Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS15030 and QEN71_RS15035 are separated by 71 nucleotides QEN71_RS15035 and QEN71_RS15040 overlap by 8 nucleotides QEN71_RS15040 and QEN71_RS15045 are separated by 309 nucleotides
QEN71_RS15030: QEN71_RS15030 - LPS-assembly protein LptD, at 3,345,752 to 3,348,007
_RS15030
QEN71_RS15035: QEN71_RS15035 - hypothetical protein, at 3,348,079 to 3,348,387
_RS15035
QEN71_RS15040: QEN71_RS15040 - hypothetical protein, at 3,348,380 to 3,348,559
_RS15040
QEN71_RS15045: QEN71_RS15045 - outer membrane protein assembly factor BamA, at 3,348,869 to 3,351,178
_RS15045
Position (kb)
3348
3349 Strain fitness (log2 ratio)
-1
0
1 at 3347.694 kb on + strand, within QEN71_RS15030 at 3347.773 kb on - strand, within QEN71_RS15030 at 3347.773 kb on - strand, within QEN71_RS15030 at 3348.077 kb on + strand at 3348.078 kb on - strand at 3348.176 kb on + strand, within QEN71_RS15035 at 3348.176 kb on + strand, within QEN71_RS15035 at 3348.177 kb on - strand, within QEN71_RS15035 at 3348.177 kb on - strand, within QEN71_RS15035 at 3348.320 kb on + strand, within QEN71_RS15035 at 3348.321 kb on - strand, within QEN71_RS15035 at 3348.547 kb on + strand at 3348.547 kb on + strand at 3348.548 kb on - strand at 3348.774 kb on + strand at 3348.776 kb on + strand at 3348.776 kb on + strand at 3348.889 kb on + strand at 3348.889 kb on + strand at 3348.890 kb on - strand at 3348.890 kb on - strand at 3348.917 kb on + strand at 3348.918 kb on - strand at 3349.091 kb on + strand at 3349.314 kb on - strand, within QEN71_RS15045 at 3349.331 kb on + strand, within QEN71_RS15045 at 3349.332 kb on - strand, within QEN71_RS15045
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 3,347,694 + QEN71_RS15030 0.86 +1.0 3,347,773 - QEN71_RS15030 0.90 +1.6 3,347,773 - QEN71_RS15030 0.90 -1.5 3,348,077 + +0.9 3,348,078 - +0.1 3,348,176 + QEN71_RS15035 0.31 -0.0 3,348,176 + QEN71_RS15035 0.31 +0.2 3,348,177 - QEN71_RS15035 0.32 -0.8 3,348,177 - QEN71_RS15035 0.32 +0.6 3,348,320 + QEN71_RS15035 0.78 -0.4 3,348,321 - QEN71_RS15035 0.78 -0.5 3,348,547 + -0.4 3,348,547 + -0.0 3,348,548 - +0.7 3,348,774 + -1.2 3,348,776 + -0.8 3,348,776 + +0.5 3,348,889 + -0.2 3,348,889 + +1.1 3,348,890 - -1.0 3,348,890 - -0.0 3,348,917 + -0.4 3,348,918 - -0.4 3,349,091 + -0.6 3,349,314 - QEN71_RS15045 0.19 -0.1 3,349,331 + QEN71_RS15045 0.20 -0.0 3,349,332 - QEN71_RS15045 0.20 -0.2
Or see this region's nucleotide sequence