEN71_RS18615 - IS110 family transposase, at 4,144,876 to 4,145,889 _RS18615 QEN71_RS18620: QEN71_RS18620 - HAD-IA family hydrolase, at 4,146,044 to 4,146,661 _RS18620 Position (kb) 4144 4145 4146Strain fitness (log2 ratio) -2 -1 0 1 2at 4143.961 kb on - strandat 4143.961 kb on - strandat 4143.988 kb on + strandat 4143.988 kb on + strandat 4143.992 kb on + strandat 4144.002 kb on + strandat 4144.002 kb on + strandat 4144.003 kb on - strandat 4144.016 kb on + strandat 4144.016 kb on + strandat 4144.016 kb on + strandat 4144.016 kb on + strandat 4144.016 kb on + strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.017 kb on - strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.020 kb on + strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.021 kb on - strandat 4144.030 kb on - strandat 4144.093 kb on + strandat 4144.093 kb on + strandat 4144.094 kb on - strandat 4144.094 kb on - strandat 4144.097 kb on + strandat 4144.097 kb on + strandat 4144.097 kb on + strandat 4144.097 kb on + strandat 4144.098 kb on - strandat 4144.098 kb on - strandat 4144.267 kb on + strandat 4144.267 kb on + strandat 4144.268 kb on - strandat 4144.268 kb on - strandat 4144.276 kb on + strandat 4144.276 kb on + strandat 4144.277 kb on - strandat 4144.297 kb on - strandat 4144.404 kb on + strandat 4144.404 kb on + strandat 4144.404 kb on + strandat 4144.405 kb on - strandat 4144.405 kb on - strandat 4144.405 kb on - strandat 4144.405 kb on - strandat 4144.421 kb on + strandat 4144.422 kb on - strandat 4144.422 kb on - strandat 4144.422 kb on - strandat 4145.970 kb on + strandat 4145.996 kb on + strandat 4145.997 kb on - strandat 4145.997 kb on - strandat 4146.048 kb on + strandat 4146.048 kb on + strandat 4146.048 kb on + strandat 4146.048 kb on + strandat 4146.049 kb on - strandat 4146.049 kb on - strandat 4146.057 kb on + strandat 4146.058 kb on - strandat 4146.058 kb on - strandat 4146.058 kb on - strandat 4146.068 kb on + strandat 4146.068 kb on + strandat 4146.068 kb on + strandat 4146.069 kb on - strandat 4146.069 kb on - strandat 4146.069 kb on - strandat 4146.079 kb on - strandat 4146.079 kb on - strandat 4146.091 kb on + strandat 4146.212 kb on - strand, within QEN71_RS18620at 4146.341 kb on + strand, within QEN71_RS18620at 4146.341 kb on + strand, within QEN71_RS18620at 4146.341 kb on + strand, within QEN71_RS18620at 4146.342 kb on - strand, within QEN71_RS18620at 4146.342 kb on - strand, within QEN71_RS18620at 4146.376 kb on + strand, within QEN71_RS18620at 4146.376 kb on + strand, within QEN71_RS18620at 4146.391 kb on - strand, within QEN71_RS18620at 4146.429 kb on + strand, within QEN71_RS18620at 4146.430 kb on - strand, within QEN71_RS18620at 4146.502 kb on + strand, within QEN71_RS18620at 4146.504 kb on + strand, within QEN71_RS18620at 4146.504 kb on + strand, within QEN71_RS18620at 4146.504 kb on + strand, within QEN71_RS18620at 4146.505 kb on - strand, within QEN71_RS18620at 4146.505 kb on - strand, within QEN71_RS18620at 4146.505 kb on - strand, within QEN71_RS18620at 4146.505 kb on - strand, within QEN71_RS18620at 4146.613 kb on + strandat 4146.613 kb on + strandat 4146.614 kb on - strandat 4146.614 kb on - strandat 4146.614 kb on - strandat 4146.655 kb on - strandat 4146.659 kb on + strandat 4146.659 kb on + strandat 4146.659 kb on + strandat 4146.659 kb on + strandat 4146.660 kb on - strandat 4146.660 kb on - strandat 4146.767 kb on + strandat 4146.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,143,961 - -0.8
