Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS07730 and QEN71_RS07735 are separated by 15 nucleotides QEN71_RS07735 and QEN71_RS07740 are separated by 21 nucleotides QEN71_RS07740 and QEN71_RS07745 are separated by 61 nucleotides
QEN71_RS07730: QEN71_RS07730 - ABC transporter permease subunit, at 1,714,298 to 1,715,020
_RS07730
QEN71_RS07735: QEN71_RS07735 - ABC transporter permease subunit, at 1,715,036 to 1,715,788
_RS07735
QEN71_RS07740: QEN71_RS07740 - ATP-binding cassette domain-containing protein, at 1,715,810 to 1,716,601
_RS07740
QEN71_RS07745: QEN71_RS07745 - histidine ammonia-lyase, at 1,716,663 to 1,718,270
_RS07745
Position (kb)
1715
1716
1717 Strain fitness (log2 ratio)
-2
-1
0
1 at 1714.895 kb on + strand, within QEN71_RS07730 at 1714.929 kb on - strand, within QEN71_RS07730 at 1714.929 kb on - strand, within QEN71_RS07730 at 1715.207 kb on + strand, within QEN71_RS07735 at 1715.208 kb on - strand, within QEN71_RS07735 at 1715.324 kb on + strand, within QEN71_RS07735 at 1715.324 kb on + strand, within QEN71_RS07735 at 1715.325 kb on - strand, within QEN71_RS07735 at 1715.325 kb on - strand, within QEN71_RS07735 at 1715.325 kb on - strand, within QEN71_RS07735 at 1715.325 kb on - strand, within QEN71_RS07735 at 1715.356 kb on + strand, within QEN71_RS07735 at 1715.356 kb on + strand, within QEN71_RS07735 at 1715.367 kb on - strand, within QEN71_RS07735 at 1715.609 kb on + strand, within QEN71_RS07735 at 1715.610 kb on - strand, within QEN71_RS07735 at 1715.610 kb on - strand, within QEN71_RS07735 at 1715.649 kb on - strand, within QEN71_RS07735 at 1715.649 kb on - strand, within QEN71_RS07735 at 1716.828 kb on - strand, within QEN71_RS07745 at 1717.015 kb on + strand, within QEN71_RS07745 at 1717.015 kb on + strand, within QEN71_RS07745 at 1717.016 kb on - strand, within QEN71_RS07745 at 1717.016 kb on - strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.047 kb on + strand, within QEN71_RS07745 at 1717.049 kb on + strand, within QEN71_RS07745 at 1717.050 kb on - strand, within QEN71_RS07745 at 1717.050 kb on - strand, within QEN71_RS07745 at 1717.083 kb on + strand, within QEN71_RS07745 at 1717.094 kb on + strand, within QEN71_RS07745 at 1717.094 kb on + strand, within QEN71_RS07745
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 1,714,895 + QEN71_RS07730 0.83 -0.2 1,714,929 - QEN71_RS07730 0.87 +0.5 1,714,929 - QEN71_RS07730 0.87 -0.5 1,715,207 + QEN71_RS07735 0.23 +0.1 1,715,208 - QEN71_RS07735 0.23 -0.4 1,715,324 + QEN71_RS07735 0.38 +1.2 1,715,324 + QEN71_RS07735 0.38 -1.2 1,715,325 - QEN71_RS07735 0.38 -0.5 1,715,325 - QEN71_RS07735 0.38 -0.1 1,715,325 - QEN71_RS07735 0.38 +1.6 1,715,325 - QEN71_RS07735 0.38 -1.2 1,715,356 + QEN71_RS07735 0.42 -0.2 1,715,356 + QEN71_RS07735 0.42 -1.0 1,715,367 - QEN71_RS07735 0.44 -1.6 1,715,609 + QEN71_RS07735 0.76 +1.3 1,715,610 - QEN71_RS07735 0.76 -0.6 1,715,610 - QEN71_RS07735 0.76 -0.0 1,715,649 - QEN71_RS07735 0.81 +0.1 1,715,649 - QEN71_RS07735 0.81 -0.0 1,716,828 - QEN71_RS07745 0.10 -0.9 1,717,015 + QEN71_RS07745 0.22 +0.4 1,717,015 + QEN71_RS07745 0.22 -0.8 1,717,016 - QEN71_RS07745 0.22 -0.5 1,717,016 - QEN71_RS07745 0.22 -0.6 1,717,047 + QEN71_RS07745 0.24 +0.6 1,717,047 + QEN71_RS07745 0.24 -0.5 1,717,047 + QEN71_RS07745 0.24 -0.3 1,717,047 + QEN71_RS07745 0.24 -0.4 1,717,047 + QEN71_RS07745 0.24 -0.2 1,717,049 + QEN71_RS07745 0.24 -0.7 1,717,050 - QEN71_RS07745 0.24 +1.0 1,717,050 - QEN71_RS07745 0.24 +0.0 1,717,083 + QEN71_RS07745 0.26 +0.5 1,717,094 + QEN71_RS07745 0.27 -2.3 1,717,094 + QEN71_RS07745 0.27 -0.2
Or see this region's nucleotide sequence