4,143,961 - -0.7
4,143,988 + -0.0
4,143,988 + -0.4
4,143,992 + +0.6
4,144,002 + -0.7
4,144,002 + -1.0
4,144,003 - -1.6
4,144,016 + +0.1
4,144,016 + -0.8
4,144,016 + +1.5
4,144,016 + -0.5
4,144,016 + +1.5
4,144,017 - +0.5
4,144,017 - -2.2
4,144,017 - -0.3
4,144,017 - -0.4
4,144,017 - +0.0
4,144,017 - -0.7
4,144,017 - -0.3
4,144,017 - +0.3
4,144,020 + +0.8
4,144,020 + -0.2
4,144,020 + +0.9
4,144,020 + +0.5
4,144,020 + +0.1
4,144,020 + -0.6
4,144,020 + -0.5
4,144,020 + +1.0
4,144,020 + +1.6
4,144,020 + -0.8
4,144,020 + +1.7
4,144,020 + +0.7
4,144,020 + -2.7
4,144,020 + -0.8
4,144,020 + -0.0
4,144,020 + -0.4
4,144,020 + -0.8
4,144,021 - -0.0
4,144,021 - -1.4
4,144,021 - +0.5
4,144,021 - -1.2
4,144,021 - -0.2
4,144,021 - +0.9
4,144,021 - +0.3
4,144,021 - +0.2
4,144,021 - -0.7
4,144,021 - -0.3
4,144,021 - +1.0
4,144,021 - -0.4
4,144,021 - +0.1
4,144,021 - -2.1
4,144,021 - -0.2
4,144,021 - +0.4
4,144,021 - -0.2
4,144,021 - -0.5
4,144,021 - +1.1
4,144,021 - -0.5
4,144,021 - +1.9
4,144,030 - -1.5
4,144,093 + +0.8
4,144,093 + -0.0
4,144,094 - +0.1
4,144,094 - -0.2
4,144,097 + +0.4
4,144,097 + -0.8
4,144,097 + -0.1
4,144,097 + +0.2
4,144,098 - -0.2
4,144,098 - -1.0
4,144,267 + -0.4
4,144,267 + +0.7
4,144,268 - -0.0
4,144,268 - -0.3
4,144,276 + +0.6
4,144,276 + -1.1
4,144,277 - -0.4
4,144,297 - -0.6
4,144,404 + +0.3
4,144,404 + -0.6
4,144,404 + -0.3
4,144,405 - +0.6
4,144,405 - +0.8
4,144,405 - -1.1
4,144,405 - +1.5
4,144,421 + -0.5
4,144,422 - -0.6
4,144,422 - -0.5
4,144,422 - +1.2
4,145,970 + -1.0
4,145,996 + -0.7
4,145,997 - +0.5
4,145,997 - +1.3
4,146,048 + -0.2
4,146,048 + +0.4
4,146,048 + +0.9
4,146,048 + +0.5
4,146,049 - +0.4
4,146,049 - -0.4
4,146,057 + -0.7
4,146,058 - +0.1
4,146,058 - -0.1
4,146,058 - -0.3
4,146,068 + +0.4
4,146,068 + -1.3
4,146,068 + -0.2
4,146,069 - -0.0
4,146,069 - +0.4
4,146,069 - +0.1
4,146,079 - -0.5
4,146,079 - +0.4
4,146,091 + -0.8
4,146,212 - QEN71_RS18620 0.27 -0.2
4,146,341 + QEN71_RS18620 0.48 -0.6
4,146,341 + QEN71_RS18620 0.48 -0.2
4,146,341 + QEN71_RS18620 0.48 +0.5
4,146,342 - QEN71_RS18620 0.48 +0.4
4,146,342 - QEN71_RS18620 0.48 -0.7
4,146,376 + QEN71_RS18620 0.54 -0.2
4,146,376 + QEN71_RS18620 0.54 -0.6
4,146,391 - QEN71_RS18620 0.56 +0.7
4,146,429 + QEN71_RS18620 0.62 -0.3
4,146,430 - QEN71_RS18620 0.62 -0.6
4,146,502 + QEN71_RS18620 0.74 -2.3
4,146,504 + QEN71_RS18620 0.74 -1.0
4,146,504 + QEN71_RS18620 0.74 -0.0
4,146,504 + QEN71_RS18620 0.74 -2.2
4,146,505 - QEN71_RS18620 0.75 -0.2
4,146,505 - QEN71_RS18620 0.75 -0.6
4,146,505 - QEN71_RS18620 0.75 +1.2
4,146,505 - QEN71_RS18620 0.75 +0.0
4,146,613 + -0.9
4,146,613 + -0.2
4,146,614 - +1.0
4,146,614 - +0.4
4,146,614 - -0.5
4,146,655 - -0.3
4,146,659 + +0.4
4,146,659 + -2.1
4,146,659 + -2.1
4,146,659 + +0.0
4,146,660 - +1.7
4,146,660 - +0.4
4,146,767 + +1.0
4,146,768 - -1.7

Or see this region's nucleotide sequence